Rroxscaffold_4G00307060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013711
Physical Location & Seq
Forward (+)
28132593 .. 28134365
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307060.1

Sequence Viewer

Length: 837 bp
ATGGGGGGAGGAACCATGCATATTGATTTTCCTATCATCCACATCAAACCCTCTTCTTCTAATACTACTGATAATAAAATTATCAGTAATAATCTTAATTTTCCAGTTTCAAACAGTTATGTTGGAGCTGTTAAACCCTCTTGTTCTGCTTCACAGTGCTACTGTGGGAATGAAACTTGCAGGAAGAAATTAGAGCTTGTTTATGGAAAAGAAGAGAAAAGAGCAAGTGGGCCTTTGATTAGCAGCTCTGTTTTTGGGTCTGTTCCTTCCCAATTTGAAGTTCAAAGTGCAATTGCTGCACTTCTGAATTTTATGCTTGGGGTAAATTCATCCGAGTCAGACTTACAGTGGCTTCAGAAATTGTTGGATTCTTGTGTTACAAGAAAGTTACTGTCCTATGGACACAGAAAAGTTTATGATGCTTTCCAGTTGCTGCAATCTGATCGTTCTGTTCAGTTTAGAAATCTAGCTTGGAATGCAGAGATTGGTGCTTTCCTATCCTCTGATAAAGCCCTATGGGATGCTATTACCAACAACGAGTTGGTCAAGAAGCTCCAAGAGCCACCCGGTTCAGATGTGCCTCAAAATTCAAACACAGAACCGGACTTGGTTTCCTGCATTATCAGGTGGATTATGGAGATGACAAAAGCGAAAGTTATGGAACTAGTTGAGAAATTCCAATCACTGGTGAATGATGTATTTCTACCTCGACAGACCAAGGGGGAAAATCCAGAAGTCGAGAACAACAACGAGTTTGAAGAAAAGCTTAGATCTTCACTGCTTCTCTCAATTGTGACCCTCTTGATTGTGGTTGTCGCTCGACTCCAAAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.96

Weight (kDa)

