FvH4_7g11840

Transducin beta-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10827453 .. 10833379
5927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11840.t1

Sequence Viewer

Length: 1308 bp
ATGGATCCGGTTCTTCCACTCGCGGCCCTCTCCGTCCTCATCGGCGCCGTCATTGCCCTCGCCTTCTTTGGCAGCTACTTCCGCAAGCGGAGCTCCGAAGTCCAGTCCATTTCCCAACCGGAGCTCCTCTCCGATCAGAAGAAGCAACCGGCCAAGCCCTCCCAGCATAAGAAGTCTCACGCCAAGCCTCACTCCCACGCCTCCGATAAGGATCACAACAAGAAGCATCATCCGTTGGATGTGAATACATTGAAAGGTCATGCCGATTCGGTTGATGGACTGTGTTTTTCTCCTGATGGAAGGAGTTTGGCTACAGCTTGTGCGGATGGAATTATCAGGGTATTCAAGTTGGACGATGCTTCGAGTAAAAGTTTCAAATTTCTGAAAATAAGTACGCCTGTTGGTGGTCCTCCTGTGGCAGTTTCCTTTTCTGACGATGCATCCTCCTTAGTCGTCGCTTCCCAAAATCTGACTGGCGCTTCTTTGTACATGTACGGTGGGGTAGAAAAACCCAAAGTTTCTAATGAATCCGGTCAGCCAGCCAAGGTTCCTCTCCCAGAAATCAAGTGGGAACAGCACAAGATTCATGAAAAATTAGGTATTCTCACCTTATTTGGGACCAAAGCAAGTTATGGCACTGCTGATGGGAGTGCAATTATTGCTTCTTGTTCTGAAGGTACTGACATCATAATTTGGCATGGTAAAACTGGCAAGAACTTGGGGCATGTTGACACAAATCAGTTGAAAAACAACATGGCTGCTATATCACCAAATGGACGGTTCATTGCTGCAGCAGCTTTTACTGCTGATGTGAAGGTGTGGGAGATTGTATATTCAAAGGATGGATCAGTCAAGGAGGTTACAAAAGCCATGCAACTTAAAGGACATAAGAGTGCAGTAACTTGGTTATGCTTTACTCCAGACTCCGAACAAATCATCACAGCATCAAAAGATGGTTCAATAAGAATTTGGAATATCAATGTTCGATATCATATGGATGAGGATCCAAAAACTCTCAAGGTGTTTCCTATTCCACTTAGTGGCGGTAGTCCCCACTATGATCGGCTTAGTTTATCTCCTGATGGAAAAATCTTGGCGGCAACCCATGGCTCAACATTGCAGTGGTTATGTGTTGAAACTGGAAAGGTATTGGAGACAGCTGACAAAGCTCATGACGATTTTATCACATGCATTGCATGGGGACCACAGGCTATTCCAATGGGTGATAAGAAACTATTTATTTTGGCAACAGCAAGTGTAGATAAAAAGGTTAAACTTTGGGTTGCTCCATCCCTCGATGCATCATAA

Protein Analysis

436

Amino Acids

46.85

Weight (kDa)

