Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008115.1

Orthogroup ID

OG0014361

Physical Location & Seq

Genomic Coordinates Forward (+)

11299 .. 14190

Gene Structure 2892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008115.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

atgcttctccaaacctcacctcaccacctcaccgcctctctctcttcctccctctcctactctcgtcccctcccctccaaaattccatctctgaccctccctcgttccgtaaattaccaccggctcaccatctcctcctcctcctccatatcccaagcccacaactatggcactgtcgactacgagaggaggcccatcgtcaaatggaacgccatataccgcaagatatcgctgctggctgacgacccggaatcgagctcttcgagtgttttgaatcagtgggagaaggagggcaagaagcttagcaagtgggagctttgtagggttgttaaggagttgaggaagtacaagcgctatgctagagctcttgaggtgtatgattggatgatcaacagagcagagaggtttagattttccagtagtgatgctgcaattcaattagatctagttgctaaagttaggggagtttctagtgcggaaaattacttcctgagtctgccagatactttgaaggacaggagaatatatggggctctgctcaatgcctacgtgcgggcaaaaatgcaagaaaaggcagaatctttgcttgataaaatgagaagtaaaggtcatgcattgcactcgcttccatttaatgtcatgatgacactctatatgaacctcaaggagtatgagaaagtggaatccattatttctgaaatgatggagaaaaacattcagctagatatatactcgtacaatatctggttatcatctcgtggatctcagggatctgcagaacgaatggaacaggtatttgaacagatgaagttggacagaaccgttaatcccaactggaccacattcagcacaatgtctacaatgtacatcaagatggggctgtttgacaaggctgaagcttgcctgaagaaggttgagagtagaatcacgggtcgggatcggattccttaccattatcttttaagcctttatggcagtgttggtaacaaagacgaaatttatcgggtatggaatgtgtacaaatcaagttttcccaatattccgaatttgggctaccatgctattatcgcttctctaatcagagtaggtgatgtcgaaggggcagaaaagatgtttgaggaatggctgactgttaagccaacttatgaccctagaattgccaatcttttcattgtttcttacatagaagaaggggattttgataaagcccagagtttctttgacaacatggttgaagcaggaggaaaacctaattctagtacatgggaggcccttgctgaagggcatataaaagaggagagaatttctgaggcattatcctgctggaaagaagctttttctgctgagggatcaaagagttggagaccaaagcccattaatgtgactaccttccttgaattctgtgagcaggaaggtgatttgagaagcaaagaggtttttttgggattgttgaggcagtcaggacatctaaaaaataagtcatatgcactacttcttggcttatctgatgaagattctagtgataatgagctatcattagagaaagatagaaccgacgataaccaggacagtgatgagaaatcagatgatgggtctgatatgcttttgaaccaattgcagagtaccctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR TPR_8

Protein Analysis

543

Amino Acids

62.28

Weight (kDa)

