Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013711

Physical Location & Seq

Genomic Coordinates Reverse (-)

28345189 .. 28346580

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGAGGAGGAACCATACATATTGATTTTCCTATCATCCACATCAAACCCTCTTCTTCTAATACTACTGATAATAAAGTTATCAGTAATAATCTTAATTTTCCAGTTTCAAACAGTTATGTTGGAGCTGTTAAACCCTCTTGTTCTGCTTCACAGTGCTACTGTGGGAATGAAACTTGCAGGAAGAAATTAGAGCTTGTTTATGGAAAAGAAGAGAAAAGAGCAAGTGGGTCTTTGATTAGCAGCTCTGTTTTTGGGTCCGTTCCTTCCCAATTTGAAGTCCAAAGTGCAATTGCTGCACTTCTGAATTTTATGCTTGGGGTAAATTCATCCGAGTCAGACTTACAGTGGCTTCAGAAATTGTTGGATTCTTGTGTTACAAGAAAGTTACTGTCCTATGGACACAGAAAAGTTTATGATGCTTTCCAGTTGCTGCAATCTGATCCTTCTGTTCAGAGATTGGTGCTTTCCCTATCCTCTGATAAAGCCCTATGGGATGCTATTACCAACAACGAGTTGGTCAAGAAGCTCCAAGAGCCACCCGGTTCAGGCGTGCCTCAAAATTCAGACACAGAACCGGACTTGGTTGCCTGCATTATCAGGTGGATTATGGAGATGACAAAAGCGAAAGTTATGGAACTCGTTGAGAAATTCCAATCACTGGTGAATGATGTATTTCTACCTCGACAGACCAAGGGGGGAAATCCAGAAGTCGAGAACAAGAACGAGTTTGAAGAAAAGCTTAGATCTTCACTGCTTCTCTCAATTGTGACCCTCTTGATTGTGGTTGTCGCTCGACTCCAAAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.81

Weight (kDa)

