Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014361

Physical Location & Seq

Genomic Coordinates Forward (+)

30546432 .. 30549769

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTTGAAGCAGGAGGAAAACCTAATTCAAGTACATGGGAGGTCCTTGCTGAGGGGCATATAAAAGAGGAGAGAATTGCTGAGGCATTATCCTGCTGGAAAGAAGCTTTTTCTGCTGAGGGATCAAAGAGTTGGAGACCAAAGCCCATTAATGTGACTACCTTCCTTGAATTCTGTGAGCAAGAAGGTGATTTGAGAAGCAAAGAGGTTTTTTTGGGATTGTTGAGGCAGTCAGGGCATCTAAAACATAAGTCATATGCACTACTTCTTGGCTTATCTGATGAAGATTCTAGTGATAATGAGCTATCATTAGAGAAAGATAGAACCGACGATAACCAGGACAGTGACGAGAAATCAGACGATGGGTCTGATATGCTTTTGAACCGATTGCAGAGTACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR TPR_8

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

4.62

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02150
fragaria_vesca	FvH4_7g09350
malus_domestica	MD02G1219200.v1.1 MD07G1097800.v1.1
prunus_persica	Prupe.2G121900_v2.0.a1
pyrus_communis	pycom02g18110 pycom07g08050
rosa_chinensis	RchiOBHm_Chr1g0346001
rosa_laevigata	RLG00000028826
rosa_multiflora	Rmu_sc0008115.1_g000003
rosa_roxburghii	Rroxscaffold_4G00308950
rosa_samantha	Rh1AG196500 Rh1BG162000 Rh1CG181400 Rh1DG192300
rosa_wichuraiana	Rw1G016400 Rw1G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	2 cut(s)	34, 397
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	8, 30, 170, 382
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	2 cut(s)	107, 304
AluI	AGCT	2 cut(s)	107, 304
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	43
BbvCI	CCTCAGC	3 cut(s)	51, 81, 117
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	247
Bpu10I	CCTNAGC	3 cut(s)	51, 81, 117
BsaI	GGTCTC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	3 cut(s)	42, 72, 108
BseRI	GAGGAG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	122
BspCNI	CTCAG	3 cut(s)	43, 73, 109
BspPI	GGATC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	130
BssMI	GATC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	51, 81, 117
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 235
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	33, 396
CviAII	CATG	1 cut(s)	36
CviJI	RGCY	4 cut(s)	107, 145, 273, 304
CviKI_1	RGCY	4 cut(s)	107, 145, 273, 304
CviQI	GTAC	2 cut(s)	33, 396
DdeI	CTNAG	3 cut(s)	51, 81, 117
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	39
FaiI	YATR	7 cut(s)	37, 60, 62, 249, 256, 258, 374
FatI	CATG	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	256
FspBI	CTAG	1 cut(s)	291
Hin1II	CATG	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	280, 358, 370
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	172, 179
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	2 cut(s)	260, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 235
HpyF3I	CTNAG	3 cut(s)	51, 81, 117
Hsp92II	CATG	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	122
LpnPI	CCDG	5 cut(s)	82, 106, 219, 323, 350
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	154, 344
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	1 cut(s)	296
MluCI	AATT	3 cut(s)	25, 75, 170
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	8 cut(s)	8, 34, 46, 61, 76, 112, 199, 219
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	113, 235
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	154, 344
PfeI	GAWTC	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	43
PspPPI	RGGWCCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	34, 397
RsaNI	GTAC	2 cut(s)	33, 396
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	7 cut(s)	25, 45, 109, 164, 190, 210, 306
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	25, 75, 170
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	344
TasI	AATT	3 cut(s)	25, 75, 170
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	154, 344
Tsp45I	GTSAC	2 cut(s)	154, 344
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	150
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.