Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010340

Physical Location & Seq

Genomic Coordinates Forward (+)

45596774 .. 45602670

Gene Structure 5897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATCCGGTTCTTCCAATCGCGGTCCTCTCCGTCCTCATCGGCGCCGTCATTGCCCTCGCCTTCTTCGGCAGCTACTTCCGCAAGCGGAGCTCCGAAGTCGAGTCCATTTCCAAACCGGAGCTCCACGCCGATCAGAAAAAGCAACCGGCCAAGCCCGCCCAGAATAAGAAGTCCCACGCCAAGCCTCACTCTGATAAGGATCACAACAAGAAGCACCATCCGTTGGATGTGAATACGTTGAAAGGTCATGGAGATTCCGTTGATGGACTGTGTTTTTCTCCTGATGGACGGAGTTTGGCTACAGCTTGTGCGGATGGAGTGGTCAGGGTATTTAAGTTGGATGATGCTTCGAGTAAAAGTTTCAAATTTCTGAAAATAAATACGCCAGTTGGTGGTCCTCCAGTAGCAGTTTCATTTTCTGATGATGCATCATCCTTAGTTGTCGCTTCCCAAAATCTTTCTGGCGCTTCTTTGTACATGTACGGTGGAGTGGAAAAACCCAAAATTTCTAATGAATCCGGTCAGCCATCCAAGGTTCCTCTCCCAGAAATAAAGTGGGAACATCACAAAATTCATGAGAAATTAGGTATTCTCACCTTATTTGGGACCACTGCAAGTTATGGCACTGCTGATGGGAGTGCAATTATTGCTTCTTGTTCTGAAGGTACTGACATCATAATTTGGCATGGTAAAACTGGCAAGAACTTGGGGCATGTTGACACAAATCAGTTGAAAAACAACATGGCTGCTATATCACCAAATGGACGTTTCATTGCTGCAGCAGCTTTTACTGCAGATGTGAAGGTATGGGAGATTGTATATTCAAAGGATGGATCGGTCAAGGAGGTTTCAAAAGCCATGCAACTTAAAGGGCATAAGAGTGCAGTGACTTGGTTATGCTTTACTCCAGACTCGGAACAAATTATCACAGCCTCAAAAGATGGTTCGATAAGAATTTGGAATATCAATGGTATGTATCAACATAATAATGTTTATGTCTGTACTTTCATCTTTTGGTATGCAGCTATTGTAAAAGGACTCCTTTGTCCCCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030968 GO:0031369 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042149 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051219 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

353

Amino Acids

38.14

Weight (kDa)