6.28

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02150
fragaria_vesca	FvH4_7g09350
malus_domestica	MD02G1219200.v1.1 MD07G1097800.v1.1
prunus_persica	Prupe.2G121900_v2.0.a1
pyrus_communis	pycom02g18110 pycom07g08050
rosa_chinensis	RchiOBHm_Chr1g0346001
rosa_laevigata	RLG00000028826
rosa_multiflora	Rmu_sc0008115.1_g000003
rosa_roxburghii	Rroxscaffold_4G00308950
rosa_samantha	Rh1AG196500 Rh1BG162000 Rh1CG181400 Rh1DG192300
rosa_wichuraiana	Rw1G016400 Rw1G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	177, 857
AciI	CCGC	4 cut(s)	33, 220, 476, 553
AclWI	GGATC	4 cut(s)	769, 778, 945, 1357
AcsI	RAATTY	5 cut(s)	81, 996, 1045, 1302, 1397
AcuI	CTGAAG	3 cut(s)	915, 926, 1299
AfaI	GTAC	6 cut(s)	347, 737, 866, 1019, 1261, 1624
AfeI	AGCGCT	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	552, 910, 1049
AgsI	TTSAA	7 cut(s)	274, 437, 511, 800, 1235, 1397, 1609
AjnI	CCWGG	1 cut(s)	1563
AloI	GAACNNNNNNTCC	2 cut(s)	811, 843
AluBI	AGCT	8 cut(s)	258, 301, 316, 365, 721, 899, 1334, 1531
AluI	AGCT	8 cut(s)	258, 301, 316, 365, 721, 899, 1334, 1531
Alw21I	GWGCWC	2 cut(s)	260, 367
Alw26I	GTCTC	1 cut(s)	1357
AlwI	GGATC	4 cut(s)	769, 778, 945, 1357
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	2 cut(s)	191, 1269
ApeKI	GCWGC	2 cut(s)	232, 428
ApoI	RAATTY	5 cut(s)	81, 996, 1045, 1302, 1397
AseI	ATTAAT	1 cut(s)	1377
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	192, 837, 1270
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	6 cut(s)	9, 14, 22, 118, 1100, 1427
AvaII	GGWCC	1 cut(s)	837
BanII	GRGCYC	3 cut(s)	260, 367, 535
BauI	CACGAG	1 cut(s)	756
Bbv12I	GWGCWC	2 cut(s)	260, 367
BbvCI	CCTCAGC	1 cut(s)	1344
BbvI	GCAGC	2 cut(s)	219, 415
BccI	CCATC	6 cut(s)	94, 137, 203, 697, 868, 1583
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	1 cut(s)	1565
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	1357
BfaI	CTAG	7 cut(s)	360, 446, 471, 722, 1152, 1257, 1518
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	972
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	2 cut(s)	233, 429
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	2 cut(s)	234, 430
Bme1390I	CCNGG	2 cut(s)	248, 1565
Bme18I	GGWCC	1 cut(s)	837
BmgT120I	GGNCC	3 cut(s)	192, 837, 1270
BmrFI	CCNGG	2 cut(s)	248, 1565
BmsI	GCATC	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	1344
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	389, 647
BpuMI	CCSGG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	550
BsaI	GGTCTC	1 cut(s)	1357
Bsc4I	CCNNNNNNNGG	3 cut(s)	552, 910, 1049
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	417, 839
Bse3DI	GCAATG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	1565
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	552, 910, 1049
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	4 cut(s)	482, 779, 1299, 1335
BseNI	ACTGG	2 cut(s)	417, 839
BseRI	GAGGAG	6 cut(s)	124, 127, 130, 133, 202, 1310
BseXI	GCAGC	2 cut(s)	219, 415
BshFI	GGCC	2 cut(s)	193, 1271
BsiHKAI	GWGCWC	2 cut(s)	260, 367
BsiSI	CCGG	2 cut(s)	121, 248
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	552, 910, 1049
BsmAI	GTCTC	1 cut(s)	1357
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	193, 1271
Bso31I	GGTCTC	1 cut(s)	1357
Bsp1286I	GDGCHC	3 cut(s)	260, 367, 535
Bsp1407I	TGTACA	2 cut(s)	864, 1017
Bsp143I	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	4 cut(s)	33, 220, 476, 553
BspANI	GGCC	2 cut(s)	193, 1271
BspCNI	CTCAG	4 cut(s)	483, 778, 1300, 1336
