FvH4_7g12400

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018473
Physical Location & Seq
Reverse (-)
11282554 .. 11282974
421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12400.t1

Sequence Viewer

Length: 318 bp
ATGGTGTTGGGAGGAACATCTTATCACGTCGGGCGTGCTGCTGACTGGAACGATCATCTGTTTGATTACCAGGGTTGGGCTTGGGGCATCTTTTTCCATGTCGGAGATTCTCTAGTTTTCAGTTACCATGCAGATGTACACTCTGTGGTTGTAGCAAGTAATCGTGAACTGTATGATGCATGTTCTTCAACTCCAAACTTGGGGGTGTATCAGAGCGGATATGAAGAACTAGTCTTGCCGGTTGCTGGAACCTATTATTTCTTCTGTGGAAATCAATGCAACCAAGGAATGAAATTTATCATCACTGTCGACCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

106

Amino Acids

11.72

Weight (kDa)

4.74

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 16 - 97 7.6e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 216
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 293
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 76, 200, 245
AgsI TTSAA 1 cut(s) 189
AhlI ACTAGT 1 cut(s) 229
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 293
BbvI GCAGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 3 cut(s) 113, 230, 316
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 96, 166
BsaJI CCNNGG 2 cut(s) 70, 283
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 200, 245
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 70, 283
BseLI CCNNNNNNNGG 3 cut(s) 76, 200, 245
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 3 cut(s) 76, 200, 245
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 250
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 70, 283
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 171, 307
BstAUI TGTACA 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 25
BtrI CACGTC 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 1 cut(s) 137
CviAII CATG 3 cut(s) 98, 128, 180
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 1 cut(s) 137
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DraIII CACNNNGTG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 101, 131, 183
FaiI YATR 5 cut(s) 99, 129, 174, 181, 222
FatI CATG 3 cut(s) 97, 127, 179
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 113, 230, 316
GluI GCNGC 1 cut(s) 39
HapII CCGG 1 cut(s) 239
Hin1II CATG 3 cut(s) 101, 131, 183
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 3 cut(s) 139, 167, 310
Hpy188I TCNGA 2 cut(s) 104, 213
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 3 cut(s) 139, 167, 310
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 171, 307
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 131, 179, 279
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 101, 131, 183
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 31, 56, 83, 231, 252
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 96, 166
MaeI CTAG 3 cut(s) 113, 230, 316
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 122
MalI GATC 1 cut(s) 54
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 52
MboII GAAGA 3 cut(s) 177, 236, 253
MluCI AATT 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
NdeII GATC 1 cut(s) 52
NlaIII CATG 3 cut(s) 101, 131, 183
NlaIV GGNNCC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 183
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 250
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 308
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 71
SetI ASST 2 cut(s) 30, 254
SfaNI GCATC 2 cut(s) 96, 166
SmiMI CAYNNNNRTG 1 cut(s) 132
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 1 cut(s) 293
SsiI CCGC 1 cut(s) 216
SspMI CTAG 3 cut(s) 113, 230, 316
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 171, 307
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 237, 305
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 3 cut(s) 113, 230, 316
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.