Rroxscaffold_154G00447970

protein polyubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000154
OG0013108
Physical Location & Seq
Reverse (-)
30069 .. 31088
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_154G00447970.1

Sequence Viewer

Length: 273 bp
ATGAGTGGGGGTTTAATATGGGCAACGGCAGAGGACTTGGCGAGAAACAGAGGACGCGTTCTTTCTCTGTATCGCCAGATATTGAGAAGCATCAATTCTCCGAATCTGCCTCTGAATTTGGCAGCAAGACTCGCCAAGAAAGCAGAGGTGCGCGCAATCTTCATGTTGGCTTCTGAGGAGAGGTCCCTGCACAACATTGAAGACCTTGTTGATGCTGCCAACTACTCTCTCTCCCTCTTGAGGAAAGGAGAGATACCCAAGTATATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

9.86

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LYRM_2 PF23655 12 - 81 1.5e-41 LYR motif containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 57, 153
AcsI RAATTY 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 240
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 2 cut(s) 200, 269
ApeKI GCWGC 2 cut(s) 122, 215
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 2 cut(s) 153, 155
AspS9I GGNCC 1 cut(s) 183
AvaII GGWCC 1 cut(s) 183
BaeI ACNNNNGTAYC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 134, 202
BceAI ACGGC 1 cut(s) 42
BisI GCNGC 2 cut(s) 123, 216
BlsI GCNGC 2 cut(s) 124, 217
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 185
BmsI GCATC 2 cut(s) 99, 202
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 165
BsePI GCGCGC 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 134, 202
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 57, 153
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 2 cut(s) 57, 153
BspLI GGNNCC 1 cut(s) 185
BssHII GCGCGC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 174
BstFNI CGCG 2 cut(s) 57, 153
BstHHI GCGC 2 cut(s) 153, 155
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstUI CGCG 2 cut(s) 57, 153
BstV1I GCAGC 2 cut(s) 134, 202
BstV2I GAAGAC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 2 cut(s) 153, 155
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 63
CviAII CATG 1 cut(s) 163
CviJI RGCY 1 cut(s) 170
CviKI_1 RGCY 1 cut(s) 170
DdeI CTNAG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 183
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 19, 164, 264
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 123, 216
Fsp4HI GCNGC 2 cut(s) 123, 216
GlaI GCGC 2 cut(s) 152, 154
GluI GCNGC 2 cut(s) 123, 216
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 153, 155
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 151, 153
HinP1I GCGC 2 cut(s) 151, 153
HinfI GANTC 2 cut(s) 103, 129
Hpy188I TCNGA 3 cut(s) 102, 114, 175
Hpy188III TCNNGA 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 151, 153
LpnPI CCDG 2 cut(s) 89, 200
Lsp1109I GCAGC 2 cut(s) 134, 202
LweI GCATC 2 cut(s) 99, 202
MboII GAAGA 2 cut(s) 151, 212
MluCI AATT 2 cut(s) 94, 115
MluI ACGCGT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 8 cut(s) 25, 44, 120, 139, 169, 174, 234, 245
MseI TTAA 1 cut(s) 14
MvnI CGCG 2 cut(s) 57, 153
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 185
PauI GCGCGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 124, 217
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 183
PspPPI RGGWCCY 1 cut(s) 183
PteI GCGCGC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 123, 216
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 123
SetI ASST 3 cut(s) 150, 185, 207
SfaNI GCATC 2 cut(s) 99, 202
SinI GGWCC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 94, 115
TasI AATT 2 cut(s) 94, 115
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 122, 215
TspDTI ATGAA 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.