RLG00000028671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013711
Physical Location & Seq
Forward (+)
25938056 .. 25939415
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028671

Sequence Viewer

Length: 813 bp
ATGGGAGGAGGAACCATGCATATTGATTTTCCTATCATCCACTTCAAACCCTCTTCTTCTAATACTACTGATAATAAAATTATCAGTAATAATCTTAATTTTCCAGTTTCAAACAGTTATGTTGGAGCTGTTAAACCCTCTTGTTCTGCTTCACAGTGCTACTGTGGGAATGAAACTTGCAGGAAGAAATTAGAGCTTGTTTATGGAAAAGAAGAGAAAAGAGCAAGTGGGCCTTTGATTAGCAGCTCTGTTTTTGGGTCCGTTCCTTCCCAATTTGAAGTCCAAAGTGCAATTGCTGCACTTCTGAATTTTATGCTTGGGGTAAATTCATCTGAGTCAGACTTACAGTGGCTTCAGAAATTGTTGGATTCTTGTGTTACAAGAAAGCTACTGTCCTATGGACACAGAAAAGTTTATGATGCTTTCCAGATGCTGCAAGCAGATCCTTCTGTTCAGAGATTGGTGCTTTCCCTATCCTCTGATAAAGCCCTATGGGATGCTATTACCAACAACGATTTGGTCAAGAAGCTCCAAGAGCCACCCGGTTCAGGCGTGCCTCAAAATTCAAACACAGAACCGGACTTGGTTGCCTGCATTATCGGGTGGATTATGGAGATGACAAAAGCGAAAGTTATGGAACTCGTTGAGAAATTCCAATCACTGGTGAATGACGTATTTCTACCTCGACAGACTAGGGGGGAAAATCCAGAAGTCGAGAACAAGAACGAGTTTGAAGAAAAGCTTAGATCTTCACTGCTTCTCTCAATTGTGACCATCTTGATTGTGGTTGTCGCTCGACTCCAAAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

29.87

Weight (kDa)

