Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014361

Physical Location & Seq

Genomic Coordinates Reverse (-)

17897613 .. 17901646

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G121900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGCCTCTCCAAACTTCTGTGCACCACCACCACCACAACCTCCCTCTCTCCTCATCCCTCTCCTACTCCACTCTCCTCCCATGCAAAATTCCAACTTTGCCCCTCCCAAGTTCCATAAATTTCCAAAGACTCCCCTCCATCTCCTGCTCCATATCCCAAGTCCACAACTATGGCACTGTGGACTACGAGAGAAGACCCATGGTCAAATGGAACGCGATATATCGGAAAATATCGCTCACGGATGACCCTGAAGTGCGCTCTGCTGACGTGTTGAACCAGTGGGAGAAGGAGGGTAGGAAGCTCACCAAGTGGGAGCTTTGTAGGGTGGTCAAAGAGTTGAGGAAGTACAAGCGTTATGACAGAGCTCTTGAGGTGTATGATTGGATGAGCAACAGAGGAGAGAGGTTTAGAATATCCACAAGTGATGCTGCAATTCAACTAGATTTAGTTGCTAAAGTTCGGGGAGTTGCTAGTGCTGAAAATTACTTCCTGAGCCTGCCAGATACTTTAAAAGACAGGAGAATATATGGGGCTCTGCTCAATGCCTATGTTCGCACTAGAATGAAAGAGAAGGCAGAATCTTTACTTGATAAAATGAGAAGTAAAGGTCATGCGCTGCAATCGCTTCCATTTAATGTAATGATGACTCTCTATATGAACCTCAAGGAGTATGATAAAGTTGATTCGATTATTTCTGAAATGATGGAGAAAAACATCCAGCTTGATATATACTCCTACAATATCTGGTTATCATCTCGTGGCTCCCAAGGATCTGAAGAACGGATGGAACAGGTATTTGAACAGATGAAACTGGACAGAACCGTTAATCCCAACTGGACGACTTTCAGCACAATGGCTACAATGTACATCAAGATGGGGCAGCTTGAAAAGGCTGAAGCTTGCCTGAAGAAGGTTGAGAGTAGAATCACAGGTCGTGATCGGATACCTTATCATTATCTTTTAAGTCTCTATGGTAATGTTGGCAACAAAGAGGAGCTTTATCGGGTATGGAACATATACAAATCAAGTTTTCCCAGTATTCCAAATTTGGGATACCATGCTATCATGTCTTCGCTACTCAGAGTAGGTGATGTTGAAGGGGCAGAGAAGATTTATGAGGAATGGTTGACGGTTAAGTCAACTTACGACCCTCGAATTGCAAATGTTTTCATAGCTTATTATATTAAAGACGGGGACTTTGAGAAAGCCCAAAGTTTCTATGACCACATGGTTGATGTAGGAGGAAAACCTAATTCGACTACATGGGAGACCCTTGCTGAAGGGCATATTGAAGAGCAGAGAATTTCTGAGGCATTATCCTGCTGGAAAGAAGCTTTTTCTGCAGAGGGATCAAAGAGTTGGAGGCCAAAGCCCGTAAATGTGTCTGCCTTCCTTGAACTCTGTGAGCAAGAAGCCAATTCGGTAAGCAAAGAGTTTTTCATGGGACTTTTGAAGCAGTCAGGACAGCTTAAAAATAAGTCATATGCATCACTTATAGGCTTAGCTGATGAAGATGTTAGTGATGATGATCTATCATTAAAGAAAGATAGAACTAATATTACAAAGGACGATGATGACGAGAAAGAAGCAGGTGATGGGTCCGAATTGCTTTTGAACGAATTGCAGGGTACTACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR TPR_8

Protein Analysis

547

Amino Acids

62.84

Weight (kDa)

