Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010340

Physical Location & Seq

Genomic Coordinates Forward (+)

20187340 .. 20192947

Gene Structure 5608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G145000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGATCCGGTTCTTCTGATTGCGGTGCTCTCAATTCTGATCGGCGCTGTCATCGCTCTAGCCTTTTTTGGTAACTACTTCCGGAAACGGAGCTCCGAAATTCAGTCCATCTCCCAACCGGAGCTCCAATCGGACCCCAAAAAGCAGCCCTCCAAGCCTCACCAGACCAAGAAGTCTCATGCCAAACCTCACTCTCATACCTCTGACAAGGATCAAAATAAGAAACATCATCCGTTGGACGTGAATACTTTGAAAGGTCATGGAGATGCAGTCACTGGCCTTTGTTTCTCGTCGGACGGGCGGAGTTTGGCAACAGCTTGTGCGGATGGAGTGCTCAGGATATTCAAGTTGGATGATGCTTCGAGTAAAAGTTTCAAGTTTCTGAGAATTAATTTGCCTGTTGGAGGTCATCCTGTTGCAGTTTCATTTTCTGATGATGGATTATCTTTAGTTGCTGCTTCTCAAAGTCTTTCCGGTTCTTCTTTGTACATGTATGGGGTGGAAAAACCCAAACCTTCTGAGGAAGTAAAGCAGCAGCCCAAGCTTCCCCTGCCTGAAATCAAGTGGGAACATCACAAAGTTCACGAGAAATTAGGTATTCTCACCTTATCTGGGACCACCGCAAGTTATGGGAGTGCTGATGGGAGTACAATTGTTGCTTCATGCTCAGAAGGAACTGACATCATACTTTGGCATGGGAAAACCGGCAAGATTTTGGGGCATGTTGACACAAATCAGTTGAAAAACACCATGGCTGCTTTATCACCAAATGGGCGTTTCCTTGCTGCAGCTGCTTTTACTGCAGACGTGAAGGTGTGGGAGATTGTATATTCAAAGGATGGTTCAGTCAAGGAGGTCTCAAAAGCTATGCAACTTAAAGGGCATAAGAGTGCAGTAACTTGGTTATGCTTTACTCCTAACTCAGAACAAATTATCACAGCATCCAAAGATGGTTCAATAAGAATTTGGAATATCAATGTTCGATATCATATGGATGAGGATCCGAAAACTCTGAAGGTGTTTCCAATTCCACTTGATTTGGGTGGTGCAACTGTGCAGTATGATCGTCTTAGTTTATCTCCTGATGGAAAAATATTGGCAGCAACTCATGGTACAACACTACAGTGGCTATGTGTTGAAACTGGAAAGCTTTTGGACACAGCTGACAAAGCCCATGAAGGTGACATCACATGCATTGCATGGGCACCCAAGACGATTCCAATGGGTGATGAGAAAGTATTGGTTTTGGCCACATCAAGTATTGATAAGAAGGTAAAACTGTGGGCTGCTCCATCTCTCCCTGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030968 GO:0031369 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042149 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051219 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

437

Amino Acids

47.12

Weight (kDa)