8.93

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	76 - 189	6e-08	THOC3 beta-propeller domain
WD40	PF00400	78 - 112	4.5e-08	WD domain, G-beta repeat
WD40_Prp19	PF24814	78 - 154	9.3e-07	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	179 - 325	5e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2	PF23414	210 - 340	5.3e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	212 - 325	1.4e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	215 - 324	8e-14	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	216 - 326	2.3e-08	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	221 - 324	1.2e-13	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	224 - 321	2.5e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	242 - 324	3.2e-06	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	250 - 324	3.3e-11	THOC3 beta-propeller domain
WDR55	PF24796	251 - 324	3.1e-06	WDR55
WD40_WDHD1_1st	PF24817	281 - 325	3.1e-08	WDHD1 first WD40 domain
WD40	PF00400	289 - 322	1.4e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00090
fragaria_vesca	FvH4_7g11840 FvH4_7g11840 FvH4_7g11840 FvH4_7g11840
malus_domestica	MD02G1204700.v1.1 MD07G1121300.v1.1
prunus_persica	Prupe.2G145000_v2.0.a1
pyrus_communis	pycom02g16680 pycom07g10320
rosa_chinensis	RchiOBHm_Chr1g0350521
rosa_laevigata	RLG00000028479
rosa_multiflora	Rmu_sc0020900.1_g000001 Rmu_ssc0000083.1_g000024
rosa_roxburghii	Rroxscaffold_4G00304790
rosa_rugosa	Rorug01G0211700
rosa_samantha	Rh1AG226400 Rh1BG194800 Rh1CG211200 Rh1DG223000
rosa_wichuraiana	Rw1G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1047
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	2 cut(s)	226, 395
AccII	CGCG	1 cut(s)	23
AciI	CCGC	5 cut(s)	23, 82, 88, 159, 314
AclWI	GGATC	3 cut(s)	12, 210, 844
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	368, 507, 573, 957
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	4 cut(s)	479, 485, 670, 1006
AfiI	CCNNNNNNNGG	3 cut(s)	226, 395, 606
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	5 cut(s)	244, 367, 736, 828, 855
AluBI	AGCT	6 cut(s)	75, 93, 124, 308, 788, 1028
AluI	AGCT	6 cut(s)	75, 93, 124, 308, 788, 1028
Alw21I	GWGCWC	2 cut(s)	95, 126
AlwI	GGATC	3 cut(s)	12, 210, 844
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	6 cut(s)	72, 749, 779, 782, 785, 1025
ApoI	RAATTY	4 cut(s)	368, 507, 573, 957
AspLEI	GCGC	2 cut(s)	47, 470
AspS9I	GGNCC	3 cut(s)	25, 398, 609
AsuHPI	GGTGA	2 cut(s)	589, 750
AvaII	GGWCC	3 cut(s)	25, 398, 609
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	95, 126
Bbv12I	GWGCWC	2 cut(s)	95, 126
BbvI	GCAGC	6 cut(s)	84, 736, 766, 794, 797, 1037
BccI	CCATC	8 cut(s)	228, 260, 281, 311, 538, 629, 827, 938
BceAI	ACGGC	1 cut(s)	32
BfmI	CTRYAG	3 cut(s)	303, 780, 795
BfoI	RGCGCY	2 cut(s)	48, 471
BisI	GCNGC	6 cut(s)	73, 750, 780, 783, 786, 1026
BlsI	GCNGC	6 cut(s)	74, 751, 781, 784, 787, 1027
Bme18I	GGWCC	3 cut(s)	25, 398, 609
BmgT120I	GGNCC	3 cut(s)	25, 398, 609
BmiI	GGNNCC	4 cut(s)	6, 46, 540, 610
BmsI	GCATC	3 cut(s)	337, 418, 440
BpmI	CTGGAG	2 cut(s)	387, 894
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	3 cut(s)	7, 118, 521
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 395, 606
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	389, 404, 703
Bse3DI	GCAATG	2 cut(s)	51, 774
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	7 cut(s)	220, 235, 322, 349, 434, 530, 838
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	226, 395, 606
BseMI	GCAATG	2 cut(s)	51, 774
BseNI	ACTGG	3 cut(s)	389, 404, 703
BseXI	GCAGC	6 cut(s)	84, 736, 766, 794, 797, 1037
BsgI	GTGCAG	1 cut(s)	906