6.2

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02150
fragaria_vesca	FvH4_7g09350
malus_domestica	MD02G1219200.v1.1 MD07G1097800.v1.1
prunus_persica	Prupe.2G121900_v2.0.a1
pyrus_communis	pycom02g18110 pycom07g08050
rosa_chinensis	RchiOBHm_Chr1g0346001
rosa_laevigata	RLG00000028826
rosa_multiflora	Rmu_sc0008115.1_g000003
rosa_roxburghii	Rroxscaffold_4G00308950
rosa_samantha	Rh1AG196500 Rh1BG162000 Rh1CG181400 Rh1DG192300
rosa_wichuraiana	Rw1G016400 Rw1G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1580
AasI	GACNNNNNNGTC	1 cut(s)	1135
Acc36I	ACCTGC	1 cut(s)	1580
AccII	CGCG	1 cut(s)	215
AclWI	GGATC	2 cut(s)	778, 1357
AcsI	RAATTY	4 cut(s)	87, 118, 1045, 1302
AcuI	CTGAAG	5 cut(s)	270, 795, 915, 926, 1299
AdeI	CACNNNGTG	1 cut(s)	309
AfaI	GTAC	3 cut(s)	347, 866, 1630
AfiI	CCNNNNNNNGG	2 cut(s)	910, 1049
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	9 cut(s)	274, 437, 800, 887, 1097, 1292, 1397, 1453, 1615
AhdI	GACNNNNNGTC	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	268
AloI	GAACNNNNNNTCC	2 cut(s)	811, 843
Alw21I	GWGCWC	2 cut(s)	24, 367
Alw26I	GTCTC	2 cut(s)	971, 1262
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	778, 1357
AoxI	GGCC	1 cut(s)	1364
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	428, 616, 880
ApoI	RAATTY	4 cut(s)	87, 118, 1045, 1302
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
AspLEI	GCGC	2 cut(s)	258, 616
AspS9I	GGNCC	1 cut(s)	1599
AsuHPI	GGTGA	3 cut(s)	295, 1100, 1604
AvaII	GGWCC	1 cut(s)	1599
BaeGI	GKGCMC	1 cut(s)	24
BanII	GRGCYC	2 cut(s)	367, 535
BauI	CACGAG	1 cut(s)	756
BbsI	GAAGAC	2 cut(s)	199, 1062
Bbv12I	GWGCWC	2 cut(s)	24, 367
BbvI	GCAGC	3 cut(s)	415, 603, 892
BccI	CCATC	5 cut(s)	146, 697, 778, 868, 1589
BciVI	GTATCC	2 cut(s)	936, 1046
BcoDI	GTCTC	2 cut(s)	971, 1262
BfaI	CTAG	3 cut(s)	440, 471, 558
BfmI	CTRYAG	1 cut(s)	1341
BfuAI	ACCTGC	1 cut(s)	1580
BfuI	GTATCC	2 cut(s)	936, 1046
BisI	GCNGC	3 cut(s)	429, 617, 881
BlpI	GCTNAGC	1 cut(s)	1501
BlsI	GCNGC	3 cut(s)	430, 618, 882
Bme18I	GGWCC	1 cut(s)	1599
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	1599
BmiI	GGNNCC	2 cut(s)	763, 1600
BmrI	ACTGGG	1 cut(s)	1029
BmsI	GCATC	2 cut(s)	415, 1496
BmuI	ACTGGG	1 cut(s)	1029
BpiI	GAAGAC	2 cut(s)	199, 1062
Bpu10I	CCTNAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	1501
BpuEI	CTTGAG	2 cut(s)	389, 647
BsaBI	GATNNNNATC	1 cut(s)	1527
BsaI	GGTCTC	1 cut(s)	1262
BsaJI	CCNNGG	2 cut(s)	198, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	910, 1049
Bse1I	ACTGG	4 cut(s)	277, 816, 839, 1035