8.78

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 79 - 158 1.4e-07 THOC3 beta-propeller domain
WD40 PF00400 81 - 115 4.3e-08 WD domain, G-beta repeat
WD40_Prp19 PF24814 81 - 157 2.6e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 82 - 155 9.9e-06 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 182 - 327 7e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2 PF23414 213 - 332 3.8e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 215 - 327 2.2e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 218 - 327 1.2e-13 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 219 - 328 8.7e-08 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 224 - 326 2.1e-13 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 227 - 324 2.6e-07 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 253 - 328 4.5e-11 THOC3 beta-propeller domain
WDR55 PF24796 254 - 328 3.5e-06 WDR55
WD40_WDHD1_1st PF24817 284 - 427 7e-13 WDHD1 first WD40 domain
WD40 PF00400 291 - 325 1.7e-09 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 292 - 371 6.6e-07 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 1040
AccII CGCG 1 cut(s) 23
AciI CCGC 6 cut(s) 23, 82, 88, 323, 1044, 1097
AclWI GGATC 5 cut(s) 12, 219, 853, 998, 1011
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 377, 966
AcuI CTGAAG 1 cut(s) 693
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 1040
AfaI GTAC 4 cut(s) 394, 488, 494, 679
AfiI CCNNNNNNNGG 3 cut(s) 404, 615, 1040
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 7 cut(s) 253, 346, 376, 745, 837, 960, 1136
AluBI AGCT 7 cut(s) 75, 93, 124, 317, 797, 1160, 1169
AluI AGCT 7 cut(s) 75, 93, 124, 317, 797, 1160, 1169
Alw21I GWGCWC 2 cut(s) 95, 126
Alw26I GTCTC 2 cut(s) 180, 1148
AlwI GGATC 5 cut(s) 12, 219, 853, 998, 1011
AoxI GGCC 2 cut(s) 24, 150
ApeKI GCWGC 5 cut(s) 72, 758, 788, 791, 794
ApoI RAATTY 2 cut(s) 377, 966
AspLEI GCGC 2 cut(s) 47, 479
AspS9I GGNCC 4 cut(s) 25, 407, 618, 1202
AsuHPI GGTGA 3 cut(s) 598, 759, 1235
AvaII GGWCC 3 cut(s) 407, 618, 1202
BamHI GGATCC 2 cut(s) 4, 1003
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 95, 126
Bbv12I GWGCWC 2 cut(s) 95, 126
BbvI GCAGC 5 cut(s) 84, 745, 775, 803, 806
BccI CCATC 8 cut(s) 269, 290, 320, 638, 836, 947, 1076, 1297
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 180, 1148
BfmI CTRYAG 2 cut(s) 312, 789
BfoI RGCGCY 2 cut(s) 48, 480
BisI GCNGC 7 cut(s) 24, 73, 759, 789, 792, 795, 1098
BlsI GCNGC 7 cut(s) 25, 74, 760, 790, 793, 796, 1099
Bme18I GGWCC 3 cut(s) 407, 618, 1202
BmgT120I GGNCC 4 cut(s) 25, 407, 618, 1202
BmiI GGNNCC 6 cut(s) 6, 46, 549, 619, 1005, 1203
BmsI GCATC 6 cut(s) 235, 346, 427, 449, 953, 1288
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 1001
BsaBI GATNNNNATC 2 cut(s) 210, 1002
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 543, 1105
BsaWI WCCGGW 3 cut(s) 7, 118, 530
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 615, 1040
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 4 cut(s) 103, 478, 712, 1144
Bse3DI GCAATG 4 cut(s) 51, 783, 1115, 1191
Bse8I GATNNNNATC 2 cut(s) 210, 1002
BseDI CCNNGG 2 cut(s) 543, 1105
BseGI GGATG 7 cut(s) 229, 244, 331, 440, 847, 1003, 1289
BseJI GATNNNNATC 2 cut(s) 210, 1002
BseLI CCNNNNNNNGG 3 cut(s) 404, 615, 1040
BseMI GCAATG 4 cut(s) 51, 783, 1115, 1191
BseNI ACTGG 4 cut(s) 103, 478, 712, 1144
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 5 cut(s) 84, 745, 775, 803, 806
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 26, 152
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 95, 126
BsiSI CCGG 4 cut(s) 8, 119, 149, 531
