Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013711

Physical Location & Seq

Genomic Coordinates Reverse (-)

9891453 .. 9893341

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGAGGAGGCACCGTGCGTATTGATTTTCCGATCATCAACATCAAACCCTCTTCTTCTAGTACTGATACTAATAAAATTATTAGTAATATTCTTAATTTTCCAGTTTCAAACAGTTATGTTGGAGCTGTTAAACCCTCTCCTTGTTCAGCTTCACAGTGCTACTGTGGAAATGAAACTTGCAGGAAGAAATCAAAGCTTGTCTATGGAAACGAAGAGAAAAGAGCAAGTGGGTCTTTGATAAGCAGCTCTGTTTTTGGGTCTGTTCCTTCCCAATTTGAAGTCCAAACTGCAATTGCTTCACTTCTCAATTTTATACTTGGCGGAAATTCACCTCAGTCAGAGTTACAGTGGCTTCAGAAATTGGTGGATTCTTGTGTTACCAGAAAGTTACTGTCCTATGGACACAGAAAAGTTTATGATGCTTTCCAGTTGTTACAAGCAGATCCTTCTGTTCAGAGACTGGTGCTTTCCCTGTCCTCCGATAAAGCCCTATGGGATGCTATTACCAACAACGAGTTGGTCAAGAAGCTCCAAGAGCCACCAGCTGATTCAGAACCGGACTTGGCTGCCTGCATTATCGGGTGGATTATGGAGATGACCAAAGCAAAAGTTCTGGAACTCGTTGAGAAATTCCAATCACTTGTGTATGATGTGTTTCTACCTCGAGAGACCAAGGGAGGAAATCTAGAGGTCGAGAACAAGAACGAGTTTGAAGAGAAGGTTAGATCTTCACTGCTTCTCTCAATTGTGACCATCTTGATTGTGGTAGTCGCTCGACTTCAAAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.03

Weight (kDa)

