Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010340

Physical Location & Seq

Genomic Coordinates Reverse (-)

13935190 .. 13938593

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16680.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGCCAATATCATGTAATGGGGTCATTGATCGATCATCCTATCGTTACATATCAACCTATCAACACCTCCATCCTTTTTTCCATTTCCCCAGACGCATTTGCTCATCGTCACCGTATCCAAACCCCCAACTCCTCAATCCTCTCCGGTTACCGATGGATCCGCTTCTTCCCATTGCGGCGCTCTCGATTCTCATCGGCGCTGTCATCGCCCTTGCCTTCTTCGGAAGCTACTTCCGAAAACGGAGCTCCGAAATCCAGTCCCTTTCCAAGCCGGAACTCCAGTCGGACCAAAAAAAGCACCAATCAAAGCCTCACCAGACTAAGAAGTCTCACGCCAGACCACACTCTCACGCCTCTGACAAGGATCAAAACAAGAAACATCATCCGTTGGATGTGAATACTTTGAAAGGCCATGGAGATGCGGTCACTGACCTATGTTTCTCCTCGGACGGGCGGAGTTTGGCAACAGCTTGTACGGATGGAGTGCTTAGGGTATTCAAGTTGGATGACGCTTCGAGTAAAAGTTTCAAGTTTCTGAGAATTAGTTTGCCTCCCGGAGCTGGTCATCCTGTAGCAGTTTCATTTTCGGATGATGGATTGTCAATAGTCGTGGCTTCTCAAAGTCTGACCGGTTCTTCTTTGTATATGTATGGTGGGGCGGAAAAACCCAAACCTTCTGAGGAAGCTAGACAGCAACCCAAGCTTCCTCTGCCTGAGGTCAAGTGGGGCCATCACAAAGTTCACGATAAATTAGGTATTCTCACCCTATCTGGGACCACAGCAAGTTATGGCACTGCTGATGGGAGTACAATTGTTGCTTCATGTTCAGAAGGAACTGACATCAAACTTTGGCATGGTACAACCGGCAAGATTTTGGGGCATGTTGACACAAATCAGTTGAAAAACACCATGGCTGCTATATCACCAAATGGGCGTTTCCTTGCTGCAGCAGCGTTTACTGCAGATGTGAAGGTGTGGGAGATCGTCTATTCAAAGGATGGTTCAGTCAAGGAGGTCACAAAAGCCATGCAACTTAAAGGCCATAAGAGTGCAGTGACTTGGTTATGCTTTACTCCGAACTCAGAACAAATGATCACAGCGTCCAAAGATGGTTCGATAAGAATTTGGAATATCAATGGTATGTATGACTGGTATTCTGTTCTTTGTATATGTCATCTTTGTCATGTACAGCAGCTAATATTCAAAAACAGCCCCCTCCCTCCAAGCAAATACATACACATGCAACCATGTAATCTTAGTCTAACACGTGTCAACTGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030968 GO:0031369 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042149 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051219 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

428

Amino Acids

46.96

Weight (kDa)

