Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02150 |
| fragaria_vesca | FvH4_7g09350 |
| malus_domestica | MD02G1219200.v1.1 MD07G1097800.v1.1 |
| prunus_persica | Prupe.2G121900_v2.0.a1 |
| pyrus_communis | pycom02g18110 pycom07g08050 |
| rosa_chinensis | RchiOBHm_Chr1g0346001 |
| rosa_laevigata | RLG00000028826 |
| rosa_multiflora | Rmu_sc0008115.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00308950 |
| rosa_samantha | Rh1AG196500 Rh1BG162000 Rh1CG181400 Rh1DG192300 |
| rosa_wichuraiana | Rw1G016400 Rw1G016520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 171 |
| AccII | CGCG | 1 cut(s) | 206 |
| AciI | CCGC | 4 cut(s) | 214, 470, 617, 969 |
| AclWI | GGATC | 3 cut(s) | 763, 939, 1351 |
| AcsI | RAATTY | 2 cut(s) | 1039, 1391 |
| AcuI | CTGAAG | 3 cut(s) | 909, 920, 1293 |
| AfaI | GTAC | 6 cut(s) | 542, 731, 860, 1013, 1255, 1618 |
| AfeI | AGCGCT | 1 cut(s) | 347 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 904, 1042, 1043 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 191 |
| AjnI | CCWGG | 1 cut(s) | 1557 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 805, 837 |
| AluBI | AGCT | 8 cut(s) | 20, 295, 310, 359, 715, 893, 1271, 1328 |
| AluI | AGCT | 8 cut(s) | 20, 295, 310, 359, 715, 893, 1271, 1328 |
| Alw21I | GWGCWC | 1 cut(s) | 361 |
| Alw26I | GTCTC | 2 cut(s) | 178, 1351 |
| AlwI | GGATC | 3 cut(s) | 763, 939, 1351 |
| Ama87I | CYCGRG | 1 cut(s) | 750 |
| Aor51HI | AGCGCT | 1 cut(s) | 347 |
| ApeKI | GCWGC | 2 cut(s) | 422, 1064 |
| ApoI | RAATTY | 2 cut(s) | 1039, 1391 |
| AseI | ATTAAT | 2 cut(s) | 819, 1548 |
| AspLEI | GCGC | 1 cut(s) | 348 |
| AspS9I | GGNCC | 1 cut(s) | 831 |
| AsuC2I | CCSGG | 1 cut(s) | 548 |
| AsuHPI | GGTGA | 4 cut(s) | 14, 118, 1094, 1577 |
| AvaI | CYCGRG | 1 cut(s) | 750 |
| AvaII | GGWCC | 1 cut(s) | 831 |
| BanII | GRGCYC | 2 cut(s) | 361, 529 |
| Bbv12I | GWGCWC | 1 cut(s) | 361 |
| BbvCI | CCTCAGC | 2 cut(s) | 16, 1338 |
| BbvI | GCAGC | 2 cut(s) | 409, 1051 |
| BccI | CCATC | 6 cut(s) | 94, 116, 137, 691, 862, 1577 |
| BciT130I | CCWGG | 1 cut(s) | 1559 |
| BciVI | GTATCC | 1 cut(s) | 1043 |
| BclI | TGATCA | 1 cut(s) | 381 |
| BcnI | CCSGG | 1 cut(s) | 548 |
| BcoDI | GTCTC | 2 cut(s) | 178, 1351 |
| BfaI | CTAG | 6 cut(s) | 440, 465, 716, 1146, 1251, 1268 |
| BfmI | CTRYAG | 1 cut(s) | 768 |
| BfoI | RGCGCY | 1 cut(s) | 349 |
| BfuI | GTATCC | 1 cut(s) | 1043 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 966 |
| BglII | AGATCT | 2 cut(s) | 436, 1428 |
| BisI | GCNGC | 2 cut(s) | 423, 1065 |
| BlpI | GCTNAGC | 1 cut(s) | 296 |
| BlsI | GCNGC | 2 cut(s) | 424, 1066 |
| Bme1390I | CCNGG | 2 cut(s) | 548, 1559 |
