pycom07g09570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013711
Physical Location & Seq
Reverse (-)
8848546 .. 8848927
382 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09570.1

Sequence Viewer

Length: 276 bp
ATGAGCATGGAAAAAGGAAGCCATAGCCAATTAGCCATGGGAGGAGGAACCATGCCTATCATCCACGTCAGACATTCTTCTTCTTCTTCCTCCTCCTCAAACAATCTTCCAGTTCCATCTAGTAGCAGCGTTCAAGTGGGACCCATCACACCCTCGTGCACTGGTTCATACTGCTTCTGTGACTCTGGGAGTGAGACCTGCAGAAAACAAGAACAAGACAAGAGAGCAAGTCGGACGTCGTTGCTGAGCTCCGTTTTTGGTCCAGTTCCGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.45

Weight (kDa)

8.48

Isoelectric Point (pI)

90.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 134
AjiI CACGTC 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 154
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw21I GWGCWC 2 cut(s) 161, 251
Alw26I GTCTC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 157
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 140, 260
AvaII GGWCC 2 cut(s) 140, 260
BaeGI GKGCMC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 251
BauI CACGAG 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 161, 251
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 124, 152
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 128
Bme18I GGWCC 2 cut(s) 140, 260
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 140, 260
BmiI GGNNCC 3 cut(s) 49, 141, 142
Bpu1102I GCTNAGC 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 3 cut(s) 110, 166, 263
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 3 cut(s) 110, 166, 263
BseRI GAGGAG 3 cut(s) 57, 82, 85
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 161, 251
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 161, 251
Bsp1720I GCTNAGC 1 cut(s) 245
Bsp19I CCATGG 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 3 cut(s) 49, 141, 142
BspMAI CTGCAG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 3 cut(s) 110, 166, 263
BssECI CCNNGG 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 236
BssSI CACGAG 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 140, 260
CviAII CATG 3 cut(s) 7, 37, 52
CviJI RGCY 4 cut(s) 21, 27, 35, 249
CviKI_1 RGCY 4 cut(s) 21, 27, 35, 249
DdeI CTNAG 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 140, 260
Eco53kI GAGCTC 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 10, 40, 55
FaiI YATR 5 cut(s) 8, 24, 38, 53, 169
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 6, 36, 51
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 3 cut(s) 10, 40, 55
HinfI GANTC 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 71, 234
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 66, 236
HpyCH4V TGCA 2 cut(s) 159, 201
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 66, 236
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 3 cut(s) 10, 40, 55
KflI GGGWCCC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 4 cut(s) 123, 147, 171, 211
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 1 cut(s) 120
MaeII ACGT 2 cut(s) 66, 236
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 5 cut(s) 69, 72, 75, 78, 98
MhlI GDGCHC 2 cut(s) 161, 251
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 6 cut(s) 35, 38, 100, 103, 106, 163
MslI CAYNNNNRTG 1 cut(s) 154
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 3 cut(s) 10, 40, 55
NlaIV GGNNCC 3 cut(s) 49, 141, 142
NmuCI GTSAC 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 154
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PpuMI RGGWCCY 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 49, 141, 142
PspPI GGNCC 2 cut(s) 140, 260
PspPPI RGGWCCY 1 cut(s) 140
PstI CTGCAG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 154
SacI GAGCTC 1 cut(s) 251
SatI GCNGC 1 cut(s) 127
Sau96I GGNCC 2 cut(s) 140, 260
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 2 cut(s) 161, 251
SetI ASST 4 cut(s) 69, 200, 239, 251
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 2 cut(s) 140, 260
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 120
SstI GAGCTC 1 cut(s) 251
StyI CCWWGG 1 cut(s) 36
TaiI ACGT 2 cut(s) 69, 239
TasI AATT 1 cut(s) 29
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 241, 258
TspRI CASTG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 140, 260
XspI CTAG 1 cut(s) 120
ZraI GACGTC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.