Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02150 |
| fragaria_vesca | FvH4_7g09350 |
| malus_domestica | MD02G1219200.v1.1 MD07G1097800.v1.1 |
| prunus_persica | Prupe.2G121900_v2.0.a1 |
| pyrus_communis | pycom02g18110 pycom07g08050 |
| rosa_chinensis | RchiOBHm_Chr1g0346001 |
| rosa_laevigata | RLG00000028826 |
| rosa_multiflora | Rmu_sc0008115.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00308950 |
| rosa_samantha | Rh1AG196500 Rh1BG162000 Rh1CG181400 Rh1DG192300 |
| rosa_wichuraiana | Rw1G016400 Rw1G016520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 174, 854 |
| AciI | CCGC | 4 cut(s) | 33, 217, 473, 550 |
| AclWI | GGATC | 4 cut(s) | 766, 775, 942, 1354 |
| AcsI | RAATTY | 5 cut(s) | 81, 993, 1042, 1299, 1394 |
| AcuI | CTGAAG | 2 cut(s) | 912, 1296 |
| AfaI | GTAC | 6 cut(s) | 344, 734, 863, 1016, 1258, 1621 |
| AfeI | AGCGCT | 1 cut(s) | 350 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 549, 907, 1046 |
| AgsI | TTSAA | 7 cut(s) | 271, 434, 508, 797, 1232, 1394, 1606 |
| AjnI | CCWGG | 1 cut(s) | 1560 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 808, 840 |
| AluBI | AGCT | 8 cut(s) | 255, 298, 313, 362, 718, 896, 1331, 1528 |
| AluI | AGCT | 8 cut(s) | 255, 298, 313, 362, 718, 896, 1331, 1528 |
| Alw21I | GWGCWC | 2 cut(s) | 257, 364 |
| Alw26I | GTCTC | 1 cut(s) | 1354 |
| AlwI | GGATC | 4 cut(s) | 766, 775, 942, 1354 |
| Aor51HI | AGCGCT | 1 cut(s) | 350 |
| AoxI | GGCC | 2 cut(s) | 188, 1266 |
| ApeKI | GCWGC | 2 cut(s) | 229, 425 |
| ApoI | RAATTY | 5 cut(s) | 81, 993, 1042, 1299, 1394 |
| AseI | ATTAAT | 1 cut(s) | 1374 |
| AspLEI | GCGC | 1 cut(s) | 351 |
| AspS9I | GGNCC | 3 cut(s) | 189, 834, 1267 |
| AsuC2I | CCSGG | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 5 cut(s) | 14, 22, 118, 1097, 1424 |
| AvaII | GGWCC | 1 cut(s) | 834 |
| BanII | GRGCYC | 3 cut(s) | 257, 364, 532 |
| BauI | CACGAG | 1 cut(s) | 753 |
| Bbv12I | GWGCWC | 2 cut(s) | 257, 364 |
| BbvCI | CCTCAGC | 1 cut(s) | 1341 |
| BbvI | GCAGC | 2 cut(s) | 216, 412 |
| BccI | CCATC | 6 cut(s) | 94, 137, 200, 694, 865, 1580 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 600, 634 |
| BciT130I | CCWGG | 1 cut(s) | 1562 |
| BclI | TGATCA | 1 cut(s) | 384 |
| BcnI | CCSGG | 1 cut(s) | 245 |
| BcoDI | GTCTC | 1 cut(s) | 1354 |
| BfaI | CTAG | 7 cut(s) | 357, 443, 468, 719, 1149, 1254, 1515 |
| BfmI | CTRYAG | 1 cut(s) | 771 |
| BfoI | RGCGCY | 1 cut(s) | 352 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 969 |
| BglII | AGATCT | 1 cut(s) | 439 |
| BisI | GCNGC | 2 cut(s) | 230, 426 |
| BlpI | GCTNAGC | 1 cut(s) | 299 |
| BlsI | GCNGC | 2 cut(s) | 231, 427 |
| Bme1390I | CCNGG | 2 cut(s) | 245, 1562 |