9.27

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00090
fragaria_vesca	FvH4_7g11840 FvH4_7g11840 FvH4_7g11840 FvH4_7g11840
malus_domestica	MD02G1204700.v1.1 MD07G1121300.v1.1
prunus_persica	Prupe.2G145000_v2.0.a1
pyrus_communis	pycom02g16680 pycom07g10320
rosa_chinensis	RchiOBHm_Chr1g0350521
rosa_laevigata	RLG00000028479
rosa_multiflora	Rmu_sc0020900.1_g000001 Rmu_ssc0000083.1_g000024
rosa_roxburghii	Rroxscaffold_4G00304790
rosa_rugosa	Rorug01G0211700
rosa_samantha	Rh1AG226400 Rh1BG194800 Rh1CG211200 Rh1DG223000
rosa_wichuraiana	Rw1G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AciI	CCGC	5 cut(s)	161, 176, 422, 454, 659
AclWI	GGATC	3 cut(s)	152, 165, 372
AcsI	RAATTY	1 cut(s)	1122
AcvI	CACGTG	1 cut(s)	1268
AfaI	GTAC	4 cut(s)	475, 808, 859, 1188
AfiI	CCNNNNNNNGG	3 cut(s)	450, 560, 771
AflIII	ACRYGT	2 cut(s)	1265, 1267
AgeI	ACCGGT	1 cut(s)	629
AgsI	TTSAA	6 cut(s)	406, 499, 529, 901, 993, 1204
AluBI	AGCT	7 cut(s)	228, 246, 470, 560, 686, 703, 1195
AluI	AGCT	7 cut(s)	228, 246, 470, 560, 686, 703, 1195
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	152, 165, 372
AoxI	GGCC	3 cut(s)	409, 727, 1039
ApeKI	GCWGC	5 cut(s)	914, 944, 947, 950, 1192
ApoI	RAATTY	1 cut(s)	1122
AsiGI	ACCGGT	1 cut(s)	629
AspLEI	GCGC	2 cut(s)	181, 200
AspS9I	GGNCC	3 cut(s)	286, 727, 774
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	4 cut(s)	102, 305, 754, 915
AvaII	GGWCC	2 cut(s)	286, 774
AxyI	CCTNAGG	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	1268
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	5 cut(s)	901, 931, 959, 962, 1204
BccI	CCATC	8 cut(s)	78, 148, 473, 587, 738, 794, 992, 1103
BciVI	GTATCC	1 cut(s)	126
BclI	TGATCA	1 cut(s)	1092
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	3 cut(s)	570, 945, 960
BfoI	RGCGCY	2 cut(s)	182, 201
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	6 cut(s)	177, 915, 945, 948, 951, 1193
BlsI	GCNGC	6 cut(s)	178, 916, 946, 949, 952, 1194
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	2 cut(s)	286, 774
BmgT120I	GGNCC	3 cut(s)	286, 727, 774
BmiI	GGNNCC	3 cut(s)	159, 728, 775
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	1268
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	412, 444, 909
BsaWI	WCCGGW	2 cut(s)	144, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	450, 560, 771
Bse118I	RCCGGY	2 cut(s)	629, 863
Bse1I	ACTGG	3 cut(s)	256, 280, 1154
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	412, 444, 909
BseGI	GGATG	9 cut(s)	35, 70, 382, 397, 484, 511, 565, 595, 1003
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	3 cut(s)	450, 560, 771
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	4 cut(s)	527, 669, 705, 1095
BseNI	ACTGG	3 cut(s)	256, 280, 1154
BseRI	GAGGAG	2 cut(s)	122, 433
BseXI	GCAGC	5 cut(s)	901, 931, 959, 962, 1204
BsgI	GTGCAG	1 cut(s)	1071
BshFI	GGCC	3 cut(s)	411, 729, 1041
BshTI	ACCGGT	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	5 cut(s)	145, 272, 555, 630, 864
BslFI	GGGAC	2 cut(s)	244, 787
BslI	CCNNNNNNNGG	3 cut(s)	450, 560, 771
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	2 cut(s)	244, 787
BsnI	GGCC	3 cut(s)	411, 729, 1041
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	1186
Bsp143I	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
Bsp19I	CCATGG	2 cut(s)	412, 909