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	95, 126
BsiSI	CCGG	4 cut(s)	8, 119, 149, 522
BslFI	GGGAC	3 cut(s)	160, 622, 1035
BslI	CCNNNNNNNGG	3 cut(s)	226, 395, 606
BsmFI	GGGAC	3 cut(s)	160, 622, 1035
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	95, 126
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	4, 133, 202, 836
BspACI	CCGC	5 cut(s)	23, 82, 88, 159, 314
BspANI	GGCC	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	4 cut(s)	6, 46, 540, 610
BspMAI	CTGCAG	2 cut(s)	784, 799
BspPI	GGATC	3 cut(s)	12, 210, 844
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	51, 774
BsrFI	RCCGGY	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	389, 404, 703
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	4 cut(s)	4, 133, 202, 836
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	273, 488
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	86, 159
BstDEI	CTNAG	1 cut(s)	439
BstF5I	GGATG	7 cut(s)	220, 235, 322, 349, 434, 530, 838
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	2 cut(s)	48, 471
BstHHI	GCGC	2 cut(s)	47, 470
BstKTI	GATC	4 cut(s)	7, 136, 205, 839
BstMBI	GATC	4 cut(s)	4, 133, 202, 836
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 81, 90, 158, 650, 785, 794
BstNSI	RCATGY	2 cut(s)	484, 719
BstSFI	CTRYAG	3 cut(s)	303, 780, 795
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	6 cut(s)	84, 736, 766, 794, 797, 1037
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	7 cut(s)	220, 235, 322, 349, 434, 530, 838
BtsI	GCAGTG	3 cut(s)	612, 627, 894
BtsIMutI	CAGTG	3 cut(s)	612, 627, 894
Cac8I	GCNNGC	2 cut(s)	86, 159
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	47, 470
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	25, 398, 609
Csp6I	GTAC	4 cut(s)	478, 484, 669, 1005
CviAII	CATG	7 cut(s)	251, 481, 578, 689, 716, 745, 862
CviQI	GTAC	4 cut(s)	478, 484, 669, 1005
DdeI	CTNAG	1 cut(s)	439
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	4 cut(s)	6, 135, 204, 838
DpnII	GATC	4 cut(s)	4, 133, 202, 836
DrdI	GACNNNNNNGTC	1 cut(s)	1047
DseDI	GACNNNNNNGTC	1 cut(s)	1047
EaeI	YGGCCR	1 cut(s)	150
Ecl136II	GAGCTC	2 cut(s)	93, 124
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	95, 126
Eco47I	GGWCC	3 cut(s)	25, 398, 609
Eco53kI	GAGCTC	2 cut(s)	93, 124
Eco57I	CTGAAG	1 cut(s)	684
EcoICRI	GAGCTC	2 cut(s)	93, 124
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	95, 126
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	7 cut(s)	254, 484, 581, 692, 719, 748, 865
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FaqI	GGGAC	3 cut(s)	160, 622, 1035
FatI	CATG	7 cut(s)	250, 480, 577, 688, 715, 744, 861
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	6 cut(s)	73, 750, 780, 783, 786, 1026
FokI	GGATG	7 cut(s)	207, 242, 329, 356, 421, 517, 845
FriOI	GRGCYC	2 cut(s)	95, 126
Fsp4HI	GCNGC	6 cut(s)	73, 750, 780, 783, 786, 1026
GlaI	GCGC	2 cut(s)	46, 469
GluI	GCNGC	6 cut(s)	73, 750, 780, 783, 786, 1026
GsuI	CTGGAG	2 cut(s)	387, 894
HaeII	RGCGCY	2 cut(s)	48, 471
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	4 cut(s)	8, 119, 149, 522
HhaI	GCGC	2 cut(s)	47, 470
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	7 cut(s)	254, 484, 581, 692, 719, 748, 865
Hin6I	GCGC	2 cut(s)	45, 468
HinP1I	GCGC	2 cut(s)	45, 468
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	5 cut(s)	104, 257, 518, 914, 1041
HpaII	CCGG	4 cut(s)	8, 119, 149, 522
HphI	GGTGA	2 cut(s)	589, 750
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	7 cut(s)	97, 138, 196, 375, 424, 664, 919
Hpy188III	TCNNGA	3 cut(s)	284, 578, 911
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	3 cut(s)	73, 659, 799