Bse8I	GATNNNNATC	1 cut(s)	1527
BseDI	CCNNGG	2 cut(s)	198, 766
BseGI	GGATG	5 cut(s)	53, 247, 390, 714, 789
BseJI	GATNNNNATC	1 cut(s)	1527
BseLI	CCNNNNNNNGG	2 cut(s)	910, 1049
BseMII	CTCAG	3 cut(s)	482, 1093, 1299
BseNI	ACTGG	4 cut(s)	277, 816, 839, 1035
BseRI	GAGGAG	4 cut(s)	40, 65, 411, 1007
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	415, 603, 892
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	1366
BsiHKAI	GWGCWC	2 cut(s)	24, 367
BslFI	GGGAC	2 cut(s)	1208, 1458
BslI	CCNNNNNNNGG	2 cut(s)	910, 1049
BsmAI	GTCTC	2 cut(s)	971, 1262
BsmFI	GGGAC	2 cut(s)	1208, 1458
BsnI	GGCC	1 cut(s)	1366
Bso31I	GGTCTC	1 cut(s)	1262
Bsp1286I	GDGCHC	3 cut(s)	24, 367, 535
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	4 cut(s)	770, 937, 1349, 1528
Bsp1720I	GCTNAGC	1 cut(s)	1501
Bsp19I	CCATGG	1 cut(s)	198
BspANI	GGCC	1 cut(s)	1366
BspCNI	CTCAG	3 cut(s)	483, 1092, 1300
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	763, 1600
BspMAI	CTGCAG	1 cut(s)	1345
BspMI	ACCTGC	1 cut(s)	1580
BspPI	GGATC	2 cut(s)	778, 1357
BspQI	GCTCTTC	1 cut(s)	1287
BspTNI	GGTCTC	1 cut(s)	1262
BsrGI	TGTACA	1 cut(s)	864
BsrI	ACTGG	4 cut(s)	277, 816, 839, 1035
BssECI	CCNNGG	2 cut(s)	198, 766
BssMI	GATC	4 cut(s)	770, 937, 1349, 1528
BssSI	CACGAG	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	198, 766
Bst2BI	CACGAG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	178, 823, 1132
Bst6I	CTCTTC	1 cut(s)	1287
BstAUI	TGTACA	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	497, 901
BstDEI	CTNAG	4 cut(s)	491, 1079, 1308, 1501
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	5 cut(s)	53, 247, 390, 714, 789
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	258, 616
BstKTI	GATC	4 cut(s)	773, 940, 1352, 1531
BstMAI	GTCTC	2 cut(s)	971, 1262
BstMBI	GATC	4 cut(s)	770, 937, 1349, 1528
BstMWI	GCNNNNNNNGC	2 cut(s)	622, 1340
BstSFI	CTRYAG	1 cut(s)	1341
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	3 cut(s)	415, 603, 892
BstV2I	GAAGAC	2 cut(s)	199, 1062
BstX2I	RGATCY	1 cut(s)	770
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	770
BsuI	GTATCC	2 cut(s)	936, 1046
BsuRI	GGCC	1 cut(s)	1366
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	5 cut(s)	53, 247, 390, 714, 789
BtsIMutI	CAGTG	2 cut(s)	174, 284
BveI	ACCTGC	1 cut(s)	1580
Cac8I	GCNNGC	2 cut(s)	497, 901
CfoI	GCGC	2 cut(s)	258, 616
Cfr13I	GGNCC	1 cut(s)	1599
Csp6I	GTAC	3 cut(s)	346, 865, 1629
CviAII	CATG	8 cut(s)	81, 199, 611, 1058, 1066, 1228, 1263, 1441
CviQI	GTAC	3 cut(s)	346, 865, 1629
DdeI	CTNAG	4 cut(s)	491, 1079, 1308, 1501
