Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010340

Physical Location & Seq

Genomic Coordinates Forward (+)

43311315 .. 43317348

Gene Structure 6034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG223000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATCCGGTTCTTCCAATCGCGGTCCTCTCCGTCCTCATCGGCGCCGTCATTGCCCTCGCCTTCTTCGGCAGCTACTTCCGCAAGCGAAGCTCCGAAGTCGAGTCCATTTCCAAACCGGAGCTCCACGCCGATCAGAAAAAGCAACCGGCCAAGCCCGCCCAGCATAAGAAGGCTCACGCCAAGCCTCACTCTGATAAGGATCACAACAAGAAGCACCATCCGTTGGATGTGAATACGTTGAAAGGTCATGGAGATTCCGTTGATGGACTGTGTTTTTCTCCTGATGGACGGAGTTTGGCTACAGCTTGTGCGGATGGAGTGGTCAGGGTATTCAAGTTGGATGATGCTTCGAGTAAAAGTTTCAAATTTCTGAAAATAAATACGCCAGTTGGTGGCCCTCCGGTAGCAGTTTCATTTTCTGATGATGCATCATCCTTAGTTGTCGCTTCCCAAAATCTTTCTGGCGCTTCTTTGTACATGTACGGTGGAGTGGAAAAACCCAAAATTTCTAATGAATCCGGTCAGCCATCCAAGGTTCCTCTCCCAGAAATAAAGTGGGAACAGCACAAAATTCATGAGAAATTAGGTATTCTCACCTTATTTGGGACCACTGCAAGTTATGGCACTGCTGATGGGAGTGCAATTATTGCTTCTTGTTCTGAAGGTACTGACATCATAATTTGGCATGGTAAAACTGGCAAGAACTTGGGGCATGTTGACACAAATCAGTTGAAAAACAACATGGCTGCTATATCACCAAATGGACGTTTCATTGCTGCAGCAGCTTTTACTGCAGATGTGAAGGTATGGGAGATCGTATATTCAAAGGATGGATCGGTCAAGGAGGTTTCAAAAGCCATGCAACTTAAAGGGCATAAGGTTATATGTTTTTATGTTAAACTAGATGATTTTAAGCATGTCTTCATAAACCCTCTCTGTAGTTTTATTAATTGTGAAAAATTCCCTGCCTCTTCATATCAGGAAGCTTGGCGGTTTTCAATTTACCATAGAACAGCATATGTTGATCTCATTCAATGGCACCAACATAGATGTTTAGCATTAGCCAAATTAAATTTTTTTAATGTTAAAATTTTTTTTTTATATTTGATTGTCCTAATTCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030968 GO:0031369 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042149 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051219 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

376

Amino Acids

41.35

Weight (kDa)