| Bme18I | GGWCC | 1 cut(s) | 831 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 191 |
| BmeT110I | CYCGRG | 1 cut(s) | 750 |
| BmgT120I | GGNCC | 1 cut(s) | 831 |
| BmrFI | CCNGG | 2 cut(s) | 548, 1559 |
| BmrI | ACTGGG | 1 cut(s) | 1023 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BmuI | ACTGGG | 1 cut(s) | 1023 |
| Bpu10I | CCTNAGC | 2 cut(s) | 16, 1338 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 3 cut(s) | 132, 383, 641 |
| BpuMI | CCSGG | 1 cut(s) | 548 |
| BsaI | GGTCTC | 2 cut(s) | 178, 1351 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 904, 1042, 1043 |
| Bse1I | ACTGG | 4 cut(s) | 411, 833, 1029, 1512 |
| Bse3DI | GCAATG | 1 cut(s) | 608 |
| BseBI | CCWGG | 1 cut(s) | 1559 |
| BseGI | GGATG | 2 cut(s) | 47, 384 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 904, 1042, 1043 |
| BseMI | GCAATG | 1 cut(s) | 608 |
| BseMII | CTCAG | 5 cut(s) | 30, 476, 773, 1293, 1329 |
| BseNI | ACTGG | 4 cut(s) | 411, 833, 1029, 1512 |
| BseRI | GAGGAG | 3 cut(s) | 124, 127, 196 |
| BseXI | GCAGC | 2 cut(s) | 409, 1051 |
| Bsh1236I | CGCG | 1 cut(s) | 206 |
| BsiHKAI | GWGCWC | 1 cut(s) | 361 |
| BsiHKCI | CYCGRG | 1 cut(s) | 750 |
| BsiSI | CCGG | 1 cut(s) | 547 |
| BsiWI | CGTACG | 1 cut(s) | 540 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 904, 1042, 1043 |
| BsmAI | GTCTC | 2 cut(s) | 178, 1351 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| Bso31I | GGTCTC | 2 cut(s) | 178, 1351 |
| BsoBI | CYCGRG | 1 cut(s) | 750 |
| Bsp1286I | GDGCHC | 2 cut(s) | 361, 529 |
| Bsp1407I | TGTACA | 2 cut(s) | 858, 1011 |
| Bsp143I | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 296 |
| BspACI | CCGC | 4 cut(s) | 214, 470, 617, 969 |
| BspCNI | CTCAG | 5 cut(s) | 29, 477, 772, 1294, 1330 |
| BspFNI | CGCG | 1 cut(s) | 206 |
| BspMAI | CTGCAG | 1 cut(s) | 772 |
| BspPI | GGATC | 3 cut(s) | 763, 939, 1351 |
| BspTNI | GGTCTC | 2 cut(s) | 178, 1351 |
| BsrDI | GCAATG | 1 cut(s) | 608 |
| BsrGI | TGTACA | 2 cut(s) | 858, 1011 |
| BsrI | ACTGG | 4 cut(s) | 411, 833, 1029, 1512 |
| BssMI | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| Bst2UI | CCWGG | 1 cut(s) | 1559 |
| Bst4CI | ACNGT | 4 cut(s) | 169, 1126, 1565, 1616 |
| Bst6I | CTCTTC | 2 cut(s) | 1281, 1286 |
| BstAUI | TGTACA | 2 cut(s) | 858, 1011 |
| BstC8I | GCNNGC | 2 cut(s) | 231, 895 |
| BstDEI | CTNAG | 6 cut(s) | 16, 296, 485, 759, 1302, 1338 |
| BstEII | GGTNACC | 1 cut(s) | 1046 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 902 |
| BstF5I | GGATG | 2 cut(s) | 47, 384 |
| BstFNI | CGCG | 1 cut(s) | 206 |
| BstH2I | RGCGCY | 1 cut(s) | 349 |
| BstHHI | GCGC | 1 cut(s) | 348 |