DpnI	GATC	4 cut(s)	772, 939, 1351, 1530
DpnII	GATC	4 cut(s)	770, 937, 1349, 1528
DraI	TTTAAA	1 cut(s)	510
DraIII	CACNNNGTG	1 cut(s)	309
DrdI	GACNNNNNNGTC	1 cut(s)	1135
DriI	GACNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	1135
Eam1104I	CTCTTC	1 cut(s)	1287
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	1287
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	198, 766
Eco24I	GRGCYC	2 cut(s)	367, 535
Eco31I	GGTCTC	1 cut(s)	1262
Eco47I	GGWCC	1 cut(s)	1599
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	5 cut(s)	270, 795, 915, 926, 1299
EcoICRI	GAGCTC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoT14I	CCWWGG	2 cut(s)	198, 766
EcoT22I	ATGCAT	1 cut(s)	1489
EcoT38I	GRGCYC	2 cut(s)	367, 535
ErhI	CCWWGG	2 cut(s)	198, 766
FaeI	CATG	8 cut(s)	84, 202, 614, 1061, 1069, 1231, 1266, 1444
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	2 cut(s)	1208, 1458
FatI	CATG	8 cut(s)	80, 198, 610, 1057, 1065, 1227, 1262, 1440
FauNDI	CATATG	1 cut(s)	1483
Fnu4HI	GCNGC	3 cut(s)	429, 617, 881
FokI	GGATG	5 cut(s)	40, 254, 397, 701, 796
FriOI	GRGCYC	2 cut(s)	367, 535
Fsp4HI	GCNGC	3 cut(s)	429, 617, 881
FspBI	CTAG	3 cut(s)	440, 471, 558
GlaI	GCGC	2 cut(s)	257, 615
GluI	GCNGC	3 cut(s)	429, 617, 881
HaeIII	GGCC	1 cut(s)	1366
HhaI	GCGC	2 cut(s)	258, 616
Hin1II	CATG	8 cut(s)	84, 202, 614, 1061, 1069, 1231, 1266, 1444
Hin6I	GCGC	2 cut(s)	256, 614
HinP1I	GCGC	2 cut(s)	256, 614
HincII	GTYRAC	2 cut(s)	1128, 1140
HindII	GTYRAC	2 cut(s)	1128, 1140
HindIII	AAGCTT	2 cut(s)	897, 1332
HinfI	GANTC	5 cut(s)	129, 578, 646, 683, 924
HphI	GGTGA	3 cut(s)	295, 1100, 1604
Hpy166II	GTNNAC	5 cut(s)	22, 163, 181, 1128, 1140
Hpy188I	TCNGA	7 cut(s)	225, 697, 775, 942, 1082, 1309, 1603
Hpy188III	TCNNGA	5 cut(s)	368, 490, 871, 935, 1461
Hpy8I	GTNNAC	5 cut(s)	22, 163, 181, 1128, 1140
HpyAV	CCTTC	6 cut(s)	280, 565, 904, 1091, 1274, 1399
HpyCH4III	ACNGT	3 cut(s)	178, 823, 1132
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	8 cut(s)	22, 84, 431, 619, 1160, 1343, 1487, 1624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	622, 1340
HpyF3I	CTNAG	4 cut(s)	491, 1079, 1308, 1501
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	8 cut(s)	84, 202, 614, 1061, 1069, 1231, 1266, 1444
HspAI	GCGC	2 cut(s)	256, 614
Kzo9I	GATC	4 cut(s)	770, 937, 1349, 1528
LguI	GCTCTTC	1 cut(s)	1287
LmnI	GCTCC	4 cut(s)	152, 313, 767, 994
Lsp1109I	GCAGC	3 cut(s)	415, 603, 892
LweI	GCATC	2 cut(s)	415, 1496
MaeI	CTAG	3 cut(s)	440, 471, 558
MaeII	ACGT	1 cut(s)	267
MalI	GATC	4 cut(s)	772, 939, 1351, 1530
