FvH4_7g09350

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
9001892 .. 9005331
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09350.t1

Sequence Viewer

Length: 1626 bp
ATGCTTCTCCAAACCTCAGCTCACCACCTCAACGCCTCTCTCTCATCATCCCTCTCCTACTCTCGCCCCCTCCCCTCTAAAATCCCATCTTTGTCCCTCCCCCGTTCCATCAATTACCAAAGGCTCACCATCTCCTCCTCCATATCTCAAGTTCACAACTATGGCACTGTCGACTATGAGAGGAGACCCATTGTCAAATGGAACGCGATATACCGCAAGATATCGTTGCTGGCTGACGACCCAGAGTTGAACGCTTCGAGTGTTTTGAATCAGTGGGAGAAGGAGGGCAAGAAGCTTAGCAAGTGGGAGCTTTGTAGGGTTGTTAAGGAGTTGAGGAAGTTCAAGCGCTATGGTAGAGCTCTTGAGGTGTATGATTGGATGATCAACAGAGCAGAGAGGTTTAGATTTTCCAGTAGTGATGCTGCAATTCAATTAGATCTAGTTGGTAAAGTAAGGGGAGTTTCTAGTGCGGAAAATTACTTCCTGAGTCTGCCAGATAACTTGAAGGACAAGAGAATATATGGGGCTCTGCTCAATGCGTACGTCCGGGCTAAAATGCAAGAAAAGGCAGAATCTTTGCTTGATAAAATGAGAAGTAAAGGTCATGCATTGCACCCGCTTCCATTTAATGTGATGATGACACTCTATATGAACCTCAAGGAGTATGAGAAAGTAGAATCTATTATTTCCGAAATGATGGAGAAAAACATTCAGCTAGATATATACTCGTACAATATTTGGTTATCATCTCGAGGATCTCAGGGTTCTGCAGAACGAATGGAACAGGTATTTGAACAGATGAAGTTGGACAGAACCATTAATCCCAACTGGACCACATTCAGCACTATGGCTACAATGTACATCAAGATGGGGCTATTTGAAAAGGCTGAAGCTTGCCTGAAGAAGGTTGAGAGTAGAATTACAGGTCGGGATCGGATTCCTTACCATTATCTTTTAAGCCTTTATGGCGGTGTTGGTAACAAAGACGAGATTTATCGGGTATGGAATGTGTACAAATCAAGTTTTCCCAGTATCCCGAATTTGGGTTACCATGCTATTATCGCTGCTCTAATCAGAGTAGGTGATGTTGAAGGGGCAGAAAAGATTTTTGAGGAATGGCTGACAGTTAAGCCAAGTTATGACCCTAGAATTGTCAATCTTTTCATTGTTTCTTACATAGAAGAAGGGGATTTTGATAAAGCCCAGAGTTTCTTTGACAACATGGTTGAAGCAGGAGGAAAACCTAATTCTAGTACATGGGAGGCTCTAGCTGAAGGGCATATTGAAGAGAAGAGAATCTCTGAGGCATTATCCTGCTGGAAAGAAGCTTTTATGGCTGAGGGATCAAAGAGTTGGAGACCAAAGCCCGTTAATGTGACTACCTTCTATGAATTCTGTGAACAAGAAGGCGATTTAAGAAGCAAAGAGATCTTTTTGGGATTGTTGAGGCAGTCAGGACAACTCAAAAATAAGTCATATGCATTACTTGTTGGCTTATCTGATGAAGATTCCAGTGATAATGATATATCATTAGAGAAAGATAGTATTAATGATAACCAGGACGGTGATGAGAAGTCAGATGATGGGTCTGATATGCTTTTGAACCAATTGCACAGTACCCTGTGA

Protein Analysis

542

Amino Acids

62.01

Weight (kDa)