| Bme18I | GGWCC | 1 cut(s) | 834 |
| BmgT120I | GGNCC | 3 cut(s) | 189, 834, 1267 |
| BmrFI | CCNGG | 2 cut(s) | 245, 1562 |
| BmsI | GCATC | 1 cut(s) | 412 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1341 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 299 |
| BpuEI | CTTGAG | 2 cut(s) | 386, 644 |
| BpuMI | CCSGG | 1 cut(s) | 245 |
| BsaAI | YACGTR | 1 cut(s) | 547 |
| BsaI | GGTCTC | 1 cut(s) | 1354 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 549, 907, 1046 |
| Bse118I | RCCGGY | 1 cut(s) | 120 |
| Bse1I | ACTGG | 2 cut(s) | 414, 836 |
| Bse3DI | GCAATG | 1 cut(s) | 611 |
| BseBI | CCWGG | 1 cut(s) | 1562 |
| BseGI | GGATG | 1 cut(s) | 387 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 549, 907, 1046 |
| BseMI | GCAATG | 1 cut(s) | 611 |
| BseMII | CTCAG | 4 cut(s) | 479, 776, 1296, 1332 |
| BseNI | ACTGG | 2 cut(s) | 414, 836 |
| BseRI | GAGGAG | 5 cut(s) | 124, 127, 130, 199, 1307 |
| BseXI | GCAGC | 2 cut(s) | 216, 412 |
| BshFI | GGCC | 2 cut(s) | 190, 1268 |
| BsiHKAI | GWGCWC | 2 cut(s) | 257, 364 |
| BsiSI | CCGG | 2 cut(s) | 121, 245 |
| BslFI | GGGAC | 1 cut(s) | 51 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 549, 907, 1046 |
| BsmAI | GTCTC | 1 cut(s) | 1354 |
| BsmFI | GGGAC | 1 cut(s) | 51 |
| BsnI | GGCC | 2 cut(s) | 190, 1268 |
| Bso31I | GGTCTC | 1 cut(s) | 1354 |
| Bsp1286I | GDGCHC | 3 cut(s) | 257, 364, 532 |
| Bsp1407I | TGTACA | 2 cut(s) | 861, 1014 |
| Bsp143I | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 299 |
| BspACI | CCGC | 4 cut(s) | 33, 217, 473, 550 |
| BspANI | GGCC | 2 cut(s) | 190, 1268 |
| BspCNI | CTCAG | 4 cut(s) | 480, 775, 1297, 1333 |
| BspHI | TCATGA | 1 cut(s) | 636 |
| BspMAI | CTGCAG | 1 cut(s) | 775 |
| BspPI | GGATC | 4 cut(s) | 766, 775, 942, 1354 |
| BspQI | GCTCTTC | 1 cut(s) | 262 |
| BspTNI | GGTCTC | 1 cut(s) | 1354 |
| BsrDI | GCAATG | 1 cut(s) | 611 |
| BsrFI | RCCGGY | 1 cut(s) | 120 |
| BsrGI | TGTACA | 2 cut(s) | 861, 1014 |
| BsrI | ACTGG | 2 cut(s) | 414, 836 |
| BssAI | RCCGGY | 1 cut(s) | 120 |
| BssMI | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| BssSI | CACGAG | 1 cut(s) | 753 |
| Bst2BI | CACGAG | 1 cut(s) | 753 |
| Bst2UI | CCWGG | 1 cut(s) | 1562 |
| Bst4CI | ACNGT | 4 cut(s) | 172, 820, 1129, 1568 |
| Bst6I | CTCTTC | 2 cut(s) | 49, 262 |
| BstAUI | TGTACA | 2 cut(s) | 861, 1014 |
| BstBAI | YACGTR | 1 cut(s) | 547 |
| BstC8I | GCNNGC | 3 cut(s) | 234, 552, 898 |
| BstDEI | CTNAG | 5 cut(s) | 299, 488, 762, 1305, 1341 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 905 |
| BstF5I | GGATG | 1 cut(s) | 387 |
| BstH2I | RGCGCY | 1 cut(s) | 352 |
| BstHHI | GCGC | 1 cut(s) | 351 |
