Rh1DG228900

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018473
Physical Location & Seq
Reverse (-)
44049760 .. 44050782
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG228900.1

Sequence Viewer

Length: 375 bp
ATGGCACGATTCAATACAGCGAGTCTCAAACTAATTGTCTTTTTCGTTTTTCCGAGCATGGTGTTGAGTGCACAATATTGGGTCGGAGACGATGATATTGGCTGGGGAACTTTTGGAGAAGATTACATGAGGTGGGCTGCTAGCAAAAATTTCCATGTCGGAGATGTTCTCATCTTCAGCTATGATGCAAAATTACACAATCTTGTTGTAGCAGCTAATAGTGACCTATATGAGCAATGTAATTACACTCCAAACTTGGGAGTGTATCAGAGCGGCTTCGACACTTTAACTTTGCCGGTTGCTGGGACGTATTATTTCTTCTGTTCATATCATTGCCACCCGTTCGCAATGAAATTTTACATTAATGTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

124

Amino Acids

14.18

Weight (kDa)

5.29

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 111 1.6e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AciI CCGC 1 cut(s) 273
AcsI RAATTY 2 cut(s) 148, 353
AcuI CTGAAG 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 257, 302
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 180, 215
AluI AGCT 2 cut(s) 180, 215
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 29, 81
Alw44I GTGCAC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 137, 212
ApoI RAATTY 2 cut(s) 148, 353
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AseI ATTAAT 1 cut(s) 363
AsuNHI GCTAGC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 124, 224
BcoDI GTCTC 2 cut(s) 29, 81
BfaI CTAG 2 cut(s) 141, 373
BisI GCNGC 3 cut(s) 138, 213, 274
BlsI GCNGC 3 cut(s) 139, 214, 275
BmsI GCATC 1 cut(s) 175
BmtI GCTAGC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 153, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 302
Bse118I RCCGGY 1 cut(s) 295
Bse3DI GCAATG 3 cut(s) 242, 331, 354
BseLI CCNNNNNNNGG 2 cut(s) 257, 302
BseMI GCAATG 3 cut(s) 242, 331, 354
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 124, 224
BseYI CCCAGC 2 cut(s) 102, 302
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 257, 302
BsmAI GTCTC 2 cut(s) 29, 81
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 73
BspACI CCGC 1 cut(s) 273
BspOI GCTAGC 1 cut(s) 144
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 3 cut(s) 242, 331, 354
BsrFI RCCGGY 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 29, 81
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 124, 224
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 295
CviAII CATG 3 cut(s) 58, 127, 155
CviJI RGCY 5 cut(s) 102, 137, 180, 215, 276
CviKI_1 RGCY 5 cut(s) 102, 137, 180, 215, 276
Eco57I CTGAAG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 61, 130, 158
FaiI YATR 7 cut(s) 59, 128, 156, 183, 229, 231, 328
FaqI GGGAC 1 cut(s) 319
FatI CATG 3 cut(s) 57, 126, 154
Fnu4HI GCNGC 3 cut(s) 138, 213, 274
Fsp4HI GCNGC 3 cut(s) 138, 213, 274
FspBI CTAG 2 cut(s) 141, 373
GluI GCNGC 3 cut(s) 138, 213, 274
GsaI CCCAGC 2 cut(s) 106, 306
HapII CCGG 1 cut(s) 296
Hin1II CATG 3 cut(s) 61, 130, 158
HinfI GANTC 2 cut(s) 9, 22
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 4 cut(s) 54, 86, 161, 270
Hpy8I GTNNAC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 71, 188
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 61, 130, 158
LpnPI CCDG 3 cut(s) 88, 288, 309
Lsp1109I GCAGC 2 cut(s) 124, 224
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 141, 373
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 221, 367
MbiI CCGCTC 1 cut(s) 273
MboII GAAGA 3 cut(s) 131, 166, 310
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 5 cut(s) 33, 148, 191, 241, 353
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 64, 139
MnlI CCTC 1 cut(s) 123
MseI TTAA 2 cut(s) 287, 363
MspI CCGG 1 cut(s) 296
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 3 cut(s) 61, 130, 158
NmuCI GTSAC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 3 cut(s) 139, 214, 275
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 363
PspFI CCCAGC 2 cut(s) 102, 302
SaqAI TTAA 2 cut(s) 287, 363
SatI GCNGC 3 cut(s) 138, 213, 274
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 134, 182, 217, 228, 311, 374
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 5 cut(s) 33, 148, 191, 241, 353
SsiI CCGC 1 cut(s) 273
SspI AATATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 141, 373
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 279
TasI AATT 5 cut(s) 33, 148, 191, 241, 353
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 287, 363
Tru9I TTAA 2 cut(s) 287, 363
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 137, 212
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 315, 365
VneI GTGCAC 1 cut(s) 69
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 2 cut(s) 148, 353
XspI CTAG 2 cut(s) 141, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.