Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020900.1

Orthogroup ID

OG0010340

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3439

Gene Structure 3439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020900.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1036 bp

atggtgaaccggtggaatatttgctgcgagttgtatggagctttcggtggccggttcggtaggtttcctgccggttcttgtggttgggcgccggttctggattcctgggatcgacgacatcagggacttggattggtggagctgtgctgttgtgcgtgcgatgatctgcgcggaggagacgttgctgagcctgagataaacaattctgttccaaagttcaaaaccccgtctctgtattcaggcatctgtccgcatttcacatcaactctcaactatccagacctcctcccattttccccagaactgattccgatcaccgtcaaccacatccaaaccctcacaccccaatccaatcctcaccgttcaccaatggatccggttcttccaatcgcggtcctctccgtcctcatcggcgccgtcattgccctcgccttcttcggcagctacttccgcaagcggagctccgaagtcgagtccatttccaaaccggagctccacgccgatcagaaaaagcaaccggccaagcccgcccagcataagaagtcccacgccaagcctcactctgataaggatcacaacaagaagcaccatccgttggatgtgaatacgttgaaaggtcatggagattccgttgatggactgtgtttttctccggatggacggagtttggctacagcttgtgcggatggagtggtcagggtatttaagttggatgatgcttcaagtaaaagtttcaaatttctgaaaataaatacgccagttggtggtcctccagtagcagtttcattttctgatgatgcatcgtccttagttgtcgcttcccaaaatctttctggcgcttctttgtacatgtacggtggagtggaaaaacccaaaatttctaatgaatccggtcagccatccaaggttcctctcccagaaataaagtgggaacatcacaaaattcatgagaaattaggtattctcaccttatttgggaccactgcaagttatggcactgctgatgggagtgcaattattgcttcttgttctgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030968 GO:0031369 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042149 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051219 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

345

Amino Acids

37.22

Weight (kDa)