| BstKTI | GATC | 6 cut(s) | 384, 439, 758, 934, 1346, 1431 |
| BstMAI | GTCTC | 2 cut(s) | 178, 1351 |
| BstMBI | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 966, 1061, 1334 |
| BstNI | CCWGG | 1 cut(s) | 1559 |
| BstPI | GGTNACC | 1 cut(s) | 1046 |
| BstSCI | CCNGG | 2 cut(s) | 546, 1557 |
| BstSFI | CTRYAG | 1 cut(s) | 768 |
| BstUI | CGCG | 1 cut(s) | 206 |
| BstV1I | GCAGC | 2 cut(s) | 409, 1051 |
| BstX2I | RGATCY | 3 cut(s) | 436, 755, 1428 |
| BstYI | RGATCY | 3 cut(s) | 436, 755, 1428 |
| BsuI | GTATCC | 1 cut(s) | 1043 |
| BtsCI | GGATG | 2 cut(s) | 47, 384 |
| BtsIMutI | CAGTG | 3 cut(s) | 165, 278, 1519 |
| Cac8I | GCNNGC | 2 cut(s) | 231, 895 |
| CfoI | GCGC | 1 cut(s) | 348 |
| Cfr13I | GGNCC | 1 cut(s) | 831 |
| Csp6I | GTAC | 6 cut(s) | 541, 730, 859, 1012, 1254, 1617 |
| CviAII | CATG | 4 cut(s) | 605, 1052, 1222, 1257 |
| CviQI | GTAC | 6 cut(s) | 541, 730, 859, 1012, 1254, 1617 |
| DdeI | CTNAG | 6 cut(s) | 16, 296, 485, 759, 1302, 1338 |
| DpnI | GATC | 6 cut(s) | 383, 438, 757, 933, 1345, 1430 |
| DpnII | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| DriI | GACNNNNNGTC | 1 cut(s) | 191 |
| Eam1104I | CTCTTC | 2 cut(s) | 1281, 1286 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 191 |
| EarI | CTCTTC | 2 cut(s) | 1281, 1286 |
| Ecl136II | GAGCTC | 1 cut(s) | 359 |
| Eco24I | GRGCYC | 2 cut(s) | 361, 529 |
| Eco31I | GGTCTC | 2 cut(s) | 178, 1351 |
| Eco32I | GATATC | 1 cut(s) | 222 |
| Eco47I | GGWCC | 1 cut(s) | 831 |
| Eco47III | AGCGCT | 1 cut(s) | 347 |
| Eco53kI | GAGCTC | 1 cut(s) | 359 |
| Eco57I | CTGAAG | 3 cut(s) | 909, 920, 1293 |
| Eco88I | CYCGRG | 1 cut(s) | 750 |
| Eco91I | GGTNACC | 1 cut(s) | 1046 |
| EcoICRI | GAGCTC | 1 cut(s) | 359 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 902 |
| EcoO65I | GGTNACC | 1 cut(s) | 1046 |
| EcoRI | GAATTC | 1 cut(s) | 1391 |
| EcoRII | CCWGG | 1 cut(s) | 1557 |
| EcoRV | GATATC | 1 cut(s) | 222 |
| EcoT22I | ATGCAT | 2 cut(s) | 610, 1483 |
| EcoT38I | GRGCYC | 2 cut(s) | 361, 529 |
| FaeI | CATG | 4 cut(s) | 608, 1055, 1225, 1260 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 4 cut(s) | 604, 1051, 1221, 1256 |
| FauI | CCCGC | 1 cut(s) | 624 |
| FauNDI | CATATG | 1 cut(s) | 1477 |
| FbaI | TGATCA | 1 cut(s) | 381 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 2 cut(s) | 423, 1065 |
| FokI | GGATG | 2 cut(s) | 34, 391 |
| FriOI | GRGCYC | 2 cut(s) | 361, 529 |
| Fsp4HI | GCNGC | 2 cut(s) | 423, 1065 |
| FspBI | CTAG | 6 cut(s) | 440, 465, 716, 1146, 1251, 1268 |
| GlaI | GCGC | 1 cut(s) | 347 |
| GluI | GCNGC | 2 cut(s) | 423, 1065 |
| HaeII | RGCGCY | 1 cut(s) | 349 |
| HapII | CCGG | 1 cut(s) | 547 |