8.79

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00090
fragaria_vesca	FvH4_7g11840 FvH4_7g11840 FvH4_7g11840 FvH4_7g11840
malus_domestica	MD02G1204700.v1.1 MD07G1121300.v1.1
prunus_persica	Prupe.2G145000_v2.0.a1
pyrus_communis	pycom02g16680 pycom07g10320
rosa_chinensis	RchiOBHm_Chr1g0350521
rosa_laevigata	RLG00000028479
rosa_multiflora	Rmu_sc0020900.1_g000001 Rmu_ssc0000083.1_g000024
rosa_roxburghii	Rroxscaffold_4G00304790
rosa_rugosa	Rorug01G0211700
rosa_samantha	Rh1AG226400 Rh1BG194800 Rh1CG211200 Rh1DG223000
rosa_wichuraiana	Rw1G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	1204
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	4 cut(s)	23, 301, 323, 621
AclWI	GGATC	4 cut(s)	12, 219, 995, 1008
AcoI	YGGCCR	1 cut(s)	1248
AcsI	RAATTY	2 cut(s)	99, 963
AcuI	CTGAAG	1 cut(s)	1034
AfaI	GTAC	3 cut(s)	488, 649, 1114
AfiI	CCNNNNNNNGG	2 cut(s)	404, 612
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	7 cut(s)	253, 346, 376, 742, 834, 957, 1139
AjiI	CACGTC	2 cut(s)	241, 808
AleI	CACNNNNGTG	1 cut(s)	1123
AluBI	AGCT	8 cut(s)	93, 124, 317, 544, 791, 866, 1150, 1163
AluI	AGCT	8 cut(s)	93, 124, 317, 544, 791, 866, 1150, 1163
Alw21I	GWGCWC	4 cut(s)	30, 95, 126, 336
Alw26I	GTCTC	2 cut(s)	180, 862
AlwI	GGATC	4 cut(s)	12, 219, 995, 1008
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	2 cut(s)	277, 1248
ApoI	RAATTY	2 cut(s)	99, 963
AseI	ATTAAT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	133, 615
AsuHPI	GGTGA	5 cut(s)	152, 595, 756, 1193, 1238
AvaII	GGWCC	2 cut(s)	133, 615
BaeGI	GKGCMC	1 cut(s)	1207
BalI	TGGCCA	1 cut(s)	1250
BamHI	GGATCC	2 cut(s)	4, 1000
BanI	GGYRCC	1 cut(s)	1204
BanII	GRGCYC	2 cut(s)	95, 126
BauI	CACGAG	1 cut(s)	584
Bbv12I	GWGCWC	4 cut(s)	30, 95, 126, 336
BccI	CCATC	8 cut(s)	116, 320, 431, 635, 833, 944, 1079, 1300
BcgI	CGANNNNNNTGC	2 cut(s)	1046, 1080
BcoDI	GTCTC	2 cut(s)	180, 862
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	3 cut(s)	786, 801, 1121
BfoI	RGCGCY	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	133, 615
BmgBI	CACGTC	2 cut(s)	241, 808
BmgT120I	GGNCC	2 cut(s)	133, 615
BmiI	GGNNCC	5 cut(s)	6, 135, 616, 1002, 1206
BmsI	GCATC	3 cut(s)	256, 346, 950
Bpu10I	CCTNAGC	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	862
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	4 cut(s)	7, 81, 118, 473
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 612
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	2 cut(s)	280, 1147
Bse3DI	GCAATG	1 cut(s)	1194
Bse8I	GATNNNNATC	1 cut(s)	999
BseAI	TCCGGA	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	7 cut(s)	229, 331, 358, 409, 844, 941, 1000
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	2 cut(s)	404, 612
BseMI	GCAATG	1 cut(s)	1194
BseMII	CTCAG	5 cut(s)	349, 374, 510, 681, 936
BseNI	ACTGG	2 cut(s)	280, 1147
BseSI	GKGCMC	1 cut(s)	1207
BsgI	GTGCAG	3 cut(s)	912, 1076, 1287
BshFI	GGCC	2 cut(s)	279, 1250
BshNI	GGYRCC	1 cut(s)	1204
BsiHKAI	GWGCWC	4 cut(s)	30, 95, 126, 336
BsiSI	CCGG	5 cut(s)	8, 82, 119, 474, 705
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	404, 612
BsmAI	GTCTC	2 cut(s)	180, 862
BsmFI	GGGAC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	279, 1250
Bso31I	GGTCTC	1 cut(s)	862
Bsp1286I	GDGCHC	5 cut(s)	30, 95, 126, 336, 1207