6.83

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 661
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 4 cut(s) 307, 325, 562, 650
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 548, 661
AgsI TTSAA 5 cut(s) 46, 111, 278, 567, 734
AluBI AGCT 6 cut(s) 128, 196, 246, 388, 529, 742
AluI AGCT 6 cut(s) 128, 196, 246, 388, 529, 742
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 3 cut(s) 243, 296, 433
ApoI RAATTY 4 cut(s) 307, 325, 562, 650
AspS9I GGNCC 2 cut(s) 230, 258
AsuC2I CCSGG 1 cut(s) 543
AsuHPI GGTGA 1 cut(s) 676
AvaII GGWCC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 255, 283, 420
BccI CCATC 1 cut(s) 782
BcnI CCSGG 1 cut(s) 543
BfaI CTAG 1 cut(s) 693
BglII AGATCT 1 cut(s) 746
BisI GCNGC 3 cut(s) 244, 297, 434
BlsI GCNGC 3 cut(s) 245, 298, 435
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 230, 258
BmiI GGNNCC 2 cut(s) 13, 259
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 3 cut(s) 409, 420, 487
BpuMI CCSGG 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 577
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 661
Bse1I ACTGG 2 cut(s) 104, 666
BseGI GGATG 2 cut(s) 36, 502
BseLI CCNNNNNNNGG 2 cut(s) 548, 661
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 104, 666
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 3 cut(s) 255, 283, 420
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 232
BsiSI CCGG 2 cut(s) 543, 578
BslI CCNNNNNNNGG 2 cut(s) 548, 661
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 442, 746
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 13, 259
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 2 cut(s) 104, 666
BssMI GATC 2 cut(s) 442, 746
Bst4CI ACNGT 5 cut(s) 116, 156, 164, 348, 393
Bst6I CTCTTC 2 cut(s) 58, 207
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 438, 554, 592
BstDEI CTNAG 2 cut(s) 333, 743
BstF5I GGATG 2 cut(s) 36, 502
BstKTI GATC 2 cut(s) 445, 749
BstMBI GATC 2 cut(s) 442, 746
BstMWI GCNNNNNNNGC 2 cut(s) 296, 535
BstSCI CCNGG 1 cut(s) 541
BstV1I GCAGC 3 cut(s) 255, 283, 420
BstX2I RGATCY 2 cut(s) 442, 746
BstYI RGATCY 2 cut(s) 442, 746
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 2 cut(s) 36, 502
BtsI GCAGTG 1 cut(s) 752
BtsIMutI CAGTG 4 cut(s) 161, 353, 659, 752
Cac8I GCNNGC 3 cut(s) 438, 554, 592
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 230, 258
CviAII CATG 2 cut(s) 16, 810
DdeI CTNAG 2 cut(s) 333, 743
DpnI GATC 2 cut(s) 444, 748
DpnII GATC 2 cut(s) 442, 746
Eam1104I CTCTTC 2 cut(s) 58, 207
EarI CTCTTC 2 cut(s) 58, 207
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 21
FaeI CATG 2 cut(s) 19, 813
FalI AAGNNNNNCTT 4 cut(s) 217, 249, 726, 758
FatI CATG 2 cut(s) 15, 809
Fnu4HI GCNGC 3 cut(s) 244, 297, 434
FokI GGATG 2 cut(s) 23, 509
Fsp4HI GCNGC 3 cut(s) 244, 297, 434
FspBI CTAG 1 cut(s) 693
GluI GCNGC 3 cut(s) 244, 297, 434
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 543, 578
Hin1II CATG 2 cut(s) 19, 813
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 3 cut(s) 335, 368, 798
HpaII CCGG 2 cut(s) 543, 578
HphI GGTGA 1 cut(s) 676
Hpy188I TCNGA 6 cut(s) 306, 334, 340, 357, 456, 481
Hpy188III TCNNGA 5 cut(s) 427, 523, 707, 715, 778
HpyAV CCTTC 2 cut(s) 276, 456
HpyCH4III ACNGT 5 cut(s) 116, 156, 164, 348, 393
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 6 cut(s) 19, 180, 290, 299, 436, 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 535
HpyF3I CTNAG 2 cut(s) 333, 743
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 2 cut(s) 19, 813
Kzo9I GATC 2 cut(s) 442, 746
LmnI GCTCC 2 cut(s) 125, 534
LpnPI CCDG 9 cut(s) 117, 166, 440, 534, 556, 591, 604, 647, 720
Lsp1109I GCAGC 3 cut(s) 255, 283, 420
LweI GCATC 3 cut(s) 409, 420, 487
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 672
MaeIII GTNAC 2 cut(s) 376, 769
MalI GATC 2 cut(s) 444, 748
MboI GATC 2 cut(s) 442, 746
MboII GAAGA 6 cut(s) 45, 48, 196, 224, 741, 746
MfeI CAATTG 2 cut(s) 291, 765
MflI RGATCY 2 cut(s) 442, 746
MlyI GAGTC 2 cut(s) 344, 792
MmeI TCCRAC 2 cut(s) 103, 345
MnlI CCTC 5 cut(s) 61, 148, 487, 567, 693
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 2 cut(s) 96, 132
MspI CCGG 2 cut(s) 543, 578
MspR9I CCNGG 1 cut(s) 543
MunI CAATTG 2 cut(s) 291, 765
MwoI GCNNNNNNNGC 2 cut(s) 296, 535
NciI CCSGG 1 cut(s) 543
NdeII GATC 2 cut(s) 442, 746
NlaIII CATG 2 cut(s) 19, 813
NlaIV GGNNCC 2 cut(s) 13, 259
NmuCI GTSAC 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 21
PfeI GAWTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 661
PkrI GCNGC 3 cut(s) 245, 298, 435
PleI GAGTC 2 cut(s) 343, 792
PpsI GAGTC 2 cut(s) 343, 792
PspN4I GGNNCC 2 cut(s) 13, 259
PspPI GGNCC 2 cut(s) 230, 258
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 2 cut(s) 442, 746
SaqAI TTAA 2 cut(s) 96, 132
SatI GCNGC 3 cut(s) 244, 297, 434
Sau3AI GATC 2 cut(s) 442, 746
Sau96I GGNCC 2 cut(s) 230, 258
SchI GAGTC 2 cut(s) 344, 792
ScrFI CCNGG 1 cut(s) 543
SetI ASST 8 cut(s) 130, 198, 248, 390, 531, 675, 685, 744
SfaNI GCATC 3 cut(s) 409, 420, 487
SinI GGWCC 1 cut(s) 258
SspMI CTAG 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 541
TaaI ACNGT 5 cut(s) 116, 156, 164, 348, 393
TaiI ACGT 1 cut(s) 675
TaqI TCGA 3 cut(s) 685, 714, 796
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 96, 132
Tru9I TTAA 2 cut(s) 96, 132
TscAI CASTG 4 cut(s) 161, 353, 666, 759
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 3 cut(s) 243, 296, 433
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 186, 318
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 4 cut(s) 161, 353, 666, 759
Van91I CCANNNNNTGG 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 4 cut(s) 307, 325, 562, 650
XcmI CCANNNNNNNNNTGG 2 cut(s) 514, 781
XspI CTAG 1 cut(s) 693
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.