| HhaI | GCGC | 1 cut(s) | 348 |
| Hin1II | CATG | 4 cut(s) | 608, 1055, 1225, 1260 |
| Hin6I | GCGC | 1 cut(s) | 346 |
| HinP1I | GCGC | 1 cut(s) | 346 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 3 cut(s) | 293, 891, 1326 |
| HinfI | GANTC | 7 cut(s) | 268, 487, 572, 677, 937, 1296, 1508 |
| HpaII | CCGG | 1 cut(s) | 547 |
| HphI | GGTGA | 4 cut(s) | 14, 118, 1094, 1577 |
| Hpy166II | GTNNAC | 4 cut(s) | 154, 172, 1012, 1400 |
| Hpy188I | TCNGA | 7 cut(s) | 691, 936, 1076, 1303, 1501, 1579, 1591 |
| Hpy188III | TCNNGA | 7 cut(s) | 362, 484, 750, 865, 929, 1036, 1455 |
| Hpy8I | GTNNAC | 4 cut(s) | 154, 172, 1012, 1400 |
| HpyAV | CCTTC | 8 cut(s) | 274, 499, 898, 1085, 1178, 1268, 1393, 1400 |
| HpyCH4III | ACNGT | 4 cut(s) | 169, 1126, 1565, 1616 |
| HpyCH4IV | ACGT | 1 cut(s) | 543 |
| HpyCH4V | TGCA | 7 cut(s) | 425, 559, 608, 613, 770, 1481, 1612 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 966, 1061, 1334 |
| HpyF3I | CTNAG | 6 cut(s) | 16, 296, 485, 759, 1302, 1338 |
| HpySE526I | ACGT | 1 cut(s) | 543 |
| Hsp92II | CATG | 4 cut(s) | 608, 1055, 1225, 1260 |
| HspAI | GCGC | 1 cut(s) | 346 |
| Ksp22I | TGATCA | 1 cut(s) | 381 |
| Kzo9I | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| LmnI | GCTCC | 1 cut(s) | 307 |
| Lsp1109I | GCAGC | 2 cut(s) | 409, 1051 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 6 cut(s) | 440, 465, 716, 1146, 1251, 1268 |
| MaeII | ACGT | 1 cut(s) | 543 |
| MaeIII | GTNAC | 3 cut(s) | 977, 1046, 1375 |
| MalI | GATC | 6 cut(s) | 383, 438, 757, 933, 1345, 1430 |
| MboI | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| MboII | GAAGA | 5 cut(s) | 913, 1193, 1298, 1303, 1517 |
| MfeI | CAATTG | 1 cut(s) | 1607 |
| MflI | RGATCY | 3 cut(s) | 436, 755, 1428 |
| MhlI | GDGCHC | 2 cut(s) | 361, 529 |
| MlyI | GAGTC | 1 cut(s) | 496 |
| MmeI | TCCRAC | 2 cut(s) | 786, 1334 |
| Mph1103I | ATGCAT | 2 cut(s) | 610, 1483 |
| MseI | TTAA | 8 cut(s) | 324, 627, 819, 956, 1128, 1371, 1415, 1548 |
| MslI | CAYNNNNRTG | 2 cut(s) | 159, 866 |
| MspI | CCGG | 1 cut(s) | 547 |
| MspR9I | CCNGG | 2 cut(s) | 548, 1559 |
| MunI | CAATTG | 1 cut(s) | 1607 |
| MvaI | CCWGG | 1 cut(s) | 1559 |
| MvnI | CGCG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 966, 1061, 1334 |
| NciI | CCSGG | 1 cut(s) | 548 |
| NdeI | CATATG | 1 cut(s) | 1477 |
| NdeII | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| NlaIII | CATG | 4 cut(s) | 608, 1055, 1225, 1260 |
| NmuCI | GTSAC | 1 cut(s) | 1375 |
| NsiI | ATGCAT | 2 cut(s) | 610, 1483 |
| PaeR7I | CTCGAG | 1 cut(s) | 750 |
| PfeI | GAWTC | 6 cut(s) | 268, 572, 677, 937, 1296, 1508 |
| Pfl23II | CGTACG | 1 cut(s) | 540 |