BspACI	CCGC	5 cut(s)	161, 176, 422, 454, 659
BspANI	GGCC	3 cut(s)	411, 729, 1041
BspCNI	CTCAG	4 cut(s)	528, 670, 706, 1094
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	159, 728, 775
BspMAI	CTGCAG	2 cut(s)	949, 964
BspPI	GGATC	3 cut(s)	152, 165, 372
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	2 cut(s)	629, 863
BsrGI	TGTACA	1 cut(s)	1186
BsrI	ACTGG	3 cut(s)	256, 280, 1154
BssAI	RCCGGY	2 cut(s)	629, 863
BssECI	CCNNGG	3 cut(s)	412, 444, 909
BssMI	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
BssT1I	CCWWGG	2 cut(s)	412, 909
Bst4CI	ACNGT	2 cut(s)	114, 1277
BstAUI	TGTACA	1 cut(s)	1186
BstBAI	YACGTR	1 cut(s)	1268
BstDEI	CTNAG	7 cut(s)	321, 488, 536, 678, 714, 1081, 1256
BstDSI	CCRYGG	2 cut(s)	412, 909
BstEII	GGTNACC	1 cut(s)	147
BstF5I	GGATG	9 cut(s)	35, 70, 382, 397, 484, 511, 565, 595, 1003
BstH2I	RGCGCY	2 cut(s)	182, 201
BstHHI	GCGC	2 cut(s)	181, 200
BstKTI	GATC	6 cut(s)	31, 35, 160, 367, 984, 1095
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 700, 709, 950, 959
BstNSI	RCATGY	2 cut(s)	884, 1243
BstPI	GGTNACC	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	3 cut(s)	570, 945, 960
BstV1I	GCAGC	5 cut(s)	901, 931, 959, 962, 1204
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	714
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	411, 729, 1041
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	2 cut(s)	412, 909
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	9 cut(s)	35, 70, 382, 397, 484, 511, 565, 595, 1003
BtsI	GCAGTG	2 cut(s)	792, 1059
BtsIMutI	CAGTG	3 cut(s)	426, 792, 1059
CfoI	GCGC	2 cut(s)	181, 200
Cfr10I	RCCGGY	2 cut(s)	629, 863
Cfr13I	GGNCC	3 cut(s)	286, 727, 774
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	3 cut(s)	102, 518, 1089
Csp6I	GTAC	4 cut(s)	474, 807, 858, 1187
CspAI	ACCGGT	1 cut(s)	629
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviQI	GTAC	4 cut(s)	474, 807, 858, 1187
DdeI	CTNAG	7 cut(s)	321, 488, 536, 678, 714, 1081, 1256
DpnI	GATC	6 cut(s)	30, 34, 159, 366, 983, 1094
DpnII	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EciI	GGCGGA	2 cut(s)	469, 674
Ecl136II	GAGCTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	412, 909
Eco24I	GRGCYC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	286, 774
Eco53kI	GAGCTC	1 cut(s)	246
Eco72I	CACGTG	1 cut(s)	1268
Eco81I	CCTNAGG	1 cut(s)	714
Eco91I	GGTNACC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	412, 909
EcoT38I	GRGCYC	1 cut(s)	248
ErhI	CCWWGG	2 cut(s)	412, 909
FaqI	GGGAC	2 cut(s)	244, 787
FbaI	TGATCA	1 cut(s)	1092
Fnu4HI	GCNGC	6 cut(s)	177, 915, 945, 948, 951, 1193
FokI	GGATG	9 cut(s)	22, 57, 369, 404, 491, 518, 552, 602, 1010
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	6 cut(s)	177, 915, 945, 948, 951, 1193
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	2 cut(s)	180, 199
GluI	GCNGC	6 cut(s)	177, 915, 945, 948, 951, 1193
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	2 cut(s)	182, 201
HaeIII	GGCC	3 cut(s)	411, 729, 1041
HapII	CCGG	5 cut(s)	145, 272, 555, 630, 864
HgaI	GACGC	3 cut(s)	102, 518, 1089
HhaI	GCGC	2 cut(s)	181, 200
Hin6I	GCGC	2 cut(s)	179, 198
HinP1I	GCGC	2 cut(s)	179, 198
HincII	GTYRAC	2 cut(s)	886, 1273
HindII	GTYRAC	2 cut(s)	886, 1273
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	5 cut(s)	145, 272, 555, 630, 864