9.1

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	75 - 271	1.2e-06	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	76 - 176	9.2e-08	THOC3 beta-propeller domain
WD40_Prp19	PF24814	78 - 154	8.9e-07	Prp19 WD40 domain
WD40	PF00400	78 - 112	4.9e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00090
fragaria_vesca	FvH4_7g11840 FvH4_7g11840 FvH4_7g11840 FvH4_7g11840
malus_domestica	MD02G1204700.v1.1 MD07G1121300.v1.1
prunus_persica	Prupe.2G145000_v2.0.a1
pyrus_communis	pycom02g16680 pycom07g10320
rosa_chinensis	RchiOBHm_Chr1g0350521
rosa_laevigata	RLG00000028479
rosa_multiflora	Rmu_sc0020900.1_g000001 Rmu_ssc0000083.1_g000024
rosa_roxburghii	Rroxscaffold_4G00304790
rosa_rugosa	Rorug01G0211700
rosa_samantha	Rh1AG226400 Rh1BG194800 Rh1CG211200 Rh1DG223000
rosa_wichuraiana	Rw1G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	44, 1041
AccB7I	CCANNNNNTGG	2 cut(s)	226, 395
AccII	CGCG	1 cut(s)	23
AciI	CCGC	5 cut(s)	23, 82, 159, 314, 994
AclWI	GGATC	3 cut(s)	12, 210, 844
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	6 cut(s)	368, 507, 573, 962, 1075, 1092
AcuI	CTGAAG	2 cut(s)	684, 1109
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	3 cut(s)	479, 485, 670
AfiI	CCNNNNNNNGG	3 cut(s)	226, 395, 606
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	8 cut(s)	244, 337, 367, 736, 828, 855, 1002, 1037
AluBI	AGCT	6 cut(s)	75, 93, 124, 308, 788, 989
AluI	AGCT	6 cut(s)	75, 93, 124, 308, 788, 989
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	12, 210, 844
AoxI	GGCC	2 cut(s)	150, 397
ApeKI	GCWGC	5 cut(s)	72, 749, 779, 782, 785
ApoI	RAATTY	6 cut(s)	368, 507, 573, 962, 1075, 1092
AseI	ATTAAT	1 cut(s)	951
AspLEI	GCGC	2 cut(s)	47, 470
AspS9I	GGNCC	3 cut(s)	25, 398, 609
AsuHPI	GGTGA	2 cut(s)	589, 750
AvaII	GGWCC	2 cut(s)	25, 609
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	44, 1041
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	5 cut(s)	84, 736, 766, 794, 797
BccI	CCATC	7 cut(s)	228, 260, 281, 311, 538, 629, 827
BceAI	ACGGC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	905
BfmI	CTRYAG	4 cut(s)	303, 780, 795, 940
BfoI	RGCGCY	2 cut(s)	48, 471
BisI	GCNGC	5 cut(s)	73, 750, 780, 783, 786
BlsI	GCNGC	5 cut(s)	74, 751, 781, 784, 787
Bme18I	GGWCC	2 cut(s)	25, 609
BmgT120I	GGNCC	3 cut(s)	25, 398, 609
BmiI	GGNNCC	5 cut(s)	6, 46, 540, 610, 1043
BmsI	GCATC	3 cut(s)	337, 418, 440
BpiI	GAAGAC	1 cut(s)	916
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	4 cut(s)	7, 118, 403, 521
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 395, 606
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	389, 703
Bse3DI	GCAATG	2 cut(s)	51, 774
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	7 cut(s)	220, 235, 322, 349, 434, 530, 838
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	226, 395, 606
BseMI	GCAATG	2 cut(s)	51, 774
BseNI	ACTGG	2 cut(s)	389, 703
BseXI	GCAGC	5 cut(s)	84, 736, 766, 794, 797
BseYI	CCCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	152, 399
BshNI	GGYRCC	2 cut(s)	44, 1041
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	5 cut(s)	8, 119, 149, 404, 522
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	3 cut(s)	226, 395, 606
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	152, 399
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
BspACI	CCGC	5 cut(s)	23, 82, 159, 314, 994
BspANI	GGCC	2 cut(s)	152, 399
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	6, 46, 540, 610, 1043
BspMAI	CTGCAG	2 cut(s)	784, 799
BspPI	GGATC	3 cut(s)	12, 210, 844
BspT107I	GGYRCC	2 cut(s)	44, 1041
BsrDI	GCAATG	2 cut(s)	51, 774
BsrFI	RCCGGY	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	389, 703
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	273, 488
Bst6I	CTCTTC	1 cut(s)	979
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	86, 159
BstDEI	CTNAG	1 cut(s)	439
BstF5I	GGATG	7 cut(s)	220, 235, 322, 349, 434, 530, 838
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	2 cut(s)	48, 471
BstHHI	GCGC	2 cut(s)	47, 470
BstKTI	GATC	6 cut(s)	7, 136, 205, 819, 839, 1030
BstMBI	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 81, 90, 158, 163, 650, 785, 794
BstNSI	RCATGY	3 cut(s)	484, 719, 923
BstSFI	CTRYAG	4 cut(s)	303, 780, 795, 940
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	5 cut(s)	84, 736, 766, 794, 797
BstV2I	GAAGAC	1 cut(s)	916
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	152, 399
BtsCI	GGATG	7 cut(s)	220, 235, 322, 349, 434, 530, 838
BtsI	GCAGTG	2 cut(s)	612, 627
BtsIMutI	CAGTG	2 cut(s)	612, 627
Cac8I	GCNNGC	2 cut(s)	86, 159
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	47, 470
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	25, 398, 609
Csp6I	GTAC	3 cut(s)	478, 484, 669
CviAII	CATG	8 cut(s)	251, 481, 578, 689, 716, 745, 862, 920
CviQI	GTAC	3 cut(s)	478, 484, 669
DdeI	CTNAG	1 cut(s)	439