| BstKTI | GATC | 6 cut(s) | 387, 442, 761, 770, 937, 1349 |
| BstMAI | GTCTC | 1 cut(s) | 1354 |
| BstMBI | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 969, 1064, 1337 |
| BstNI | CCWGG | 1 cut(s) | 1562 |
| BstSCI | CCNGG | 2 cut(s) | 243, 1560 |
| BstSFI | CTRYAG | 1 cut(s) | 771 |
| BstV1I | GCAGC | 2 cut(s) | 216, 412 |
| BstX2I | RGATCY | 3 cut(s) | 439, 758, 767 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 164 |
| BstYI | RGATCY | 3 cut(s) | 439, 758, 767 |
| BsuRI | GGCC | 2 cut(s) | 190, 1268 |
| BtsCI | GGATG | 1 cut(s) | 387 |
| BtsI | GCAGTG | 1 cut(s) | 979 |
| BtsIMutI | CAGTG | 4 cut(s) | 168, 281, 979, 1573 |
| Cac8I | GCNNGC | 3 cut(s) | 234, 552, 898 |
| CciI | TCATGA | 1 cut(s) | 636 |
| CfoI | GCGC | 1 cut(s) | 351 |
| Cfr10I | RCCGGY | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 3 cut(s) | 189, 834, 1267 |
| Csp6I | GTAC | 6 cut(s) | 343, 733, 862, 1015, 1257, 1620 |
| CviAII | CATG | 5 cut(s) | 608, 637, 1055, 1225, 1260 |
| CviQI | GTAC | 6 cut(s) | 343, 733, 862, 1015, 1257, 1620 |
| DdeI | CTNAG | 5 cut(s) | 299, 488, 762, 1305, 1341 |
| DpnI | GATC | 6 cut(s) | 386, 441, 760, 769, 936, 1348 |
| DpnII | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| Eam1104I | CTCTTC | 2 cut(s) | 49, 262 |
| EarI | CTCTTC | 2 cut(s) | 49, 262 |
| Ecl136II | GAGCTC | 2 cut(s) | 255, 362 |
| Eco24I | GRGCYC | 3 cut(s) | 257, 364, 532 |
| Eco31I | GGTCTC | 1 cut(s) | 1354 |
| Eco32I | GATATC | 1 cut(s) | 225 |
| Eco47I | GGWCC | 1 cut(s) | 834 |
| Eco47III | AGCGCT | 1 cut(s) | 350 |
| Eco53kI | GAGCTC | 2 cut(s) | 255, 362 |
| Eco57I | CTGAAG | 2 cut(s) | 912, 1296 |
| EcoICRI | GAGCTC | 2 cut(s) | 255, 362 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 905 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1267 |
| EcoRI | GAATTC | 1 cut(s) | 1394 |
| EcoRII | CCWGG | 1 cut(s) | 1560 |
| EcoRV | GATATC | 1 cut(s) | 225 |
| EcoT22I | ATGCAT | 1 cut(s) | 613 |
| EcoT38I | GRGCYC | 3 cut(s) | 257, 364, 532 |
| FaeI | CATG | 5 cut(s) | 611, 640, 1058, 1228, 1263 |
| FaqI | GGGAC | 1 cut(s) | 51 |
| FatI | CATG | 5 cut(s) | 607, 636, 1054, 1224, 1259 |
| FauI | CCCGC | 1 cut(s) | 543 |
| FauNDI | CATATG | 1 cut(s) | 1480 |
| FbaI | TGATCA | 1 cut(s) | 384 |
| FblI | GTMKAC | 2 cut(s) | 174, 854 |
| Fnu4HI | GCNGC | 2 cut(s) | 230, 426 |
| FokI | GGATG | 1 cut(s) | 394 |
| FriOI | GRGCYC | 3 cut(s) | 257, 364, 532 |
| Fsp4HI | GCNGC | 2 cut(s) | 230, 426 |
| FspBI | CTAG | 7 cut(s) | 357, 443, 468, 719, 1149, 1254, 1515 |
| GlaI | GCGC | 1 cut(s) | 350 |
| GluI | GCNGC | 2 cut(s) | 230, 426 |
| HaeII | RGCGCY | 1 cut(s) | 352 |
| HaeIII | GGCC | 2 cut(s) | 190, 1268 |
| HapII | CCGG | 2 cut(s) | 121, 245 |