BslFI GGGAC 3 cut(s) 631, 1035, 1215
BslI CCNNNNNNNGG 3 cut(s) 404, 615, 1040
BsmAI GTCTC 2 cut(s) 180, 1148
BsmFI GGGAC 3 cut(s) 631, 1035, 1215
BsnI GGCC 2 cut(s) 26, 152
Bsp1286I GDGCHC 2 cut(s) 95, 126
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 6 cut(s) 23, 82, 88, 323, 1044, 1097
BspANI GGCC 2 cut(s) 26, 152
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 2 cut(s) 586, 1171
BspLI GGNNCC 6 cut(s) 6, 46, 549, 619, 1005, 1203
BspMAI CTGCAG 1 cut(s) 793
BspPI GGATC 5 cut(s) 12, 219, 853, 998, 1011
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 4 cut(s) 51, 783, 1115, 1191
BsrFI RCCGGY 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 4 cut(s) 103, 478, 712, 1144
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 543, 1105
BssMI GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 543, 1105
Bst4CI ACNGT 3 cut(s) 282, 497, 780
BstACI GRCGYC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 86, 540
BstDEI CTNAG 3 cut(s) 448, 1037, 1067
BstDSI CCRYGG 1 cut(s) 1105
BstF5I GGATG 7 cut(s) 229, 244, 331, 440, 847, 1003, 1289
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 2 cut(s) 48, 480
BstHHI GCGC 2 cut(s) 47, 479
BstKTI GATC 6 cut(s) 7, 136, 214, 848, 1006, 1063
BstMAI GTCTC 2 cut(s) 180, 1148
BstMBI GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
BstMWI GCNNNNNNNGC 8 cut(s) 53, 81, 90, 163, 659, 794, 803, 1166
BstNSI RCATGY 3 cut(s) 493, 728, 1191
BstSFI CTRYAG 2 cut(s) 312, 789
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 5 cut(s) 84, 745, 775, 803, 806
BstX2I RGATCY 2 cut(s) 4, 1003
BstYI RGATCY 2 cut(s) 4, 1003
BsuRI GGCC 2 cut(s) 26, 152
BtgI CCRYGG 1 cut(s) 1105
BtsCI GGATG 7 cut(s) 229, 244, 331, 440, 847, 1003, 1289
BtsI GCAGTG 2 cut(s) 636, 1127
BtsIMutI CAGTG 2 cut(s) 636, 1127
Cac8I GCNNGC 2 cut(s) 86, 540
CciI TCATGA 2 cut(s) 586, 1171
CfoI GCGC 2 cut(s) 47, 479
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 4 cut(s) 25, 407, 618, 1202
Csp6I GTAC 4 cut(s) 393, 487, 493, 678
CviQI GTAC 4 cut(s) 393, 487, 493, 678
DdeI CTNAG 3 cut(s) 448, 1037, 1067
DinI GGCGCC 1 cut(s) 46
DpnI GATC 6 cut(s) 6, 135, 213, 847, 1005, 1062
DpnII GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
DraIII CACNNNGTG 1 cut(s) 1040
EaeI YGGCCR 1 cut(s) 150
Ecl136II GAGCTC 2 cut(s) 93, 124
Eco130I CCWWGG 2 cut(s) 543, 1105
Eco24I GRGCYC 2 cut(s) 95, 126
Eco32I GATATC 1 cut(s) 989
Eco47I GGWCC 3 cut(s) 407, 618, 1202
Eco53kI GAGCTC 2 cut(s) 93, 124
Eco57I CTGAAG 1 cut(s) 693
EcoICRI GAGCTC 2 cut(s) 93, 124
EcoRV GATATC 1 cut(s) 989
EcoT14I CCWWGG 2 cut(s) 543, 1105
EcoT22I ATGCAT 3 cut(s) 442, 1193, 1303
EcoT38I GRGCYC 2 cut(s) 95, 126
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 543, 1105
FaqI GGGAC 3 cut(s) 631, 1035, 1215
FauNDI CATATG 1 cut(s) 993
Fnu4HI GCNGC 7 cut(s) 24, 73, 759, 789, 792, 795, 1098
FokI GGATG 7 cut(s) 216, 251, 338, 427, 854, 1010, 1276
FriOI GRGCYC 2 cut(s) 95, 126
Fsp4HI GCNGC 7 cut(s) 24, 73, 759, 789, 792, 795, 1098
GlaI GCGC 2 cut(s) 46, 478
GluI GCNGC 7 cut(s) 24, 73, 759, 789, 792, 795, 1098
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 2 cut(s) 48, 480
HaeIII GGCC 2 cut(s) 26, 152
HapII CCGG 4 cut(s) 8, 119, 149, 531
HhaI GCGC 2 cut(s) 47, 479
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 2 cut(s) 45, 477
HinP1I GCGC 2 cut(s) 45, 477
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 4 cut(s) 266, 527, 583, 923
HpaII CCGG 4 cut(s) 8, 119, 149, 531
HphI GGTGA 3 cut(s) 598, 759, 1235
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 9 cut(s) 97, 133, 138, 205, 384, 433, 471, 673, 928