6.23

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 209 - 248 8.5e-06 PPR repeat family
PPR_3 PF13812 227 - 287 4.3e-08 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02150
fragaria_vesca FvH4_7g09350
malus_domestica MD02G1219200.v1.1 MD07G1097800.v1.1
prunus_persica Prupe.2G121900_v2.0.a1
pyrus_communis pycom02g18110 pycom07g08050
rosa_chinensis RchiOBHm_Chr1g0346001
rosa_laevigata RLG00000028826
rosa_multiflora Rmu_sc0008115.1_g000003
rosa_roxburghii Rroxscaffold_4G00308950
rosa_samantha Rh1AG196500 Rh1BG162000 Rh1CG181400 Rh1DG192300
rosa_wichuraiana Rw1G016400 Rw1G016520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 206
AciI CCGC 4 cut(s) 214, 470, 617, 969
AclWI GGATC 3 cut(s) 763, 939, 1351
AcsI RAATTY 2 cut(s) 1039, 1391
AcuI CTGAAG 3 cut(s) 909, 920, 1293
AfaI GTAC 6 cut(s) 542, 731, 860, 1013, 1255, 1618
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 904, 1042, 1043
AhdI GACNNNNNGTC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 1557
AloI GAACNNNNNNTCC 2 cut(s) 805, 837
AluBI AGCT 8 cut(s) 20, 295, 310, 359, 715, 893, 1271, 1328
AluI AGCT 8 cut(s) 20, 295, 310, 359, 715, 893, 1271, 1328
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 178, 1351
AlwI GGATC 3 cut(s) 763, 939, 1351
Ama87I CYCGRG 1 cut(s) 750
Aor51HI AGCGCT 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 422, 1064
ApoI RAATTY 2 cut(s) 1039, 1391
AseI ATTAAT 2 cut(s) 819, 1548
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 831
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 4 cut(s) 14, 118, 1094, 1577
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 1 cut(s) 831
BanII GRGCYC 2 cut(s) 361, 529
Bbv12I GWGCWC 1 cut(s) 361
BbvCI CCTCAGC 2 cut(s) 16, 1338
BbvI GCAGC 2 cut(s) 409, 1051
BccI CCATC 6 cut(s) 94, 116, 137, 691, 862, 1577
BciT130I CCWGG 1 cut(s) 1559
BciVI GTATCC 1 cut(s) 1043
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 548
BcoDI GTCTC 2 cut(s) 178, 1351
BfaI CTAG 6 cut(s) 440, 465, 716, 1146, 1251, 1268
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 349
BfuI GTATCC 1 cut(s) 1043
BglI GCCNNNNNGGC 1 cut(s) 966
BglII AGATCT 2 cut(s) 436, 1428
BisI GCNGC 2 cut(s) 423, 1065
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 2 cut(s) 424, 1066
Bme1390I CCNGG 2 cut(s) 548, 1559
Bme18I GGWCC 1 cut(s) 831
BmeRI GACNNNNNGTC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 831
BmrFI CCNGG 2 cut(s) 548, 1559
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 1023
Bpu10I CCTNAGC 2 cut(s) 16, 1338
Bpu1102I GCTNAGC 1 cut(s) 296
BpuEI CTTGAG 3 cut(s) 132, 383, 641
BpuMI CCSGG 1 cut(s) 548
BsaI GGTCTC 2 cut(s) 178, 1351
Bsc4I CCNNNNNNNGG 3 cut(s) 904, 1042, 1043
Bse1I ACTGG 4 cut(s) 411, 833, 1029, 1512
Bse3DI GCAATG 1 cut(s) 608
BseBI CCWGG 1 cut(s) 1559
BseGI GGATG 2 cut(s) 47, 384
BseLI CCNNNNNNNGG 3 cut(s) 904, 1042, 1043
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 5 cut(s) 30, 476, 773, 1293, 1329
BseNI ACTGG 4 cut(s) 411, 833, 1029, 1512
BseRI GAGGAG 3 cut(s) 124, 127, 196
BseXI GCAGC 2 cut(s) 409, 1051
Bsh1236I CGCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 1 cut(s) 547
BsiWI CGTACG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 904, 1042, 1043
BsmAI GTCTC 2 cut(s) 178, 1351
BsmFI GGGAC 1 cut(s) 79
Bso31I GGTCTC 2 cut(s) 178, 1351
BsoBI CYCGRG 1 cut(s) 750
Bsp1286I GDGCHC 2 cut(s) 361, 529
Bsp1407I TGTACA 2 cut(s) 858, 1011
Bsp143I GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
Bsp1720I GCTNAGC 1 cut(s) 296
BspACI CCGC 4 cut(s) 214, 470, 617, 969