HphI	GGTGA	4 cut(s)	102, 305, 754, 915
Hpy166II	GTNNAC	4 cut(s)	742, 886, 957, 1273
Hpy188III	TCNNGA	2 cut(s)	184, 743
Hpy8I	GTNNAC	4 cut(s)	742, 886, 957, 1273
HpyAV	CCTTC	4 cut(s)	226, 684, 824, 964
HpyCH4III	ACNGT	2 cut(s)	114, 1277
HpyCH4IV	ACGT	1 cut(s)	1267
HpyCH4V	TGCA	5 cut(s)	947, 962, 1030, 1052, 1243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 700, 709, 950, 959
HpyF3I	CTNAG	7 cut(s)	321, 488, 536, 678, 714, 1081, 1256
HpySE526I	ACGT	1 cut(s)	1267
HspAI	GCGC	2 cut(s)	179, 198
Ksp22I	TGATCA	1 cut(s)	1092
Kzo9I	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
LmnI	GCTCC	3 cut(s)	243, 251, 557
Lsp1109I	GCAGC	5 cut(s)	901, 931, 959, 962, 1204
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	1 cut(s)	1267
MaeIII	GTNAC	6 cut(s)	44, 108, 147, 424, 1015, 1054
MalI	GATC	6 cut(s)	30, 34, 159, 366, 983, 1094
MboI	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
MboII	GAAGA	3 cut(s)	158, 211, 627
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	4 cut(s)	540, 749, 810, 1122
MmeI	TCCRAC	3 cut(s)	264, 369, 483
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	3 cut(s)	417, 1047, 1238
MspI	CCGG	5 cut(s)	145, 272, 555, 630, 864
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	810
MwoI	GCNNNNNNNGC	5 cut(s)	206, 700, 709, 950, 959
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	2 cut(s)	412, 909
NdeII	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
NlaIV	GGNNCC	3 cut(s)	159, 728, 775
NmuCI	GTSAC	4 cut(s)	108, 424, 1015, 1054
NspI	RCATGY	2 cut(s)	884, 1243
PfeI	GAWTC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	553
PinAI	ACCGGT	1 cut(s)	629
PkrI	GCNGC	6 cut(s)	178, 916, 946, 949, 952, 1194
PmaCI	CACGTG	1 cut(s)	1268
PmlI	CACGTG	1 cut(s)	1268
Ppu21I	YACGTR	1 cut(s)	1268
Psp124BI	GAGCTC	1 cut(s)	248
PspCI	CACGTG	1 cut(s)	1268
PspEI	GGTNACC	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	159, 728, 775
PspPI	GGNCC	3 cut(s)	286, 727, 774
PstI	CTGCAG	2 cut(s)	949, 964
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	4 cut(s)	475, 808, 859, 1188
RsaNI	GTAC	4 cut(s)	474, 807, 858, 1187
RseI	CAYNNNNRTG	3 cut(s)	417, 1047, 1238
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	1035
SatI	GCNGC	6 cut(s)	177, 915, 945, 948, 951, 1193
Sau3AI	GATC	6 cut(s)	28, 32, 157, 364, 981, 1092
Sau96I	GGNCC	3 cut(s)	286, 727, 774
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	3 cut(s)	570, 945, 960
SinI	GGWCC	2 cut(s)	286, 774
SmiMI	CAYNNNNRTG	3 cut(s)	417, 1047, 1238
Sse9I	AATT	4 cut(s)	540, 749, 810, 1122
SsiI	CCGC	5 cut(s)	161, 176, 422, 454, 659
SspI	AATATT	1 cut(s)	1200
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	2 cut(s)	412, 909
TaaI	ACNGT	2 cut(s)	114, 1277
TaiI	ACGT	1 cut(s)	1270
TaqI	TCGA	4 cut(s)	31, 185, 515, 1115
TasI	AATT	4 cut(s)	540, 749, 810, 1122
TatI	WGTACW	2 cut(s)	806, 1186
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TscAI	CASTG	3 cut(s)	433, 799, 1059
TseFI	GTSAC	4 cut(s)	108, 424, 1015, 1054
TseI	GCWGC	5 cut(s)	914, 944, 947, 950, 1192
Tsp45I	GTSAC	4 cut(s)	108, 424, 1015, 1054
TspDTI	ATGAA	2 cut(s)	570, 810
TspGWI	ACGGA	3 cut(s)	256, 375, 491
TspRI	CASTG	3 cut(s)	433, 799, 1059
VpaK11BI	GGWCC	2 cut(s)	286, 774
XapI	RAATTY	1 cut(s)	1122
XceI	RCATGY	2 cut(s)	884, 1243
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.