Bsp13I	TCCGGA	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	4, 39, 211, 1000, 1063
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	4 cut(s)	23, 301, 323, 621
BspANI	GGCC	2 cut(s)	279, 1250
BspCNI	CTCAG	5 cut(s)	348, 375, 511, 680, 935
BspEI	TCCGGA	1 cut(s)	81
BspLI	GGNNCC	5 cut(s)	6, 135, 616, 1002, 1206
BspMAI	CTGCAG	2 cut(s)	790, 805
BspPI	GGATC	4 cut(s)	12, 219, 995, 1008
BspT107I	GGYRCC	1 cut(s)	1204
BspTNI	GGTCTC	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	1194
BsrFI	RCCGGY	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	280, 1147
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	5 cut(s)	4, 39, 211, 1000, 1063
BssSI	CACGAG	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	1054, 1125, 1281
BstAUI	TGTACA	1 cut(s)	486
BstDEI	CTNAG	6 cut(s)	335, 383, 519, 667, 922, 1070
BstDSI	CCRYGG	1 cut(s)	750
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	7 cut(s)	229, 331, 358, 409, 844, 941, 1000
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	5 cut(s)	7, 42, 214, 1003, 1066
BstMAI	GTCTC	2 cut(s)	180, 862
BstMBI	GATC	5 cut(s)	4, 39, 211, 1000, 1063
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 154, 541, 550, 791, 800, 1169
BstNSI	RCATGY	3 cut(s)	493, 725, 1194
BstSFI	CTRYAG	3 cut(s)	786, 801, 1121
BstSLI	GKGCMC	1 cut(s)	1207
BstX2I	RGATCY	2 cut(s)	4, 1000
BstYI	RGATCY	2 cut(s)	4, 1000
BsuRI	GGCC	2 cut(s)	279, 1250
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	1 cut(s)	37
BtrI	CACGTC	2 cut(s)	241, 808
BtsCI	GGATG	7 cut(s)	229, 331, 358, 409, 844, 941, 1000
BtsIMutI	CAGTG	2 cut(s)	273, 1130
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	133, 615
Csp6I	GTAC	3 cut(s)	487, 648, 1113
CspCI	CAANNNNNGTGG	2 cut(s)	1020, 1055
CviQI	GTAC	3 cut(s)	487, 648, 1113
DdeI	CTNAG	6 cut(s)	335, 383, 519, 667, 922, 1070
DpnI	GATC	5 cut(s)	6, 41, 213, 1002, 1065
DpnII	GATC	5 cut(s)	4, 39, 211, 1000, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	1248
EciI	GGCGGA	1 cut(s)	316
Ecl136II	GAGCTC	2 cut(s)	93, 124
Eco130I	CCWWGG	1 cut(s)	750
Eco24I	GRGCYC	2 cut(s)	95, 126
Eco31I	GGTCTC	1 cut(s)	862
Eco32I	GATATC	1 cut(s)	986
Eco47I	GGWCC	2 cut(s)	133, 615
Eco53kI	GAGCTC	2 cut(s)	93, 124
Eco57I	CTGAAG	1 cut(s)	1034
EcoICRI	GAGCTC	2 cut(s)	93, 124
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	986
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	1196
EcoT38I	GRGCYC	2 cut(s)	95, 126
ErhI	CCWWGG	1 cut(s)	750
FaqI	GGGAC	1 cut(s)	628
FauNDI	CATATG	1 cut(s)	990
FokI	GGATG	7 cut(s)	216, 338, 365, 396, 851, 928, 1007
FriOI	GRGCYC	2 cut(s)	95, 126
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	279, 1250
HapII	CCGG	5 cut(s)	8, 82, 119, 474, 705
HhaI	GCGC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	2 cut(s)	542, 1148
HinfI	GANTC	1 cut(s)	1216
HpaII	CCGG	5 cut(s)	8, 82, 119, 474, 705
HphI	GGTGA	5 cut(s)	152, 595, 756, 1193, 1238
Hpy166II	GTNNAC	2 cut(s)	583, 727
Hpy188III	TCNNGA	4 cut(s)	82, 337, 584, 1082
Hpy8I	GTNNAC	2 cut(s)	583, 727
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	6 cut(s)	525, 665, 805, 1009, 1172, 1264
HpyCH4III	ACNGT	3 cut(s)	1054, 1125, 1281
HpyCH4IV	ACGT	2 cut(s)	240, 807
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 154, 541, 550, 791, 800, 1169