BspCNI CTCAG 5 cut(s) 29, 477, 772, 1294, 1330
BspFNI CGCG 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 3 cut(s) 763, 939, 1351
BspTNI GGTCTC 2 cut(s) 178, 1351
BsrDI GCAATG 1 cut(s) 608
BsrGI TGTACA 2 cut(s) 858, 1011
BsrI ACTGG 4 cut(s) 411, 833, 1029, 1512
BssMI GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
Bst2UI CCWGG 1 cut(s) 1559
Bst4CI ACNGT 4 cut(s) 169, 1126, 1565, 1616
Bst6I CTCTTC 2 cut(s) 1281, 1286
BstAUI TGTACA 2 cut(s) 858, 1011
BstC8I GCNNGC 2 cut(s) 231, 895
BstDEI CTNAG 6 cut(s) 16, 296, 485, 759, 1302, 1338
BstEII GGTNACC 1 cut(s) 1046
BstENI CCTNNNNNAGG 1 cut(s) 902
BstF5I GGATG 2 cut(s) 47, 384
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 6 cut(s) 384, 439, 758, 934, 1346, 1431
BstMAI GTCTC 2 cut(s) 178, 1351
BstMBI GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
BstMWI GCNNNNNNNGC 3 cut(s) 966, 1061, 1334
BstNI CCWGG 1 cut(s) 1559
BstPI GGTNACC 1 cut(s) 1046
BstSCI CCNGG 2 cut(s) 546, 1557
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 409, 1051
BstX2I RGATCY 3 cut(s) 436, 755, 1428
BstYI RGATCY 3 cut(s) 436, 755, 1428
BsuI GTATCC 1 cut(s) 1043
BtsCI GGATG 2 cut(s) 47, 384
BtsIMutI CAGTG 3 cut(s) 165, 278, 1519
Cac8I GCNNGC 2 cut(s) 231, 895
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 831
Csp6I GTAC 6 cut(s) 541, 730, 859, 1012, 1254, 1617
CviAII CATG 4 cut(s) 605, 1052, 1222, 1257
CviQI GTAC 6 cut(s) 541, 730, 859, 1012, 1254, 1617
DdeI CTNAG 6 cut(s) 16, 296, 485, 759, 1302, 1338
DpnI GATC 6 cut(s) 383, 438, 757, 933, 1345, 1430
DpnII GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
DriI GACNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 1281, 1286
Eam1105I GACNNNNNGTC 1 cut(s) 191
EarI CTCTTC 2 cut(s) 1281, 1286
Ecl136II GAGCTC 1 cut(s) 359
Eco24I GRGCYC 2 cut(s) 361, 529
Eco31I GGTCTC 2 cut(s) 178, 1351
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 831
Eco47III AGCGCT 1 cut(s) 347
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 3 cut(s) 909, 920, 1293
Eco88I CYCGRG 1 cut(s) 750
Eco91I GGTNACC 1 cut(s) 1046
EcoICRI GAGCTC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 902
EcoO65I GGTNACC 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 1391
EcoRII CCWGG 1 cut(s) 1557
EcoRV GATATC 1 cut(s) 222
EcoT22I ATGCAT 2 cut(s) 610, 1483
EcoT38I GRGCYC 2 cut(s) 361, 529
FaeI CATG 4 cut(s) 608, 1055, 1225, 1260
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 604, 1051, 1221, 1256
FauI CCCGC 1 cut(s) 624
FauNDI CATATG 1 cut(s) 1477
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 423, 1065
FokI GGATG 2 cut(s) 34, 391
FriOI GRGCYC 2 cut(s) 361, 529
Fsp4HI GCNGC 2 cut(s) 423, 1065
FspBI CTAG 6 cut(s) 440, 465, 716, 1146, 1251, 1268
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 423, 1065
HaeII RGCGCY 1 cut(s) 349
HapII CCGG 1 cut(s) 547
HhaI GCGC 1 cut(s) 348
Hin1II CATG 4 cut(s) 608, 1055, 1225, 1260
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 3 cut(s) 293, 891, 1326
HinfI GANTC 7 cut(s) 268, 487, 572, 677, 937, 1296, 1508
HpaII CCGG 1 cut(s) 547
HphI GGTGA 4 cut(s) 14, 118, 1094, 1577
Hpy166II GTNNAC 4 cut(s) 154, 172, 1012, 1400
Hpy188I TCNGA 7 cut(s) 691, 936, 1076, 1303, 1501, 1579, 1591
Hpy188III TCNNGA 7 cut(s) 362, 484, 750, 865, 929, 1036, 1455
Hpy8I GTNNAC 4 cut(s) 154, 172, 1012, 1400
HpyAV CCTTC 8 cut(s) 274, 499, 898, 1085, 1178, 1268, 1393, 1400
HpyCH4III ACNGT 4 cut(s) 169, 1126, 1565, 1616
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 7 cut(s) 425, 559, 608, 613, 770, 1481, 1612