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	6 cut(s)	6, 135, 204, 818, 838, 1029
DpnII	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	979
EarI	CTCTTC	1 cut(s)	979
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	25, 609
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	684, 1109
EcoICRI	GAGCTC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	8 cut(s)	254, 484, 581, 692, 719, 748, 865, 923
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	8 cut(s)	250, 480, 577, 688, 715, 744, 861, 919
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	1021
Fnu4HI	GCNGC	5 cut(s)	73, 750, 780, 783, 786
FokI	GGATG	7 cut(s)	207, 242, 329, 356, 421, 517, 845
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	73, 750, 780, 783, 786
FspBI	CTAG	1 cut(s)	905
GlaI	GCGC	2 cut(s)	46, 469
GluI	GCNGC	5 cut(s)	73, 750, 780, 783, 786
GsaI	CCCAGC	1 cut(s)	166
HaeII	RGCGCY	2 cut(s)	48, 471
HaeIII	GGCC	2 cut(s)	152, 399
HapII	CCGG	5 cut(s)	8, 119, 149, 404, 522
HhaI	GCGC	2 cut(s)	47, 470
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	8 cut(s)	254, 484, 581, 692, 719, 748, 865, 923
Hin6I	GCGC	2 cut(s)	45, 468
HinP1I	GCGC	2 cut(s)	45, 468
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	987
HinfI	GANTC	3 cut(s)	104, 257, 518
HpaII	CCGG	5 cut(s)	8, 119, 149, 404, 522
HphI	GGTGA	2 cut(s)	589, 750
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	6 cut(s)	97, 138, 196, 375, 424, 664
Hpy188III	TCNNGA	3 cut(s)	284, 578, 983
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	4 cut(s)	73, 166, 659, 799
HpyCH4III	ACNGT	2 cut(s)	273, 488
HpyCH4IV	ACGT	2 cut(s)	239, 769
HpyCH4V	TGCA	6 cut(s)	431, 617, 644, 782, 797, 865
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 81, 90, 158, 163, 650, 785, 794
HpyF3I	CTNAG	1 cut(s)	439
HpySE526I	ACGT	2 cut(s)	239, 769
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	8 cut(s)	254, 484, 581, 692, 719, 748, 865, 923
HspAI	GCGC	2 cut(s)	45, 468
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
LmnI	GCTCC	3 cut(s)	98, 121, 129
Lsp1109I	GCAGC	5 cut(s)	84, 736, 766, 794, 797
LweI	GCATC	3 cut(s)	337, 418, 440
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	2 cut(s)	239, 769
MalI	GATC	6 cut(s)	6, 135, 204, 818, 838, 1029
MboI	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
MboII	GAAGA	5 cut(s)	5, 58, 916, 966, 1115
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	207, 321
MnlI	CCTC	9 cut(s)	38, 47, 68, 198, 411, 552, 841, 945, 982
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	7 cut(s)	870, 900, 915, 951, 1073, 1083, 1089
MspI	CCGG	5 cut(s)	8, 119, 149, 404, 522
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	8 cut(s)	53, 81, 90, 158, 163, 650, 785, 794
NarI	GGCGCC	1 cut(s)	45
NdeI	CATATG	1 cut(s)	1021
NdeII	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
NlaIII	CATG	8 cut(s)	254, 484, 581, 692, 719, 748, 865, 923
NlaIV	GGNNCC	5 cut(s)	6, 46, 540, 610, 1043
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	3 cut(s)	484, 719, 923
PagI	TCATGA	1 cut(s)	577
PciI	ACATGT	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	257, 518
PflMI	CCANNNNNTGG	2 cut(s)	226, 395
PkrI	GCNGC	5 cut(s)	74, 751, 781, 784, 787
PleI	GAGTC	1 cut(s)	112
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	951
Psp124BI	GAGCTC	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	5 cut(s)	6, 46, 540, 610, 1043
PspPI	GGNCC	3 cut(s)	25, 398, 609
PstI	CTGCAG	2 cut(s)	784, 799
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	479, 485, 670
RsaNI	GTAC	3 cut(s)	478, 484, 669
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	7 cut(s)	870, 900, 915, 951, 1073, 1083, 1089
SatI	GCNGC	5 cut(s)	73, 750, 780, 783, 786
Sau3AI	GATC	6 cut(s)	4, 133, 202, 816, 836, 1027
Sau96I	GGNCC	3 cut(s)	25, 398, 609
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	3 cut(s)	337, 418, 440
SfcI	CTRYAG	4 cut(s)	303, 780, 795, 940
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	2 cut(s)	25, 609
SsiI	CCGC	5 cut(s)	23, 82, 159, 314, 994
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	905
SstI	GAGCTC	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	273, 488
TaiI	ACGT	2 cut(s)	242, 772
TaqI	TCGA	2 cut(s)	102, 353
TaqII	GACCGA	1 cut(s)	829
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	257, 518
Tru1I	TTAA	7 cut(s)	870, 900, 915, 951, 1073, 1083, 1089
Tru9I	TTAA	7 cut(s)	870, 900, 915, 951, 1073, 1083, 1089
TscAI	CASTG	2 cut(s)	619, 634
TseI	GCWGC	5 cut(s)	72, 749, 779, 782, 785
TspDTI	ATGAA	6 cut(s)	405, 531, 566, 763, 916, 966
TspGWI	ACGGA	4 cut(s)	22, 213, 250, 307
TspRI	CASTG	2 cut(s)	619, 634
Van91I	CCANNNNNTGG	2 cut(s)	226, 395
VpaK11BI	GGWCC	2 cut(s)	25, 609
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	6 cut(s)	368, 507, 573, 962, 1075, 1092
XceI	RCATGY	3 cut(s)	484, 719, 923
XcmI	CCANNNNNNNNNTGG	2 cut(s)	461, 555
XspI	CTAG	1 cut(s)	905
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.