7.61

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00090
fragaria_vesca	FvH4_7g11840 FvH4_7g11840 FvH4_7g11840 FvH4_7g11840
malus_domestica	MD02G1204700.v1.1 MD07G1121300.v1.1
prunus_persica	Prupe.2G145000_v2.0.a1
pyrus_communis	pycom02g16680 pycom07g10320
rosa_chinensis	RchiOBHm_Chr1g0350521
rosa_laevigata	RLG00000028479
rosa_multiflora	Rmu_sc0020900.1_g000001 Rmu_ssc0000083.1_g000024
rosa_roxburghii	Rroxscaffold_4G00304790
rosa_rugosa	Rorug01G0211700
rosa_samantha	Rh1AG226400 Rh1BG194800 Rh1CG211200 Rh1DG223000
rosa_wichuraiana	Rw1G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	88, 413
AccB7I	CCANNNNNTGG	2 cut(s)	595, 764
AccII	CGCG	2 cut(s)	171, 392
AccIII	TCCGGA	1 cut(s)	652
AciI	CCGC	7 cut(s)	171, 251, 392, 451, 457, 528, 683
AclWI	GGATC	4 cut(s)	117, 368, 381, 579
AcoI	YGGCCR	2 cut(s)	49, 519
AcsI	RAATTY	3 cut(s)	737, 876, 942
AcyI	GRCGYC	2 cut(s)	89, 414
AfaI	GTAC	2 cut(s)	848, 854
AfiI	CCNNNNNNNGG	3 cut(s)	595, 764, 975
AflIII	ACRYGT	1 cut(s)	849
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	4 cut(s)	220, 613, 723, 736
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	6 cut(s)	41, 142, 444, 462, 493, 677
AluI	AGCT	6 cut(s)	41, 142, 444, 462, 493, 677
Alw21I	GWGCWC	2 cut(s)	464, 495
Alw26I	GTCTC	2 cut(s)	171, 234
AlwI	GGATC	4 cut(s)	117, 368, 381, 579
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	2 cut(s)	49, 519
ApeKI	GCWGC	2 cut(s)	24, 441
ApoI	RAATTY	3 cut(s)	737, 876, 942
AsiGI	ACCGGT	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	306
AspLEI	GCGC	4 cut(s)	91, 171, 416, 839
AspS9I	GGNCC	3 cut(s)	394, 767, 978
AsuHPI	GGTGA	5 cut(s)	16, 307, 350, 357, 958
AvaII	GGWCC	3 cut(s)	394, 767, 978
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	2 cut(s)	88, 413
BanII	GRGCYC	2 cut(s)	464, 495
Bbv12I	GWGCWC	2 cut(s)	464, 495
BbvI	GCAGC	2 cut(s)	11, 453
BccI	CCATC	6 cut(s)	597, 629, 650, 680, 907, 998
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	171, 234
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	3 cut(s)	92, 417, 840
BisI	GCNGC	2 cut(s)	25, 442
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	26, 443
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	3 cut(s)	394, 767, 978
BmgT120I	GGNCC	3 cut(s)	394, 767, 978
BmiI	GGNNCC	5 cut(s)	90, 375, 415, 909, 979
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	4 cut(s)	252, 706, 787, 809
BpmI	CTGGAG	1 cut(s)	756
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaBI	GATNNNNATC	2 cut(s)	311, 570
BsaHI	GRCGYC	2 cut(s)	89, 414
BsaJI	CCNNGG	2 cut(s)	105, 903
BsaWI	WCCGGW	5 cut(s)	9, 376, 487, 652, 890
BsaXI	ACNNNNNCTCC	6 cut(s)	165, 195, 477, 507, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	595, 764, 975
Bse118I	RCCGGY	5 cut(s)	9, 51, 71, 91, 517
Bse1I	ACTGG	2 cut(s)	758, 773
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	2 cut(s)	311, 570
BseAI	TCCGGA	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	105, 903
BseGI	GGATG	7 cut(s)	327, 589, 604, 661, 691, 718, 899
BseJI	GATNNNNATC	2 cut(s)	311, 570
BseLI	CCNNNNNNNGG	3 cut(s)	595, 764, 975
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	177, 183
BseNI	ACTGG	2 cut(s)	758, 773
BseRI	GAGGAG	2 cut(s)	189, 275
BseXI	GCAGC	2 cut(s)	11, 453
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	2 cut(s)	171, 392
BshFI	GGCC	2 cut(s)	51, 521
BshNI	GGYRCC	2 cut(s)	88, 413
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	464, 495
BsiSI	CCGG	9 cut(s)	10, 52, 72, 92, 377, 488, 518, 653, 891
BslFI	GGGAC	3 cut(s)	138, 529, 991
BslI	CCNNNNNNNGG	3 cut(s)	595, 764, 975
BsmAI	GTCTC	2 cut(s)	171, 234
BsmBI	CGTCTC	2 cut(s)	171, 234
BsmFI	GGGAC	3 cut(s)	138, 529, 991