MboI	GATC	4 cut(s)	770, 937, 1349, 1528
MboII	GAAGA	7 cut(s)	204, 788, 919, 1062, 1120, 1304, 1523
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	3 cut(s)	24, 367, 535
MlyI	GAGTC	2 cut(s)	123, 640
MmeI	TCCRAC	2 cut(s)	116, 1340
Mph1103I	ATGCAT	1 cut(s)	1489
MseI	TTAA	8 cut(s)	509, 633, 825, 962, 1134, 1185, 1470, 1538
MslI	CAYNNNNRTG	3 cut(s)	168, 560, 872
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	622, 1340
NcoI	CCATGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	1483
NdeII	GATC	4 cut(s)	770, 937, 1349, 1528
NlaIII	CATG	8 cut(s)	84, 202, 614, 1061, 1069, 1231, 1266, 1444
NlaIV	GGNNCC	2 cut(s)	763, 1600
NsiI	ATGCAT	1 cut(s)	1489
PaqCI	CACCTGC	1 cut(s)	1580
PciSI	GCTCTTC	1 cut(s)	1287
PcsI	WCGNNNNNNNCGW	1 cut(s)	1575
PfeI	GAWTC	3 cut(s)	578, 683, 924
PkrI	GCNGC	3 cut(s)	430, 618, 882
PleI	GAGTC	2 cut(s)	123, 640
PpsI	GAGTC	2 cut(s)	123, 640
Psp124BI	GAGCTC	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	763, 1600
PspPI	GGNCC	1 cut(s)	1599
PsrI	GAACNNNNNNTAC	2 cut(s)	1543, 1575
PstI	CTGCAG	1 cut(s)	1345
PsuI	RGATCY	1 cut(s)	770
RsaI	GTAC	3 cut(s)	347, 866, 1630
RsaNI	GTAC	3 cut(s)	346, 865, 1629
RseI	CAYNNNNRTG	3 cut(s)	168, 560, 872
SacI	GAGCTC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	1287
SaqAI	TTAA	8 cut(s)	509, 633, 825, 962, 1134, 1185, 1470, 1538
SatI	GCNGC	3 cut(s)	429, 617, 881
Sau3AI	GATC	4 cut(s)	770, 937, 1349, 1528
Sau96I	GGNCC	1 cut(s)	1599
SchI	GAGTC	2 cut(s)	123, 640
SduI	GDGCHC	3 cut(s)	24, 367, 535
SfaNI	GCATC	2 cut(s)	415, 1496
SfcI	CTRYAG	1 cut(s)	1341
SinI	GGWCC	1 cut(s)	1599
SmiMI	CAYNNNNRTG	3 cut(s)	168, 560, 872
SmlI	CTYRAG	2 cut(s)	368, 662
SmoI	CTYRAG	2 cut(s)	368, 662
SspI	AATATT	1 cut(s)	1558
SspMI	CTAG	3 cut(s)	440, 471, 558
SstI	GAGCTC	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	198, 766
TaaI	ACNGT	3 cut(s)	178, 823, 1132
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	686, 1153, 1256
TatI	WGTACW	2 cut(s)	345, 864
TfiI	GAWTC	3 cut(s)	578, 683, 924
Tru1I	TTAA	8 cut(s)	509, 633, 825, 962, 1134, 1185, 1470, 1538
Tru9I	TTAA	8 cut(s)	509, 633, 825, 962, 1134, 1185, 1470, 1538
TscAI	CASTG	2 cut(s)	181, 284
TseI	GCWGC	3 cut(s)	428, 616, 880
TspDTI	ATGAA	6 cut(s)	578, 671, 821, 1159, 1429, 1524
TspGWI	ACGGA	2 cut(s)	254, 796
TspRI	CASTG	2 cut(s)	181, 284
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	1599
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	4 cut(s)	87, 118, 1045, 1302
XspI	CTAG	3 cut(s)	440, 471, 558
Zsp2I	ATGCAT	1 cut(s)	1489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.