Hpy188III TCNNGA 5 cut(s) 293, 587, 920, 1079, 1172
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 4 cut(s) 73, 294, 668, 808
HpyCH4III ACNGT 3 cut(s) 282, 497, 780
HpyCH4V TGCA 9 cut(s) 440, 653, 791, 874, 896, 1120, 1191, 1196, 1301
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 81, 90, 163, 659, 794, 803, 1166
HpyF3I CTNAG 3 cut(s) 448, 1037, 1067
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 2 cut(s) 45, 477
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
LmnI GCTCC 5 cut(s) 90, 98, 121, 129, 1291
Lsp1109I GCAGC 5 cut(s) 84, 745, 775, 803, 806
LweI GCATC 6 cut(s) 235, 346, 427, 449, 953, 1288
MaeIII GTNAC 2 cut(s) 859, 898
MalI GATC 6 cut(s) 6, 135, 213, 847, 1005, 1062
MboI GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
MboII GAAGA 2 cut(s) 5, 151
MflI RGATCY 2 cut(s) 4, 1003
MhlI GDGCHC 2 cut(s) 95, 126
MluCI AATT 6 cut(s) 330, 377, 593, 654, 690, 966
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 917
MmeI TCCRAC 2 cut(s) 216, 330
Mph1103I ATGCAT 3 cut(s) 442, 1193, 1303
MseI TTAA 2 cut(s) 879, 1272
MslI CAYNNNNRTG 3 cut(s) 891, 996, 1120
MspA1I CMGCKG 1 cut(s) 1160
MspI CCGG 4 cut(s) 8, 119, 149, 531
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 8 cut(s) 53, 81, 90, 163, 659, 794, 803, 1166
NarI GGCGCC 1 cut(s) 45
NcoI CCATGG 1 cut(s) 1105
NdeI CATATG 1 cut(s) 993
NdeII GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
NlaIV GGNNCC 6 cut(s) 6, 46, 549, 619, 1005, 1203
NsiI ATGCAT 3 cut(s) 442, 1193, 1303
NspI RCATGY 3 cut(s) 493, 728, 1191
PagI TCATGA 2 cut(s) 586, 1171
PciI ACATGT 1 cut(s) 489
PfeI GAWTC 3 cut(s) 266, 527, 583
PflMI CCANNNNNTGG 1 cut(s) 1040
PkrI GCNGC 7 cut(s) 25, 74, 760, 790, 793, 796, 1099
PleI GAGTC 1 cut(s) 917
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 917
PscI ACATGT 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 95, 126
PspFI CCCAGC 1 cut(s) 162
PspN4I GGNNCC 6 cut(s) 6, 46, 549, 619, 1005, 1203
PspPI GGNCC 4 cut(s) 25, 407, 618, 1202
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 2 cut(s) 4, 1003
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 4 cut(s) 394, 488, 494, 679
RsaNI GTAC 4 cut(s) 393, 487, 493, 678
RseI CAYNNNNRTG 3 cut(s) 891, 996, 1120
SacI GAGCTC 2 cut(s) 95, 126
SaqAI TTAA 2 cut(s) 879, 1272
SatI GCNGC 7 cut(s) 24, 73, 759, 789, 792, 795, 1098
Sau3AI GATC 6 cut(s) 4, 133, 211, 845, 1003, 1060
Sau96I GGNCC 4 cut(s) 25, 407, 618, 1202
SchI GAGTC 1 cut(s) 917
SduI GDGCHC 2 cut(s) 95, 126
SfaNI GCATC 6 cut(s) 235, 346, 427, 449, 953, 1288
SfcI CTRYAG 2 cut(s) 312, 789
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 3 cut(s) 407, 618, 1202
SmiMI CAYNNNNRTG 3 cut(s) 891, 996, 1120
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
Sse9I AATT 6 cut(s) 330, 377, 593, 654, 690, 966
SsiI CCGC 6 cut(s) 23, 82, 88, 323, 1044, 1097
SspDI GGCGCC 1 cut(s) 44
SstI GAGCTC 2 cut(s) 95, 126
StyI CCWWGG 2 cut(s) 543, 1105
TaaI ACNGT 3 cut(s) 282, 497, 780
TaqI TCGA 3 cut(s) 362, 985, 1296
TasI AATT 6 cut(s) 330, 377, 593, 654, 690, 966
TatI WGTACW 1 cut(s) 486
TauI GCSGC 2 cut(s) 26, 1100
TfiI GAWTC 3 cut(s) 266, 527, 583
Tru1I TTAA 2 cut(s) 879, 1272
Tru9I TTAA 2 cut(s) 879, 1272
TscAI CASTG 2 cut(s) 643, 1127
TseI GCWGC 5 cut(s) 72, 758, 788, 791, 794
TspDTI ATGAA 4 cut(s) 540, 575, 603, 772
TspGWI ACGGA 2 cut(s) 22, 222
TspRI CASTG 2 cut(s) 643, 1127
Van91I CCANNNNNTGG 1 cut(s) 1040
VpaK11BI GGWCC 3 cut(s) 407, 618, 1202
XapI RAATTY 2 cut(s) 377, 966
XceI RCATGY 3 cut(s) 493, 728, 1191
XcmI CCANNNNNNNNNTGG 2 cut(s) 470, 564
Zsp2I ATGCAT 3 cut(s) 442, 1193, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.