BsnI	GGCC	2 cut(s)	51, 521
Bsp1286I	GDGCHC	2 cut(s)	464, 495
Bsp13I	TCCGGA	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	7 cut(s)	171, 251, 392, 451, 457, 528, 683
BspANI	GGCC	2 cut(s)	51, 521
BspCNI	CTCAG	2 cut(s)	178, 184
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	2 cut(s)	171, 392
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	5 cut(s)	90, 375, 415, 909, 979
BspPI	GGATC	4 cut(s)	117, 368, 381, 579
BspT107I	GGYRCC	2 cut(s)	88, 413
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	5 cut(s)	9, 51, 71, 91, 517
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	2 cut(s)	758, 773
BssAI	RCCGGY	5 cut(s)	9, 51, 71, 91, 517
BssECI	CCNNGG	2 cut(s)	105, 903
BssMI	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
BssNI	GRCGYC	2 cut(s)	89, 414
BssT1I	CCWWGG	1 cut(s)	903
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	4 cut(s)	319, 362, 642, 857
BstACI	GRCGYC	2 cut(s)	89, 414
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstAUI	TGTACA	1 cut(s)	846
BstC8I	GCNNGC	3 cut(s)	157, 455, 528
BstDEI	CTNAG	3 cut(s)	186, 192, 808
BstF5I	GGATG	7 cut(s)	327, 589, 604, 661, 691, 718, 899
BstFNI	CGCG	2 cut(s)	171, 392
BstH2I	RGCGCY	3 cut(s)	92, 417, 840
BstHHI	GCGC	4 cut(s)	91, 171, 416, 839
BstKTI	GATC	6 cut(s)	112, 166, 315, 376, 505, 574
BstMAI	GTCTC	2 cut(s)	171, 234
BstMBI	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
BstMWI	GCNNNNNNNGC	6 cut(s)	422, 450, 459, 527, 532, 1019
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	672
BstUI	CGCG	2 cut(s)	171, 392
BstV1I	GCAGC	2 cut(s)	11, 453
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	51, 521
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	7 cut(s)	327, 589, 604, 661, 691, 718, 899
BtsI	GCAGTG	2 cut(s)	981, 996
BtsIMutI	CAGTG	2 cut(s)	981, 996
Cac8I	GCNNGC	3 cut(s)	157, 455, 528
CciI	TCATGA	1 cut(s)	946
CfoI	GCGC	4 cut(s)	91, 171, 416, 839
Cfr10I	RCCGGY	5 cut(s)	9, 51, 71, 91, 517
Cfr13I	GGNCC	3 cut(s)	394, 767, 978
Csp6I	GTAC	2 cut(s)	847, 853
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	3 cut(s)	620, 850, 947
CviQI	GTAC	2 cut(s)	847, 853
DdeI	CTNAG	3 cut(s)	186, 192, 808
DinI	GGCGCC	2 cut(s)	90, 415
DpnI	GATC	6 cut(s)	111, 165, 314, 375, 504, 573
DpnII	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
EaeI	YGGCCR	2 cut(s)	49, 519
Ecl136II	GAGCTC	2 cut(s)	462, 493
Eco130I	CCWWGG	1 cut(s)	903
Eco24I	GRGCYC	2 cut(s)	464, 495
Eco47I	GGWCC	3 cut(s)	394, 767, 978
Eco53kI	GAGCTC	2 cut(s)	462, 493
EcoICRI	GAGCTC	2 cut(s)	462, 493
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	903
EcoT22I	ATGCAT	1 cut(s)	802
EcoT38I	GRGCYC	2 cut(s)	464, 495
EgeI	GGCGCC	2 cut(s)	90, 415
EheI	GGCGCC	2 cut(s)	90, 415
ErhI	CCWWGG	1 cut(s)	903
Esp3I	CGTCTC	2 cut(s)	171, 234
FaeI	CATG	3 cut(s)	623, 853, 950
FaiI	YATR	6 cut(s)	36, 537, 621, 851, 948, 993
FaqI	GGGAC	3 cut(s)	138, 529, 991
FatI	CATG	3 cut(s)	619, 849, 946
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	25, 442
FokI	GGATG	7 cut(s)	314, 576, 611, 668, 698, 725, 886
FriOI	GRGCYC	2 cut(s)	464, 495
Fsp4HI	GCNGC	2 cut(s)	25, 442
GlaI	GCGC	4 cut(s)	90, 170, 415, 838
GluI	GCNGC	2 cut(s)	25, 442
GsaI	CCCAGC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	3 cut(s)	92, 417, 840
HaeIII	GGCC	2 cut(s)	51, 521
HapII	CCGG	9 cut(s)	10, 52, 72, 92, 377, 488, 518, 653, 891
HhaI	GCGC	4 cut(s)	91, 171, 416, 839
Hin1I	GRCGYC	2 cut(s)	89, 414
Hin1II	CATG	3 cut(s)	623, 853, 950
Hin6I	GCGC	4 cut(s)	89, 169, 414, 837
HinP1I	GCGC	4 cut(s)	89, 169, 414, 837
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	101, 307, 473, 626, 887
HpaII	CCGG	9 cut(s)	10, 52, 72, 92, 377, 488, 518, 653, 891