HpyF3I	CTNAG	6 cut(s)	335, 383, 519, 667, 922, 1070
HpySE526I	ACGT	2 cut(s)	240, 807
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	4, 39, 211, 1000, 1063
LmnI	GCTCC	5 cut(s)	90, 98, 121, 129, 1294
LweI	GCATC	3 cut(s)	256, 346, 950
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	240, 807
MaeIII	GTNAC	4 cut(s)	71, 271, 895, 1181
MalI	GATC	5 cut(s)	6, 41, 213, 1002, 1065
MboI	GATC	5 cut(s)	4, 39, 211, 1000, 1063
MboII	GAAGA	2 cut(s)	5, 471
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	2 cut(s)	4, 1000
MhlI	GDGCHC	5 cut(s)	30, 95, 126, 336, 1207
MlsI	TGGCCA	1 cut(s)	1250
MluCI	AATT	9 cut(s)	33, 99, 387, 391, 590, 651, 930, 963, 1026
MluNI	TGGCCA	1 cut(s)	1250
MmeI	TCCRAC	4 cut(s)	216, 273, 330, 382
MnlI	CCTC	8 cut(s)	160, 168, 198, 211, 398, 514, 847, 991
Mox20I	TGGCCA	1 cut(s)	1250
Mph1103I	ATGCAT	1 cut(s)	1196
MroI	TCCGGA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	1250
MseI	TTAA	2 cut(s)	390, 876
MslI	CAYNNNNRTG	5 cut(s)	264, 888, 993, 1123, 1179
Msp20I	TGGCCA	1 cut(s)	1250
MspA1I	CMGCKG	2 cut(s)	791, 1163
MspI	CCGG	5 cut(s)	8, 82, 119, 474, 705
MunI	CAATTG	1 cut(s)	651
MwoI	GCNNNNNNNGC	7 cut(s)	53, 154, 541, 550, 791, 800, 1169
NcoI	CCATGG	1 cut(s)	750
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	5 cut(s)	4, 39, 211, 1000, 1063
NlaIV	GGNNCC	5 cut(s)	6, 135, 616, 1002, 1206
NmuCI	GTSAC	2 cut(s)	271, 1181
NsiI	ATGCAT	1 cut(s)	1196
NspI	RCATGY	3 cut(s)	493, 725, 1194
OliI	CACNNNNGTG	1 cut(s)	1123
PciI	ACATGT	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	1216
PscI	ACATGT	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	390
Psp124BI	GAGCTC	2 cut(s)	95, 126
PspN4I	GGNNCC	5 cut(s)	6, 135, 616, 1002, 1206
PspPI	GGNCC	2 cut(s)	133, 615
PstI	CTGCAG	2 cut(s)	790, 805
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	4, 1000
PvuII	CAGCTG	2 cut(s)	791, 1163
RsaI	GTAC	3 cut(s)	488, 649, 1114
RsaNI	GTAC	3 cut(s)	487, 648, 1113
RseI	CAYNNNNRTG	5 cut(s)	264, 888, 993, 1123, 1179
SacI	GAGCTC	2 cut(s)	95, 126
SaqAI	TTAA	2 cut(s)	390, 876
Sau3AI	GATC	5 cut(s)	4, 39, 211, 1000, 1063
Sau96I	GGNCC	2 cut(s)	133, 615
SduI	GDGCHC	5 cut(s)	30, 95, 126, 336, 1207
SfaNI	GCATC	3 cut(s)	256, 346, 950
SfcI	CTRYAG	3 cut(s)	786, 801, 1121
SinI	GGWCC	2 cut(s)	133, 615
SmiMI	CAYNNNNRTG	5 cut(s)	264, 888, 993, 1123, 1179
Sse9I	AATT	9 cut(s)	33, 99, 387, 391, 590, 651, 930, 963, 1026
SsiI	CCGC	4 cut(s)	23, 301, 323, 621
SspI	AATATT	1 cut(s)	1095
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	2 cut(s)	95, 126
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	3 cut(s)	1054, 1125, 1281
TaiI	ACGT	2 cut(s)	243, 810
TaqI	TCGA	2 cut(s)	362, 982
TasI	AATT	9 cut(s)	33, 99, 387, 391, 590, 651, 930, 963, 1026
TatI	WGTACW	2 cut(s)	486, 647
TfiI	GAWTC	1 cut(s)	1216
Tru1I	TTAA	2 cut(s)	390, 876
Tru9I	TTAA	2 cut(s)	390, 876
TscAI	CASTG	2 cut(s)	280, 1130
TseFI	GTSAC	2 cut(s)	271, 1181
Tsp45I	GTSAC	2 cut(s)	271, 1181
TspDTI	ATGAA	3 cut(s)	414, 651, 1191
TspGWI	ACGGA	2 cut(s)	103, 222
TspRI	CASTG	2 cut(s)	280, 1130
VpaK11BI	GGWCC	2 cut(s)	133, 615
VspI	ATTAAT	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	2 cut(s)	99, 963
XceI	RCATGY	3 cut(s)	493, 725, 1194
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.