6.35

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 685
AcsI RAATTY 4 cut(s) 307, 325, 586, 674
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 5 cut(s) 111, 278, 284, 591, 758
AhlI ACTAGT 1 cut(s) 664
AjuI GAANNNNNNNTTGG 4 cut(s) 264, 296, 454, 486
AluBI AGCT 6 cut(s) 128, 196, 246, 470, 553, 766
AluI AGCT 6 cut(s) 128, 196, 246, 470, 553, 766
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 3 cut(s) 243, 296, 433
ApoI RAATTY 4 cut(s) 307, 325, 586, 674
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 700
BbvI GCAGC 3 cut(s) 255, 283, 420
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BcnI CCSGG 1 cut(s) 567
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 2 cut(s) 467, 665
BglII AGATCT 1 cut(s) 770
BisI GCNGC 3 cut(s) 244, 297, 434
BlsI GCNGC 3 cut(s) 245, 298, 435
Bme1390I CCNGG 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 409, 511
BpuMI CCSGG 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 601
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse1I ACTGG 3 cut(s) 104, 427, 690
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 3 cut(s) 36, 329, 526
BseLI CCNNNNNNNGG 1 cut(s) 685
BseNI ACTGG 3 cut(s) 104, 427, 690
BseXI GCAGC 3 cut(s) 255, 283, 420
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 232
BsiSI CCGG 2 cut(s) 567, 602
BslI CCNNNNNNNGG 1 cut(s) 685
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 442, 770
BspANI GGCC 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 13
BsrI ACTGG 3 cut(s) 104, 427, 690
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 2 cut(s) 442, 770
BssT1I CCWWGG 1 cut(s) 717
Bst4CI ACNGT 5 cut(s) 116, 156, 164, 348, 393
Bst6I CTCTTC 2 cut(s) 58, 207
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 767
BstF5I GGATG 3 cut(s) 36, 329, 526
BstKTI GATC 2 cut(s) 445, 773
BstMBI GATC 2 cut(s) 442, 770
BstMWI GCNNNNNNNGC 3 cut(s) 296, 476, 559
BstSCI CCNGG 1 cut(s) 565
BstV1I GCAGC 3 cut(s) 255, 283, 420
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 3 cut(s) 36, 329, 526
BtsI GCAGTG 1 cut(s) 776
BtsIMutI CAGTG 4 cut(s) 161, 353, 683, 776
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 2 cut(s) 16, 834
DdeI CTNAG 1 cut(s) 767
DpnI GATC 2 cut(s) 444, 772
DpnII GATC 2 cut(s) 442, 770
Eam1104I CTCTTC 2 cut(s) 58, 207
EarI CTCTTC 2 cut(s) 58, 207
Eco130I CCWWGG 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 717
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 2 cut(s) 19, 837
FalI AAGNNNNNCTT 4 cut(s) 217, 249, 750, 782
FatI CATG 2 cut(s) 15, 833
Fnu4HI GCNGC 3 cut(s) 244, 297, 434
FokI GGATG 3 cut(s) 23, 316, 533
Fsp4HI GCNGC 3 cut(s) 244, 297, 434
FspBI CTAG 2 cut(s) 467, 665
GluI GCNGC 3 cut(s) 244, 297, 434
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 567, 602
Hin1II CATG 2 cut(s) 19, 837
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 3 cut(s) 335, 368, 822
HpaII CCGG 2 cut(s) 567, 602
HphI GGTGA 1 cut(s) 700
Hpy188I TCNGA 7 cut(s) 306, 334, 340, 357, 442, 505, 574
Hpy188III TCNNGA 4 cut(s) 547, 731, 739, 802
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 5 cut(s) 116, 156, 164, 348, 393
HpyCH4V TGCA 7 cut(s) 19, 180, 290, 299, 436, 479, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 476, 559
HpyF3I CTNAG 1 cut(s) 767
Hsp92II CATG 2 cut(s) 19, 837
Kzo9I GATC 2 cut(s) 442, 770
LmnI GCTCC 2 cut(s) 125, 558
LpnPI CCDG 9 cut(s) 117, 166, 440, 580, 610, 615, 628, 671, 744
Lsp1109I GCAGC 3 cut(s) 255, 283, 420
LweI GCATC 2 cut(s) 409, 511
MaeI CTAG 2 cut(s) 467, 665
MaeIII GTNAC 3 cut(s) 376, 387, 793
MalI GATC 2 cut(s) 444, 772
MboI GATC 2 cut(s) 442, 770
MboII GAAGA 6 cut(s) 45, 48, 196, 224, 765, 770
MfeI CAATTG 2 cut(s) 291, 789
MflI RGATCY 1 cut(s) 770
MlyI GAGTC 2 cut(s) 344, 816
MmeI TCCRAC 2 cut(s) 103, 345
MnlI CCTC 6 cut(s) 61, 148, 511, 591, 717, 809
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 2 cut(s) 96, 132
MspI CCGG 2 cut(s) 567, 602
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 2 cut(s) 291, 789
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 3 cut(s) 296, 476, 559
NciI CCSGG 1 cut(s) 567
NdeII GATC 2 cut(s) 442, 770
NlaIII CATG 2 cut(s) 19, 837
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 793
NsiI ATGCAT 1 cut(s) 21
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 685
PkrI GCNGC 3 cut(s) 245, 298, 435
PleI GAGTC 2 cut(s) 343, 816
PpsI GAGTC 2 cut(s) 343, 816
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 770
SaqAI TTAA 2 cut(s) 96, 132
SatI GCNGC 3 cut(s) 244, 297, 434
Sau3AI GATC 2 cut(s) 442, 770
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 2 cut(s) 344, 816
ScrFI CCNGG 1 cut(s) 567
SetI ASST 8 cut(s) 130, 198, 248, 472, 555, 629, 709, 768
SfaNI GCATC 2 cut(s) 409, 511
SpeI ACTAGT 1 cut(s) 664
SspMI CTAG 2 cut(s) 467, 665
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 5 cut(s) 116, 156, 164, 348, 393
TaqI TCGA 3 cut(s) 709, 738, 820
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 96, 132
Tru9I TTAA 2 cut(s) 96, 132
TscAI CASTG 4 cut(s) 161, 353, 690, 783
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 3 cut(s) 243, 296, 433
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 2 cut(s) 186, 318
TspRI CASTG 4 cut(s) 161, 353, 690, 783
Van91I CCANNNNNTGG 1 cut(s) 685
XapI RAATTY 4 cut(s) 307, 325, 586, 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 2 cut(s) 467, 665
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.