BspHI	TCATGA	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	4 cut(s)	769, 778, 945, 1357
BspQI	GCTCTTC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	1357
BsrDI	GCAATG	1 cut(s)	614
BsrFI	RCCGGY	1 cut(s)	120
BsrGI	TGTACA	2 cut(s)	864, 1017
BsrI	ACTGG	2 cut(s)	417, 839
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
BssSI	CACGAG	1 cut(s)	756
Bst2BI	CACGAG	1 cut(s)	756
Bst2UI	CCWGG	1 cut(s)	1565
Bst4CI	ACNGT	4 cut(s)	175, 823, 1132, 1571
Bst6I	CTCTTC	2 cut(s)	49, 265
BstAUI	TGTACA	2 cut(s)	864, 1017
BstBAI	YACGTR	1 cut(s)	550
BstC8I	GCNNGC	3 cut(s)	237, 555, 901
BstDEI	CTNAG	5 cut(s)	302, 491, 765, 1308, 1344
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	6 cut(s)	390, 445, 764, 773, 940, 1352
BstMAI	GTCTC	1 cut(s)	1357
BstMBI	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
BstMWI	GCNNNNNNNGC	3 cut(s)	972, 1067, 1340
BstNI	CCWGG	1 cut(s)	1565
BstSCI	CCNGG	2 cut(s)	246, 1563
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	219, 415
BstX2I	RGATCY	3 cut(s)	442, 761, 770
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	3 cut(s)	442, 761, 770
BsuRI	GGCC	2 cut(s)	193, 1271
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	982
BtsIMutI	CAGTG	4 cut(s)	171, 284, 982, 1576
Cac8I	GCNNGC	3 cut(s)	237, 555, 901
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	192, 837, 1270
Csp6I	GTAC	6 cut(s)	346, 736, 865, 1018, 1260, 1623
CviAII	CATG	5 cut(s)	611, 640, 1058, 1228, 1263
CviQI	GTAC	6 cut(s)	346, 736, 865, 1018, 1260, 1623
DdeI	CTNAG	5 cut(s)	302, 491, 765, 1308, 1344
DpnI	GATC	6 cut(s)	389, 444, 763, 772, 939, 1351
DpnII	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
Eam1104I	CTCTTC	2 cut(s)	49, 265
EarI	CTCTTC	2 cut(s)	49, 265
Ecl136II	GAGCTC	2 cut(s)	258, 365
Eco24I	GRGCYC	3 cut(s)	260, 367, 535
Eco31I	GGTCTC	1 cut(s)	1357
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	837
Eco47III	AGCGCT	1 cut(s)	353
Eco53kI	GAGCTC	2 cut(s)	258, 365
Eco57I	CTGAAG	3 cut(s)	915, 926, 1299
EcoICRI	GAGCTC	2 cut(s)	258, 365
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoO109I	RGGNCCY	1 cut(s)	1270
EcoRI	GAATTC	1 cut(s)	1397
EcoRII	CCWGG	1 cut(s)	1563
EcoRV	GATATC	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	3 cut(s)	260, 367, 535
FaeI	CATG	5 cut(s)	614, 643, 1061, 1231, 1266
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	5 cut(s)	610, 639, 1057, 1227, 1262
FauI	CCCGC	1 cut(s)	546
FauNDI	CATATG	1 cut(s)	1483
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	2 cut(s)	177, 857
Fnu4HI	GCNGC	2 cut(s)	233, 429
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	3 cut(s)	260, 367, 535
Fsp4HI	GCNGC	2 cut(s)	233, 429
FspBI	CTAG	7 cut(s)	360, 446, 471, 722, 1152, 1257, 1518
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	233, 429
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	2 cut(s)	193, 1271
HapII	CCGG	2 cut(s)	121, 248
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	5 cut(s)	614, 643, 1061, 1231, 1266
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	3 cut(s)	299, 897, 1332
HinfI	GANTC	8 cut(s)	251, 274, 493, 578, 683, 924, 943, 1514
HpaII	CCGG	2 cut(s)	121, 248
HphI	GGTGA	6 cut(s)	9, 14, 22, 118, 1100, 1427
Hpy166II	GTNNAC	3 cut(s)	178, 858, 1018
Hpy188I	TCNGA	9 cut(s)	93, 697, 942, 1044, 1082, 1309, 1507, 1585, 1597
Hpy188III	TCNNGA	6 cut(s)	368, 490, 640, 871, 935, 1461
Hpy8I	GTNNAC	3 cut(s)	178, 858, 1018
Hpy99I	CGWCG	1 cut(s)	1559
HpyAV	CCTTC	8 cut(s)	280, 505, 904, 1091, 1184, 1274, 1399, 1406
HpyCH4III	ACNGT	4 cut(s)	175, 823, 1132, 1571