HphI	GGTGA	5 cut(s)	16, 307, 350, 357, 958
Hpy166II	GTNNAC	3 cut(s)	7, 322, 365
Hpy188I	TCNGA	7 cut(s)	312, 466, 507, 565, 744, 793, 1033
Hpy188III	TCNNGA	4 cut(s)	98, 278, 653, 947
Hpy8I	GTNNAC	3 cut(s)	7, 322, 365
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	4 cut(s)	319, 362, 642, 857
HpyCH4IV	ACGT	2 cut(s)	180, 608
HpyCH4V	TGCA	3 cut(s)	800, 986, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	422, 450, 459, 527, 532, 1019
HpyF3I	CTNAG	3 cut(s)	186, 192, 808
HpySE526I	ACGT	2 cut(s)	180, 608
Hsp92I	GRCGYC	2 cut(s)	89, 414
Hsp92II	CATG	3 cut(s)	623, 853, 950
HspAI	GCGC	4 cut(s)	89, 169, 414, 837
KasI	GGCGCC	2 cut(s)	88, 413
Kpn2I	TCCGGA	1 cut(s)	652
Kzo9I	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
LmnI	GCTCC	6 cut(s)	38, 139, 459, 467, 490, 498
Lsp1109I	GCAGC	2 cut(s)	11, 453
LweI	GCATC	4 cut(s)	252, 706, 787, 809
MaeII	ACGT	2 cut(s)	180, 608
MalI	GATC	6 cut(s)	111, 165, 314, 375, 504, 573
MboI	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
MboII	GAAGA	2 cut(s)	374, 427
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	464, 495
MluCI	AATT	6 cut(s)	202, 737, 876, 942, 953, 1014
Mly113I	GGCGCC	2 cut(s)	89, 414
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	576, 690
Mph1103I	ATGCAT	1 cut(s)	802
MroI	TCCGGA	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	1 cut(s)	705
MspI	CCGG	9 cut(s)	10, 52, 72, 92, 377, 488, 518, 653, 891
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	171, 392
MwoI	GCNNNNNNNGC	6 cut(s)	422, 450, 459, 527, 532, 1019
NarI	GGCGCC	2 cut(s)	89, 414
NdeII	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
NlaIII	CATG	3 cut(s)	623, 853, 950
NlaIV	GGNNCC	5 cut(s)	90, 375, 415, 909, 979
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	853
PagI	TCATGA	1 cut(s)	946
PciI	ACATGT	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	101, 307, 626, 887
PflMI	CCANNNNNTGG	2 cut(s)	595, 764
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	26, 443
PleI	GAGTC	1 cut(s)	481
PluTI	GGCGCC	2 cut(s)	92, 417
PpsI	GAGTC	1 cut(s)	481
PscI	ACATGT	1 cut(s)	849
Psp124BI	GAGCTC	2 cut(s)	464, 495
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	5 cut(s)	90, 375, 415, 909, 979
PspPI	GGNCC	3 cut(s)	394, 767, 978
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	848, 854
RsaNI	GTAC	2 cut(s)	847, 853
SacI	GAGCTC	2 cut(s)	464, 495
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	2 cut(s)	25, 442
Sau3AI	GATC	6 cut(s)	109, 163, 312, 373, 502, 571
Sau96I	GGNCC	3 cut(s)	394, 767, 978
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	2 cut(s)	464, 495
SfaNI	GCATC	4 cut(s)	252, 706, 787, 809
SfcI	CTRYAG	1 cut(s)	672
SfoI	GGCGCC	2 cut(s)	90, 415
SinI	GGWCC	3 cut(s)	394, 767, 978
Sse9I	AATT	6 cut(s)	202, 737, 876, 942, 953, 1014
SsiI	CCGC	7 cut(s)	171, 251, 392, 451, 457, 528, 683
SspDI	GGCGCC	2 cut(s)	88, 413
SspI	AATATT	1 cut(s)	19
SstI	GAGCTC	2 cut(s)	464, 495
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	4 cut(s)	319, 362, 642, 857
TaiI	ACGT	2 cut(s)	183, 611
TaqI	TCGA	2 cut(s)	112, 471
TasI	AATT	6 cut(s)	202, 737, 876, 942, 953, 1014
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	4 cut(s)	101, 307, 626, 887
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	2 cut(s)	988, 1003
TseI	GCWGC	2 cut(s)	24, 441
TspDTI	ATGAA	3 cut(s)	774, 900, 935
TspGWI	ACGGA	4 cut(s)	391, 582, 619, 676
TspRI	CASTG	2 cut(s)	988, 1003
Van91I	CCANNNNNTGG	2 cut(s)	595, 764
VpaK11BI	GGWCC	3 cut(s)	394, 767, 978
XapI	RAATTY	3 cut(s)	737, 876, 942
XceI	RCATGY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	2 cut(s)	830, 924
XmnI	GAANNNNTTC	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.