8.14

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013711)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10480 FvH4_7g10480
malus_domestica	MD07G1110800.v1.1
prunus_persica	Prupe.2G134300_v2.0.a1
pyrus_communis	pycom07g09570
rosa_chinensis	RchiOBHm_Chr1g0348271
rosa_laevigata	RLG00000028671
rosa_multiflora	Rmu_sc0003661.1_g000002 Rmu_sc0007293.1_g000002 Rmu_sc0042680.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307060
rosa_rugosa	Rorug01G0194100 Rorug01G0194100
rosa_samantha	Rh1AG211100 Rh1BG177600 Rh1CG195500 Rh1DG207100
rosa_wichuraiana	Rw1G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	328, 632
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	111, 281, 716, 785
AluBI	AGCT	6 cut(s)	128, 152, 199, 249, 532, 548
AluI	AGCT	6 cut(s)	128, 152, 199, 249, 532, 548
Alw26I	GTCTC	2 cut(s)	454, 665
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	246, 569
ApoI	RAATTY	2 cut(s)	328, 632
AsuHPI	GGTGA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	666
BanI	GGYRCC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	258, 556
BccI	CCATC	1 cut(s)	764
BcoDI	GTCTC	2 cut(s)	454, 665
BfaI	CTAG	2 cut(s)	60, 689
BglII	AGATCT	1 cut(s)	728
BisI	GCNGC	2 cut(s)	247, 570
BlsI	GCNGC	2 cut(s)	248, 571
BmcAI	AGTACT	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	666
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	412, 490
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	3 cut(s)	104, 430, 468
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	3 cut(s)	104, 430, 468
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	258, 556
BshNI	GGYRCC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	1 cut(s)	560
BsmAI	GTCTC	2 cut(s)	454, 665
Bso31I	GGTCTC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	33, 445, 728
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	665
BsrI	ACTGG	3 cut(s)	104, 430, 468
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	3 cut(s)	33, 445, 728
BssT1I	CCWWGG	1 cut(s)	675
Bst4CI	ACNGT	6 cut(s)	16, 116, 159, 167, 351, 396
Bst6I	CTCTTC	3 cut(s)	58, 210, 711
BstC8I	GCNNGC	1 cut(s)	574
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	3 cut(s)	36, 448, 731
BstMAI	GTCTC	2 cut(s)	454, 665
BstMBI	GATC	3 cut(s)	33, 445, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	258, 556
BstX2I	RGATCY	2 cut(s)	445, 728
BstYI	RGATCY	2 cut(s)	445, 728
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	3 cut(s)	164, 356, 734
Cac8I	GCNNGC	1 cut(s)	574
CaiI	CAGNNNCTG	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	1 cut(s)	792
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	35, 447, 730
DpnII	GATC	3 cut(s)	33, 445, 728
Eam1104I	CTCTTC	3 cut(s)	58, 210, 711
EarI	CTCTTC	3 cut(s)	58, 210, 711
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	675
Eco31I	GGTCTC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	1 cut(s)	795
FaiI	YATR	9 cut(s)	120, 207, 317, 402, 420, 496, 593, 651, 793
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FatI	CATG	1 cut(s)	791
Fnu4HI	GCNGC	2 cut(s)	247, 570
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	247, 570
FspBI	CTAG	2 cut(s)	60, 689
GluI	GCNGC	2 cut(s)	247, 570
HapII	CCGG	1 cut(s)	560
Hin1II	CATG	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	371, 551
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	1 cut(s)	324
Hpy188I	TCNGA	6 cut(s)	33, 343, 360, 459, 484, 556
Hpy188III	TCNNGA	6 cut(s)	526, 617, 668, 689, 697, 760
HpyAV	CCTTC	3 cut(s)	279, 459, 715
HpyCH4III	ACNGT	6 cut(s)	16, 116, 159, 167, 351, 396
HpyCH4V	TGCA	3 cut(s)	183, 293, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	795
Kzo9I	GATC	3 cut(s)	33, 445, 728
LmnI	GCTCC	2 cut(s)	125, 537
Lsp1109I	GCAGC	2 cut(s)	258, 556
LweI	GCATC	2 cut(s)	412, 490
MaeI	CTAG	2 cut(s)	60, 689
MaeIII	GTNAC	5 cut(s)	345, 379, 390, 435, 751
MalI	GATC	3 cut(s)	35, 447, 730
MboI	GATC	3 cut(s)	33, 445, 728
MboII	GAAGA	6 cut(s)	45, 48, 199, 227, 723, 728
MfeI	CAATTG	2 cut(s)	294, 747
MflI	RGATCY	2 cut(s)	445, 728
MluCI	AATT	9 cut(s)	78, 97, 275, 294, 310, 328, 362, 632, 747
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	61, 148, 345, 490, 674, 675, 685
MseI	TTAA	2 cut(s)	96, 132
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	560
MunI	CAATTG	2 cut(s)	294, 747
MwoI	GCNNNNNNNGC	1 cut(s)	538
NdeII	GATC	3 cut(s)	33, 445, 728
NlaIII	CATG	1 cut(s)	795
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	371, 551
PkrI	GCNGC	2 cut(s)	248, 571
PspN4I	GGNNCC	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	445, 728
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	96, 132
SatI	GCNGC	2 cut(s)	247, 570
Sau3AI	GATC	3 cut(s)	33, 445, 728
ScaI	AGTACT	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	412, 490
Sfr274I	CTCGAG	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	9 cut(s)	78, 97, 275, 294, 310, 328, 362, 632, 747
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	60, 689
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	6 cut(s)	16, 116, 159, 167, 351, 396
TaqI	TCGA	3 cut(s)	667, 696, 778
TasI	AATT	9 cut(s)	78, 97, 275, 294, 310, 328, 362, 632, 747
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	371, 551
Tru1I	TTAA	2 cut(s)	96, 132
Tru9I	TTAA	2 cut(s)	96, 132
TscAI	CASTG	3 cut(s)	164, 356, 741
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	2 cut(s)	246, 569
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	164, 356, 741
XapI	RAATTY	2 cut(s)	328, 632
XbaI	TCTAGA	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	2 cut(s)	517, 763
XhoI	CTCGAG	1 cut(s)	666
XspI	CTAG	2 cut(s)	60, 689
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.