| PkrI | GCNGC | 2 cut(s) | 424, 1066 |
| PleI | GAGTC | 1 cut(s) | 495 |
| PpsI | GAGTC | 1 cut(s) | 495 |
| PshBI | ATTAAT | 2 cut(s) | 819, 1548 |
| Psp124BI | GAGCTC | 1 cut(s) | 361 |
| Psp6I | CCWGG | 1 cut(s) | 1557 |
| PspEI | GGTNACC | 1 cut(s) | 1046 |
| PspGI | CCWGG | 1 cut(s) | 1557 |
| PspLI | CGTACG | 1 cut(s) | 540 |
| PspPI | GGNCC | 1 cut(s) | 831 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 194, 226 |
| PstI | CTGCAG | 1 cut(s) | 772 |
| PsuI | RGATCY | 3 cut(s) | 436, 755, 1428 |
| RsaI | GTAC | 6 cut(s) | 542, 731, 860, 1013, 1255, 1618 |
| RsaNI | GTAC | 6 cut(s) | 541, 730, 859, 1012, 1254, 1617 |
| RseI | CAYNNNNRTG | 2 cut(s) | 159, 866 |
| SacI | GAGCTC | 1 cut(s) | 361 |
| SalI | GTCGAC | 1 cut(s) | 170 |
| SaqAI | TTAA | 8 cut(s) | 324, 627, 819, 956, 1128, 1371, 1415, 1548 |
| SatI | GCNGC | 2 cut(s) | 423, 1065 |
| Sau3AI | GATC | 6 cut(s) | 381, 436, 755, 931, 1343, 1428 |
| Sau96I | GGNCC | 1 cut(s) | 831 |
| SchI | GAGTC | 1 cut(s) | 496 |
| ScrFI | CCNGG | 2 cut(s) | 548, 1559 |
| SduI | GDGCHC | 2 cut(s) | 361, 529 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SfcI | CTRYAG | 1 cut(s) | 768 |
| Sfr274I | CTCGAG | 1 cut(s) | 750 |
| SinI | GGWCC | 1 cut(s) | 831 |
| SlaI | CTCGAG | 1 cut(s) | 750 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 159, 866 |
| SmlI | CTYRAG | 4 cut(s) | 147, 362, 656, 750 |
| SmoI | CTYRAG | 4 cut(s) | 147, 362, 656, 750 |
| SsiI | CCGC | 4 cut(s) | 214, 470, 617, 969 |
| SspI | AATATT | 1 cut(s) | 736 |
| SspMI | CTAG | 6 cut(s) | 440, 465, 716, 1146, 1251, 1268 |
| SstI | GAGCTC | 1 cut(s) | 361 |
| StyD4I | CCNGG | 2 cut(s) | 546, 1557 |
| TaaI | ACNGT | 4 cut(s) | 169, 1126, 1565, 1616 |
| TaiI | ACGT | 1 cut(s) | 546 |
| TaqI | TCGA | 3 cut(s) | 171, 257, 751 |
| TatI | WGTACW | 3 cut(s) | 858, 1011, 1253 |
| TfiI | GAWTC | 6 cut(s) | 268, 572, 677, 937, 1296, 1508 |
| Tru1I | TTAA | 8 cut(s) | 324, 627, 819, 956, 1128, 1371, 1415, 1548 |
| Tru9I | TTAA | 8 cut(s) | 324, 627, 819, 956, 1128, 1371, 1415, 1548 |
| TscAI | CASTG | 3 cut(s) | 172, 278, 1519 |
| TseFI | GTSAC | 1 cut(s) | 1375 |
| TseI | GCWGC | 2 cut(s) | 422, 1064 |
| Tsp45I | GTSAC | 1 cut(s) | 1375 |
| TspDTI | ATGAA | 5 cut(s) | 665, 815, 1153, 1404, 1518 |
| TspRI | CASTG | 3 cut(s) | 172, 278, 1519 |
| VpaK11BI | GGWCC | 1 cut(s) | 831 |
| VspI | ATTAAT | 2 cut(s) | 819, 1548 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 902 |
| XapI | RAATTY | 2 cut(s) | 1039, 1391 |
| XhoI | CTCGAG | 1 cut(s) | 750 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| XspI | CTAG | 6 cut(s) | 440, 465, 716, 1146, 1251, 1268 |
| Zsp2I | ATGCAT | 2 cut(s) | 610, 1483 |