7.57

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013711)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10480 FvH4_7g10480
malus_domestica	MD07G1110800.v1.1
prunus_persica	Prupe.2G134300_v2.0.a1
pyrus_communis	pycom07g09570
rosa_chinensis	RchiOBHm_Chr1g0348271
rosa_laevigata	RLG00000028671
rosa_multiflora	Rmu_sc0003661.1_g000002 Rmu_sc0007293.1_g000002 Rmu_sc0042680.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307060
rosa_rugosa	Rorug01G0194100 Rorug01G0194100
rosa_samantha	Rh1AG211100 Rh1BG177600 Rh1CG195500 Rh1DG207100
rosa_wichuraiana	Rw1G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	661
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	4 cut(s)	307, 325, 562, 650
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	548, 661
AgsI	TTSAA	3 cut(s)	111, 278, 734
AluBI	AGCT	5 cut(s)	128, 196, 246, 529, 742
AluI	AGCT	5 cut(s)	128, 196, 246, 529, 742
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	243, 296, 433
ApoI	RAATTY	4 cut(s)	307, 325, 562, 650
AspS9I	GGNCC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	255, 283, 420
BcnI	CCSGG	1 cut(s)	543
BglII	AGATCT	1 cut(s)	746
BisI	GCNGC	3 cut(s)	244, 297, 434
BlsI	GCNGC	3 cut(s)	245, 298, 435
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	13, 259
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	409, 487
BpuMI	CCSGG	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	693
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 661
Bse1I	ACTGG	3 cut(s)	104, 427, 666
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	3 cut(s)	36, 329, 502
BseLI	CCNNNNNNNGG	2 cut(s)	548, 661
BseNI	ACTGG	3 cut(s)	104, 427, 666
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	255, 283, 420
BsgI	GTGCAG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	543, 578
BslI	CCNNNNNNNGG	2 cut(s)	548, 661
Bsp143I	GATC	2 cut(s)	442, 746
BspLI	GGNNCC	2 cut(s)	13, 259
BspPI	GGATC	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	104, 427, 666
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	2 cut(s)	442, 746
BssT1I	CCWWGG	1 cut(s)	693
Bst4CI	ACNGT	5 cut(s)	116, 156, 164, 348, 393
Bst6I	CTCTTC	2 cut(s)	58, 207
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	554, 592
BstDEI	CTNAG	1 cut(s)	743
BstF5I	GGATG	3 cut(s)	36, 329, 502
BstKTI	GATC	2 cut(s)	445, 749
BstMBI	GATC	2 cut(s)	442, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 535
BstSCI	CCNGG	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	255, 283, 420
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	36, 329, 502
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	4 cut(s)	161, 353, 659, 752
Cac8I	GCNNGC	2 cut(s)	554, 592
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	258
CviAII	CATG	1 cut(s)	810
CviJI	RGCY	8 cut(s)	128, 196, 246, 352, 488, 529, 538, 742
CviKI_1	RGCY	8 cut(s)	128, 196, 246, 352, 488, 529, 538, 742
DdeI	CTNAG	1 cut(s)	743
DpnI	GATC	2 cut(s)	444, 748
DpnII	GATC	2 cut(s)	442, 746
Eam1104I	CTCTTC	2 cut(s)	58, 207
EarI	CTCTTC	2 cut(s)	58, 207
Eco130I	CCWWGG	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	1 cut(s)	813
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 726, 758
FatI	CATG	1 cut(s)	809
Fnu4HI	GCNGC	3 cut(s)	244, 297, 434
FokI	GGATG	3 cut(s)	23, 316, 509
Fsp4HI	GCNGC	3 cut(s)	244, 297, 434
GluI	GCNGC	3 cut(s)	244, 297, 434
HapII	CCGG	2 cut(s)	543, 578
Hin1II	CATG	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	3 cut(s)	335, 368, 798
HpaII	CCGG	2 cut(s)	543, 578
HphI	GGTGA	1 cut(s)	676
Hpy188I	TCNGA	8 cut(s)	306, 334, 340, 357, 442, 456, 481, 568
Hpy188III	TCNNGA	4 cut(s)	523, 707, 715, 778
HpyAV	CCTTC	2 cut(s)	276, 456
HpyCH4III	ACNGT	5 cut(s)	116, 156, 164, 348, 393
HpyCH4V	TGCA	5 cut(s)	180, 290, 299, 436, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 535
HpyF3I	CTNAG	1 cut(s)	743
Hsp92II	CATG	1 cut(s)	813
Kzo9I	GATC	2 cut(s)	442, 746
LmnI	GCTCC	2 cut(s)	125, 534
Lsp1109I	GCAGC	3 cut(s)	255, 283, 420
LweI	GCATC	2 cut(s)	409, 487
MaeIII	GTNAC	3 cut(s)	376, 387, 769
MalI	GATC	2 cut(s)	444, 748
MboI	GATC	2 cut(s)	442, 746
MboII	GAAGA	6 cut(s)	45, 48, 196, 224, 741, 746
MfeI	CAATTG	2 cut(s)	291, 765
MflI	RGATCY	1 cut(s)	746
MlyI	GAGTC	2 cut(s)	344, 792
MmeI	TCCRAC	2 cut(s)	103, 345
MnlI	CCTC	6 cut(s)	61, 148, 487, 567, 693, 785
MseI	TTAA	2 cut(s)	96, 132
MspI	CCGG	2 cut(s)	543, 578
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	2 cut(s)	291, 765
MwoI	GCNNNNNNNGC	2 cut(s)	296, 535
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	442, 746
NlaIII	CATG	1 cut(s)	813
NlaIV	GGNNCC	2 cut(s)	13, 259
NmuCI	GTSAC	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	3 cut(s)	245, 298, 435
PleI	GAGTC	2 cut(s)	343, 792
PpsI	GAGTC	2 cut(s)	343, 792
PspN4I	GGNNCC	2 cut(s)	13, 259
PspPI	GGNCC	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	96, 132
SatI	GCNGC	3 cut(s)	244, 297, 434
Sau3AI	GATC	2 cut(s)	442, 746
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	344, 792
ScrFI	CCNGG	1 cut(s)	543
SetI	ASST	7 cut(s)	130, 198, 248, 531, 605, 685, 744
SfaNI	GCATC	2 cut(s)	409, 487
SinI	GGWCC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	5 cut(s)	116, 156, 164, 348, 393
TaqI	TCGA	3 cut(s)	685, 714, 796
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	96, 132
Tru9I	TTAA	2 cut(s)	96, 132
TscAI	CASTG	4 cut(s)	161, 353, 666, 759
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	3 cut(s)	243, 296, 433
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	186, 318
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	4 cut(s)	161, 353, 666, 759
Van91I	CCANNNNNTGG	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	4 cut(s)	307, 325, 562, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.