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	7 cut(s)	431, 565, 614, 619, 776, 1487, 1618
HpyF10VI	GCNNNNNNNGC	3 cut(s)	972, 1067, 1340
HpyF3I	CTNAG	5 cut(s)	302, 491, 765, 1308, 1344
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	5 cut(s)	614, 643, 1061, 1231, 1266
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	219, 415
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	7 cut(s)	360, 446, 471, 722, 1152, 1257, 1518
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	983, 1381
MalI	GATC	6 cut(s)	389, 444, 763, 772, 939, 1351
MboI	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
MboII	GAAGA	5 cut(s)	36, 252, 919, 1199, 1523
MfeI	CAATTG	1 cut(s)	1613
MflI	RGATCY	3 cut(s)	442, 761, 770
MhlI	GDGCHC	3 cut(s)	260, 367, 535
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	2 cut(s)	792, 1340
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	6 cut(s)	330, 633, 825, 962, 1134, 1377
MslI	CAYNNNNRTG	3 cut(s)	165, 872, 1379
MspI	CCGG	2 cut(s)	121, 248
MspR9I	CCNGG	2 cut(s)	248, 1565
MunI	CAATTG	1 cut(s)	1613
MvaI	CCWGG	1 cut(s)	1565
MwoI	GCNNNNNNNGC	3 cut(s)	972, 1067, 1340
NciI	CCSGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	1483
NdeII	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
NlaIII	CATG	5 cut(s)	614, 643, 1061, 1231, 1266
NmuCI	GTSAC	1 cut(s)	1381
NsiI	ATGCAT	1 cut(s)	616
PagI	TCATGA	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	7 cut(s)	251, 274, 578, 683, 924, 943, 1514
PkrI	GCNGC	2 cut(s)	234, 430
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	1377
Psp124BI	GAGCTC	2 cut(s)	260, 367
Psp6I	CCWGG	1 cut(s)	1563
PspGI	CCWGG	1 cut(s)	1563
PspPI	GGNCC	3 cut(s)	192, 837, 1270
PsrI	GAACNNNNNNTAC	2 cut(s)	200, 232
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	3 cut(s)	442, 761, 770
RsaI	GTAC	6 cut(s)	347, 737, 866, 1019, 1261, 1624
RsaNI	GTAC	6 cut(s)	346, 736, 865, 1018, 1260, 1623
RseI	CAYNNNNRTG	3 cut(s)	165, 872, 1379
SacI	GAGCTC	2 cut(s)	260, 367
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	6 cut(s)	330, 633, 825, 962, 1134, 1377
SatI	GCNGC	2 cut(s)	233, 429
Sau3AI	GATC	6 cut(s)	387, 442, 761, 770, 937, 1349
Sau96I	GGNCC	3 cut(s)	192, 837, 1270
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	248, 1565
SduI	GDGCHC	3 cut(s)	260, 367, 535
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	837
SmiMI	CAYNNNNRTG	3 cut(s)	165, 872, 1379
SmlI	CTYRAG	2 cut(s)	368, 662
SmoI	CTYRAG	2 cut(s)	368, 662
SsiI	CCGC	4 cut(s)	33, 220, 476, 553
SspI	AATATT	1 cut(s)	1039
SspMI	CTAG	7 cut(s)	360, 446, 471, 722, 1152, 1257, 1518
SstI	GAGCTC	2 cut(s)	260, 367
StyD4I	CCNGG	2 cut(s)	246, 1563
TaaI	ACNGT	4 cut(s)	175, 823, 1132, 1571
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	177, 254, 263, 1095
TatI	WGTACW	4 cut(s)	345, 864, 1017, 1259
TfiI	GAWTC	7 cut(s)	251, 274, 578, 683, 924, 943, 1514
Tru1I	TTAA	6 cut(s)	330, 633, 825, 962, 1134, 1377
Tru9I	TTAA	6 cut(s)	330, 633, 825, 962, 1134, 1377
TscAI	CASTG	4 cut(s)	178, 284, 982, 1576
TseFI	GTSAC	1 cut(s)	1381
TseI	GCWGC	2 cut(s)	232, 428
Tsp45I	GTSAC	1 cut(s)	1381
TspDTI	ATGAA	4 cut(s)	671, 821, 1159, 1524
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	4 cut(s)	178, 284, 982, 1576
VpaK11BI	GGWCC	1 cut(s)	837
VspI	ATTAAT	1 cut(s)	1377
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	5 cut(s)	81, 996, 1045, 1302, 1397
XmiI	GTMKAC	2 cut(s)	177, 857
XspI	CTAG	7 cut(s)	360, 446, 471, 722, 1152, 1257, 1518
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.