| HhaI | GCGC | 1 cut(s) | 351 |
| Hin1II | CATG | 5 cut(s) | 611, 640, 1058, 1228, 1263 |
| Hin6I | GCGC | 1 cut(s) | 349 |
| HinP1I | GCGC | 1 cut(s) | 349 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HindIII | AAGCTT | 3 cut(s) | 296, 894, 1329 |
| HinfI | GANTC | 8 cut(s) | 248, 271, 490, 575, 680, 921, 940, 1511 |
| HpaII | CCGG | 2 cut(s) | 121, 245 |
| HphI | GGTGA | 5 cut(s) | 14, 22, 118, 1097, 1424 |
| Hpy166II | GTNNAC | 3 cut(s) | 175, 855, 1015 |
| Hpy188I | TCNGA | 8 cut(s) | 694, 939, 1041, 1079, 1306, 1504, 1582, 1594 |
| Hpy188III | TCNNGA | 6 cut(s) | 365, 487, 637, 868, 932, 1458 |
| Hpy8I | GTNNAC | 3 cut(s) | 175, 855, 1015 |
| HpyAV | CCTTC | 6 cut(s) | 277, 502, 1088, 1181, 1271, 1403 |
| HpyCH4III | ACNGT | 4 cut(s) | 172, 820, 1129, 1568 |
| HpyCH4IV | ACGT | 2 cut(s) | 546, 1385 |
| HpyCH4V | TGCA | 7 cut(s) | 428, 562, 611, 616, 773, 1484, 1615 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 969, 1064, 1337 |
| HpyF3I | CTNAG | 5 cut(s) | 299, 488, 762, 1305, 1341 |
| HpySE526I | ACGT | 2 cut(s) | 546, 1385 |
| Hsp92II | CATG | 5 cut(s) | 611, 640, 1058, 1228, 1263 |
| HspAI | GCGC | 1 cut(s) | 349 |
| Ksp22I | TGATCA | 1 cut(s) | 384 |
| Kzo9I | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| LguI | GCTCTTC | 1 cut(s) | 262 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| Lsp1109I | GCAGC | 2 cut(s) | 216, 412 |
| LweI | GCATC | 1 cut(s) | 412 |
| MaeI | CTAG | 7 cut(s) | 357, 443, 468, 719, 1149, 1254, 1515 |
| MaeII | ACGT | 2 cut(s) | 546, 1385 |
| MaeIII | GTNAC | 2 cut(s) | 980, 1378 |
| MalI | GATC | 6 cut(s) | 386, 441, 760, 769, 936, 1348 |
| MboI | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| MboII | GAAGA | 4 cut(s) | 36, 249, 1196, 1520 |
| MfeI | CAATTG | 1 cut(s) | 1610 |
| MflI | RGATCY | 3 cut(s) | 439, 758, 767 |
| MhlI | GDGCHC | 3 cut(s) | 257, 364, 532 |
| MlyI | GAGTC | 1 cut(s) | 499 |
| MmeI | TCCRAC | 2 cut(s) | 789, 1337 |
| Mph1103I | ATGCAT | 1 cut(s) | 613 |
| MseI | TTAA | 6 cut(s) | 327, 630, 822, 959, 1131, 1374 |
| MslI | CAYNNNNRTG | 3 cut(s) | 162, 869, 1376 |
| MspI | CCGG | 2 cut(s) | 121, 245 |
| MspR9I | CCNGG | 2 cut(s) | 245, 1562 |
| MunI | CAATTG | 1 cut(s) | 1610 |
| MvaI | CCWGG | 1 cut(s) | 1562 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 969, 1064, 1337 |
| NciI | CCSGG | 1 cut(s) | 245 |
| NdeI | CATATG | 1 cut(s) | 1480 |
| NdeII | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| NlaIII | CATG | 5 cut(s) | 611, 640, 1058, 1228, 1263 |
| NmuCI | GTSAC | 1 cut(s) | 1378 |
| NsiI | ATGCAT | 1 cut(s) | 613 |
| PagI | TCATGA | 1 cut(s) | 636 |
| PciSI | GCTCTTC | 1 cut(s) | 262 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 257 |