HpyCH4III	ACNGT	2 cut(s)	273, 488
HpyCH4IV	ACGT	2 cut(s)	239, 769
HpyCH4V	TGCA	8 cut(s)	431, 617, 644, 782, 797, 865, 887, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 81, 90, 158, 650, 785, 794
HpyF3I	CTNAG	1 cut(s)	439
HpySE526I	ACGT	2 cut(s)	239, 769
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	7 cut(s)	254, 484, 581, 692, 719, 748, 865
HspAI	GCGC	2 cut(s)	45, 468
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	4 cut(s)	4, 133, 202, 836
LmnI	GCTCC	4 cut(s)	90, 98, 121, 129
Lsp1109I	GCAGC	6 cut(s)	84, 736, 766, 794, 797, 1037
LweI	GCATC	3 cut(s)	337, 418, 440
MaeII	ACGT	2 cut(s)	239, 769
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	4 cut(s)	6, 135, 204, 838
MboI	GATC	4 cut(s)	4, 133, 202, 836
MboII	GAAGA	2 cut(s)	5, 58
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	95, 126
MluCI	AATT	8 cut(s)	368, 507, 573, 584, 645, 681, 924, 957
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	113, 908, 1035
MmeI	TCCRAC	2 cut(s)	207, 321
MnlI	CCTC	8 cut(s)	38, 47, 68, 198, 411, 552, 841, 946
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	2 cut(s)	336, 870
MslI	CAYNNNNRTG	2 cut(s)	882, 990
MspI	CCGG	4 cut(s)	8, 119, 149, 522
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	7 cut(s)	53, 81, 90, 158, 650, 785, 794
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	4 cut(s)	4, 133, 202, 836
NlaIII	CATG	7 cut(s)	254, 484, 581, 692, 719, 748, 865
NlaIV	GGNNCC	4 cut(s)	6, 46, 540, 610
NmuCI	GTSAC	1 cut(s)	889
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	484, 719
PagI	TCATGA	1 cut(s)	577
PciI	ACATGT	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	257, 518
PflMI	CCANNNNNTGG	2 cut(s)	226, 395
PkrI	GCNGC	6 cut(s)	74, 751, 781, 784, 787, 1027
PleI	GAGTC	3 cut(s)	112, 908, 1035
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	112, 908, 1035
PscI	ACATGT	1 cut(s)	480
Psp124BI	GAGCTC	2 cut(s)	95, 126
PspN4I	GGNNCC	4 cut(s)	6, 46, 540, 610
PspPI	GGNCC	3 cut(s)	25, 398, 609
PstI	CTGCAG	2 cut(s)	784, 799
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	4 cut(s)	479, 485, 670, 1006
RsaNI	GTAC	4 cut(s)	478, 484, 669, 1005
RseI	CAYNNNNRTG	2 cut(s)	882, 990
SacI	GAGCTC	2 cut(s)	95, 126
SaqAI	TTAA	2 cut(s)	336, 870
SatI	GCNGC	6 cut(s)	73, 750, 780, 783, 786, 1026
Sau3AI	GATC	4 cut(s)	4, 133, 202, 836
Sau96I	GGNCC	3 cut(s)	25, 398, 609
SchI	GAGTC	3 cut(s)	113, 908, 1035
SduI	GDGCHC	2 cut(s)	95, 126
SfaNI	GCATC	3 cut(s)	337, 418, 440
SfcI	CTRYAG	3 cut(s)	303, 780, 795
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	3 cut(s)	25, 398, 609
SmiMI	CAYNNNNRTG	2 cut(s)	882, 990
Sse9I	AATT	8 cut(s)	368, 507, 573, 584, 645, 681, 924, 957
SsiI	CCGC	5 cut(s)	23, 82, 88, 159, 314
SspDI	GGCGCC	1 cut(s)	44
SstI	GAGCTC	2 cut(s)	95, 126
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	273, 488
TaiI	ACGT	2 cut(s)	242, 772
TaqI	TCGA	3 cut(s)	102, 353, 950
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	8 cut(s)	368, 507, 573, 584, 645, 681, 924, 957
TatI	WGTACW	2 cut(s)	477, 1004
TfiI	GAWTC	2 cut(s)	257, 518
Tru1I	TTAA	2 cut(s)	336, 870
Tru9I	TTAA	2 cut(s)	336, 870
TscAI	CASTG	3 cut(s)	619, 634, 894
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	6 cut(s)	72, 749, 779, 782, 785, 1025
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	5 cut(s)	405, 531, 566, 763, 1000
TspGWI	ACGGA	4 cut(s)	22, 213, 250, 307
TspRI	CASTG	3 cut(s)	619, 634, 894
Van91I	CCANNNNNTGG	2 cut(s)	226, 395
VpaK11BI	GGWCC	3 cut(s)	25, 398, 609
XapI	RAATTY	4 cut(s)	368, 507, 573, 957
XceI	RCATGY	2 cut(s)	484, 719
XcmI	CCANNNNNNNNNTGG	2 cut(s)	461, 555
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.