Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013711

Physical Location & Seq

Genomic Coordinates Reverse (-)

19221211 .. 19223484

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGAGGAGGAACCATGCATATTGACCTGCCCACCATCCACATCAAACATTCTTCTTCTTCTTCTTCTTCTTCTTCGAAGCTTCCAGTTTCATCCAGTTATGTTGCCACTGTTAAACCCTCTTGTTCTGCTACATACTGTTTCTGTGGAAGTGAGAGTTGCAGAAAACTAGAGCTTGCATATGGAAAAGAAGACAAAAGAGCAAGTGGGTCTAATCTGAGCTCTGTTTTTGGGCCTGTTCCTTCCCAATTTGAAGTCCAAAATGCAATAACTGCTCTTCTCAATTTTATGCAAGGGATAACTTCATCTCAGCCAGAGTTTCAATGGCTTCAGCAAATATTGGATTGCTGTGTTACAAGAAAGTTGCTCTCATATGGACAAAGAAGAGTTCATGAGGCTTTCCAATTGTTACAGACGGATCCTTGTGTTAAGAGACTGGTGGTCTCCCTTTCATCTGATAAAGCCCTATGGGAAGCTGTTACCAACAATGAGTTGGTCAAGAAGCTCCAAGAGCCTATCTTCCTTGGGCTGCCTTCGAGTGAAAACGAGGAACCAGAATTATCTACACGAATTATGAGGTGGATTATGGATGTTACAAAAGCAAAAATTATGCAACTTATTGAGACATTTCAATCACTCGTGAATGAGATGTTTCTACCTCCAGAAACTCCTCCGAGTGAAAACCCTACGGCGGACGATGAGGATCAGTTTGAAGCAAAAGTTAGGTCTTCATTGCTTCTCTCTGTTGTGATTCTTTTAATTGTGGTTGTTACTCGATTCCACAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.2

Weight (kDa)