| PfeI | GAWTC | 7 cut(s) | 248, 271, 575, 680, 921, 940, 1511 |
| PkrI | GCNGC | 2 cut(s) | 231, 427 |
| PleI | GAGTC | 1 cut(s) | 498 |
| PpsI | GAGTC | 1 cut(s) | 498 |
| Ppu21I | YACGTR | 1 cut(s) | 547 |
| PshBI | ATTAAT | 1 cut(s) | 1374 |
| Psp124BI | GAGCTC | 2 cut(s) | 257, 364 |
| Psp6I | CCWGG | 1 cut(s) | 1560 |
| PspGI | CCWGG | 1 cut(s) | 1560 |
| PspPI | GGNCC | 3 cut(s) | 189, 834, 1267 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 197, 229 |
| PstI | CTGCAG | 1 cut(s) | 775 |
| PsuI | RGATCY | 3 cut(s) | 439, 758, 767 |
| RsaI | GTAC | 6 cut(s) | 344, 734, 863, 1016, 1258, 1621 |
| RsaNI | GTAC | 6 cut(s) | 343, 733, 862, 1015, 1257, 1620 |
| RseI | CAYNNNNRTG | 3 cut(s) | 162, 869, 1376 |
| SacI | GAGCTC | 2 cut(s) | 257, 364 |
| SalI | GTCGAC | 1 cut(s) | 173 |
| SapI | GCTCTTC | 1 cut(s) | 262 |
| SaqAI | TTAA | 6 cut(s) | 327, 630, 822, 959, 1131, 1374 |
| SatI | GCNGC | 2 cut(s) | 230, 426 |
| Sau3AI | GATC | 6 cut(s) | 384, 439, 758, 767, 934, 1346 |
| Sau96I | GGNCC | 3 cut(s) | 189, 834, 1267 |
| SchI | GAGTC | 1 cut(s) | 499 |
| ScrFI | CCNGG | 2 cut(s) | 245, 1562 |
| SduI | GDGCHC | 3 cut(s) | 257, 364, 532 |
| SfaNI | GCATC | 1 cut(s) | 412 |
| SfcI | CTRYAG | 1 cut(s) | 771 |
| SinI | GGWCC | 1 cut(s) | 834 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 162, 869, 1376 |
| SmlI | CTYRAG | 2 cut(s) | 365, 659 |
| SmoI | CTYRAG | 2 cut(s) | 365, 659 |
| SsiI | CCGC | 4 cut(s) | 33, 217, 473, 550 |
| SspI | AATATT | 1 cut(s) | 1036 |
| SspMI | CTAG | 7 cut(s) | 357, 443, 468, 719, 1149, 1254, 1515 |
| SstI | GAGCTC | 2 cut(s) | 257, 364 |
| StyD4I | CCNGG | 2 cut(s) | 243, 1560 |
| TaaI | ACNGT | 4 cut(s) | 172, 820, 1129, 1568 |
| TaiI | ACGT | 2 cut(s) | 549, 1388 |
| TaqI | TCGA | 4 cut(s) | 174, 251, 260, 1092 |
| TatI | WGTACW | 4 cut(s) | 342, 861, 1014, 1256 |
| TfiI | GAWTC | 7 cut(s) | 248, 271, 575, 680, 921, 940, 1511 |
| Tru1I | TTAA | 6 cut(s) | 327, 630, 822, 959, 1131, 1374 |
| Tru9I | TTAA | 6 cut(s) | 327, 630, 822, 959, 1131, 1374 |
| TscAI | CASTG | 4 cut(s) | 175, 281, 979, 1573 |
| TseFI | GTSAC | 1 cut(s) | 1378 |
| TseI | GCWGC | 2 cut(s) | 229, 425 |
| Tsp45I | GTSAC | 1 cut(s) | 1378 |
| TspDTI | ATGAA | 4 cut(s) | 668, 818, 1156, 1521 |
| TspGWI | ACGGA | 1 cut(s) | 97 |
| TspRI | CASTG | 4 cut(s) | 175, 281, 979, 1573 |
| VpaK11BI | GGWCC | 1 cut(s) | 834 |
| VspI | ATTAAT | 1 cut(s) | 1374 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 905 |
| XapI | RAATTY | 5 cut(s) | 81, 993, 1042, 1299, 1394 |
| XmiI | GTMKAC | 2 cut(s) | 174, 854 |
| XspI | CTAG | 7 cut(s) | 357, 443, 468, 719, 1149, 1254, 1515 |
| Zsp2I | ATGCAT | 1 cut(s) | 613 |