HpyF10VI GCNNNNNNNGC 3 cut(s) 966, 1061, 1334
HpyF3I CTNAG 6 cut(s) 16, 296, 485, 759, 1302, 1338
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 4 cut(s) 608, 1055, 1225, 1260
HspAI GCGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 2 cut(s) 409, 1051
LweI GCATC 1 cut(s) 409
MaeI CTAG 6 cut(s) 440, 465, 716, 1146, 1251, 1268
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 977, 1046, 1375
MalI GATC 6 cut(s) 383, 438, 757, 933, 1345, 1430
MboI GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
MboII GAAGA 5 cut(s) 913, 1193, 1298, 1303, 1517
MfeI CAATTG 1 cut(s) 1607
MflI RGATCY 3 cut(s) 436, 755, 1428
MhlI GDGCHC 2 cut(s) 361, 529
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 2 cut(s) 786, 1334
Mph1103I ATGCAT 2 cut(s) 610, 1483
MseI TTAA 8 cut(s) 324, 627, 819, 956, 1128, 1371, 1415, 1548
MslI CAYNNNNRTG 2 cut(s) 159, 866
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 2 cut(s) 548, 1559
MunI CAATTG 1 cut(s) 1607
MvaI CCWGG 1 cut(s) 1559
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 966, 1061, 1334
NciI CCSGG 1 cut(s) 548
NdeI CATATG 1 cut(s) 1477
NdeII GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
NlaIII CATG 4 cut(s) 608, 1055, 1225, 1260
NmuCI GTSAC 1 cut(s) 1375
NsiI ATGCAT 2 cut(s) 610, 1483
PaeR7I CTCGAG 1 cut(s) 750
PfeI GAWTC 6 cut(s) 268, 572, 677, 937, 1296, 1508
Pfl23II CGTACG 1 cut(s) 540
PkrI GCNGC 2 cut(s) 424, 1066
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PshBI ATTAAT 2 cut(s) 819, 1548
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 1557
PspEI GGTNACC 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 1557
PspLI CGTACG 1 cut(s) 540
PspPI GGNCC 1 cut(s) 831
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 3 cut(s) 436, 755, 1428
RsaI GTAC 6 cut(s) 542, 731, 860, 1013, 1255, 1618
RsaNI GTAC 6 cut(s) 541, 730, 859, 1012, 1254, 1617
RseI CAYNNNNRTG 2 cut(s) 159, 866
SacI GAGCTC 1 cut(s) 361
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 8 cut(s) 324, 627, 819, 956, 1128, 1371, 1415, 1548
SatI GCNGC 2 cut(s) 423, 1065
Sau3AI GATC 6 cut(s) 381, 436, 755, 931, 1343, 1428
Sau96I GGNCC 1 cut(s) 831
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 2 cut(s) 548, 1559
SduI GDGCHC 2 cut(s) 361, 529
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 768
Sfr274I CTCGAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 831
SlaI CTCGAG 1 cut(s) 750
SmiMI CAYNNNNRTG 2 cut(s) 159, 866
SmlI CTYRAG 4 cut(s) 147, 362, 656, 750
SmoI CTYRAG 4 cut(s) 147, 362, 656, 750
SsiI CCGC 4 cut(s) 214, 470, 617, 969
SspI AATATT 1 cut(s) 736
SspMI CTAG 6 cut(s) 440, 465, 716, 1146, 1251, 1268
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 546, 1557
TaaI ACNGT 4 cut(s) 169, 1126, 1565, 1616
TaiI ACGT 1 cut(s) 546
TaqI TCGA 3 cut(s) 171, 257, 751
TatI WGTACW 3 cut(s) 858, 1011, 1253
TfiI GAWTC 6 cut(s) 268, 572, 677, 937, 1296, 1508
Tru1I TTAA 8 cut(s) 324, 627, 819, 956, 1128, 1371, 1415, 1548
Tru9I TTAA 8 cut(s) 324, 627, 819, 956, 1128, 1371, 1415, 1548
TscAI CASTG 3 cut(s) 172, 278, 1519
TseFI GTSAC 1 cut(s) 1375
TseI GCWGC 2 cut(s) 422, 1064
Tsp45I GTSAC 1 cut(s) 1375
TspDTI ATGAA 5 cut(s) 665, 815, 1153, 1404, 1518
TspRI CASTG 3 cut(s) 172, 278, 1519
VpaK11BI GGWCC 1 cut(s) 831
VspI ATTAAT 2 cut(s) 819, 1548
XagI CCTNNNNNAGG 1 cut(s) 902
XapI RAATTY 2 cut(s) 1039, 1391
XhoI CTCGAG 1 cut(s) 750
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 6 cut(s) 440, 465, 716, 1146, 1251, 1268
Zsp2I ATGCAT 2 cut(s) 610, 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.