5.99

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013711)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10480 FvH4_7g10480
malus_domestica	MD07G1110800.v1.1
prunus_persica	Prupe.2G134300_v2.0.a1
pyrus_communis	pycom07g09570
rosa_chinensis	RchiOBHm_Chr1g0348271
rosa_laevigata	RLG00000028671
rosa_multiflora	Rmu_sc0003661.1_g000002 Rmu_sc0007293.1_g000002 Rmu_sc0042680.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307060
rosa_rugosa	Rorug01G0194100 Rorug01G0194100
rosa_samantha	Rh1AG211100 Rh1BG177600 Rh1CG195500 Rh1DG207100
rosa_wichuraiana	Rw1G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	3 cut(s)	413, 426, 711
AcuI	CTGAAG	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	691
AgsI	TTSAA	4 cut(s)	254, 323, 632, 713
AhdI	GACNNNNNGTC	1 cut(s)	440
AluBI	AGCT	5 cut(s)	82, 175, 222, 476, 505
AluI	AGCT	5 cut(s)	82, 175, 222, 476, 505
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	3 cut(s)	427, 448, 617
AlwI	GGATC	3 cut(s)	413, 426, 711
AoxI	GGCC	2 cut(s)	233, 786
ApeKI	GCWGC	1 cut(s)	529
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
AspS9I	GGNCC	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	638
BbsI	GAAGAC	2 cut(s)	198, 720
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	1 cut(s)	705
BcoDI	GTCTC	3 cut(s)	427, 448, 617
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	530
BlsI	GCNGC	1 cut(s)	531
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	13, 420, 552
BpiI	GAAGAC	2 cut(s)	198, 720
BpmI	CTGGAG	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	3 cut(s)	86, 96, 441
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	3 cut(s)	36, 92, 595
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	209, 323
BseNI	ACTGG	3 cut(s)	86, 96, 441
BseRI	GAGGAG	2 cut(s)	21, 660
BseXI	GCAGC	1 cut(s)	516
BshFI	GGCC	2 cut(s)	235, 788
BsiHKAI	GWGCWC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	3 cut(s)	427, 448, 617
BsnI	GGCC	2 cut(s)	235, 788
Bso31I	GGTCTC	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	418, 703
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	2 cut(s)	235, 788
BspCNI	CTCAG	2 cut(s)	210, 322
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	13, 420, 552
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	413, 426, 711
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	86, 96, 441
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	2 cut(s)	418, 703
BssSI	CACGAG	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	638
Bst4CI	ACNGT	2 cut(s)	112, 140
Bst6I	CTCTTC	2 cut(s)	282, 379
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	218, 309
BstF5I	GGATG	3 cut(s)	36, 92, 595
BstKTI	GATC	2 cut(s)	421, 706
BstMAI	GTCTC	3 cut(s)	427, 448, 617
BstMBI	GATC	2 cut(s)	418, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 511
BstV1I	GCAGC	1 cut(s)	516
BstV2I	GAAGAC	2 cut(s)	198, 720
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	235, 788
BtsCI	GGATG	3 cut(s)	36, 92, 595
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	2 cut(s)	16, 392
DdeI	CTNAG	2 cut(s)	218, 309
DpnI	GATC	2 cut(s)	420, 705
DpnII	GATC	2 cut(s)	418, 703
DriI	GACNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	2 cut(s)	282, 379
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EarI	CTCTTC	2 cut(s)	282, 379
EciI	GGCGGA	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	523
Eco147I	AGGCCT	1 cut(s)	788
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	2 cut(s)	19, 395
FatI	CATG	2 cut(s)	15, 391
FauNDI	CATATG	2 cut(s)	181, 373
Fnu4HI	GCNGC	1 cut(s)	530
FokI	GGATG	3 cut(s)	23, 79, 602
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	530
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	530
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	235, 788
Hin1II	CATG	2 cut(s)	19, 395
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	751, 777
Hpy188I	TCNGA	3 cut(s)	219, 457, 675
Hpy188III	TCNNGA	4 cut(s)	392, 499, 640, 662
HpyAV	CCTTC	2 cut(s)	252, 543
HpyCH4III	ACNGT	2 cut(s)	112, 140
HpyCH4V	TGCA	6 cut(s)	19, 162, 179, 266, 292, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 511
HpyF3I	CTNAG	2 cut(s)	218, 309
Hsp92II	CATG	2 cut(s)	19, 395
Kzo9I	GATC	2 cut(s)	418, 703
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	510
LpnPI	CCDG	8 cut(s)	41, 99, 109, 249, 327, 422, 567, 675
Lsp1109I	GCAGC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	5 cut(s)	352, 408, 478, 592, 769
MalI	GATC	2 cut(s)	420, 705
MboI	GATC	2 cut(s)	418, 703
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	7 cut(s)	248, 283, 404, 557, 570, 606, 759
MnlI	CCTC	7 cut(s)	130, 388, 541, 570, 669, 681, 694
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	3 cut(s)	114, 429, 758
MunI	CAATTG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	272, 511
NdeI	CATATG	2 cut(s)	181, 373
NdeII	GATC	2 cut(s)	418, 703
NlaIII	CATG	2 cut(s)	19, 395
NlaIV	GGNNCC	3 cut(s)	13, 420, 552
NsiI	ATGCAT	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	788
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	751, 777
PkrI	GCNGC	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	13, 420, 552
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	114, 429, 758
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	2 cut(s)	418, 703
Sau96I	GGNCC	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	9 cut(s)	30, 84, 177, 224, 478, 507, 581, 661, 728
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	7 cut(s)	248, 283, 404, 557, 570, 606, 759
SseBI	AGGCCT	1 cut(s)	788
SsiI	CCGC	1 cut(s)	692
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	788
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	112, 140
TaqI	TCGA	3 cut(s)	77, 536, 775
TasI	AATT	7 cut(s)	248, 283, 404, 557, 570, 606, 759
TfiI	GAWTC	2 cut(s)	751, 777
Tru1I	TTAA	3 cut(s)	114, 429, 758
Tru9I	TTAA	3 cut(s)	114, 429, 758
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	529
TspDTI	ATGAA	5 cut(s)	81, 294, 380, 441, 720
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	2 cut(s)	321, 490
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.