Rh1BG201500

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018473
Physical Location & Seq
Reverse (-)
31851304 .. 31886630
35327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG201500.1

Sequence Viewer

Length: 522 bp
ATGGCACGATTCAATACAGCGAGTCTCAAACTAATTGTCTTTTTCGTTTTTCCGAGCATGGTGTTGAGTGCACAATATTGGGTCGGAGACGATGATATTGGCTGGGGAACTTTTGGAGAAGATTACATGAGGTGGGCTGCTAGCAAAAATTTCCATGTCGGAGATGTTCTCATCTTCAGCTATGATGCAAAAATACACAATCTTGTCGTAGCAGCTAATAGTGACCTATATGAGCAATTTTTTCCGATCATGGTGTTGGGAGGAACAGCTTATCACGTCGGACGTGCTGCTGACTGGAACGATCATCTGTTCGATTACCAGGGTTGGGCTTGGAGCATAAATTTCCAAGTCGGAGATTCTCTAGCAGCTAATCGTGTACTGTATGATGGATGTTCTGCAACTCCAAACTTGGGAGTGTATCAGAGCGGATATGAAGAATTAGTCTTGCCGGTTGCTGGGACCTATTATTTCTTCTGCGGAAATCAATGCAACCAAGGAATGAAATTTGTTGTCACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

4.63

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 77 3.1e-09 Plastocyanin-like domain
Cu_bind_like PF02298 99 - 167 7.6e-06 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 426
AciI CCGC 2 cut(s) 426, 477
AcsI RAATTY 3 cut(s) 148, 340, 503
AcuI CTGAAG 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 519
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 3 cut(s) 325, 410, 455
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 2 cut(s) 277, 284
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 4 cut(s) 180, 215, 269, 368
AluI AGCT 4 cut(s) 180, 215, 269, 368
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 29, 81
Alw44I GTGCAC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 4 cut(s) 137, 212, 287, 365
ApoI RAATTY 3 cut(s) 148, 340, 503
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AspS9I GGNCC 1 cut(s) 459
AsuNHI GCTAGC 1 cut(s) 140
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 124, 224, 274, 377
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 29, 81
BfaI CTAG 2 cut(s) 141, 362
BisI GCNGC 4 cut(s) 138, 213, 288, 366
BlsI GCNGC 4 cut(s) 139, 214, 289, 367
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 459
BmgBI CACGTC 2 cut(s) 277, 284
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 175
BmtI GCTAGC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BsaJI CCNNGG 2 cut(s) 319, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 410, 455
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 319, 493
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 3 cut(s) 325, 410, 455
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 4 cut(s) 124, 224, 274, 377
BseYI CCCAGC 2 cut(s) 102, 455
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 3 cut(s) 325, 410, 455
BsmAI GTCTC 2 cut(s) 29, 81
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 246, 301
BspACI CCGC 2 cut(s) 426, 477
BspLI GGNNCC 1 cut(s) 460
BspOI GCTAGC 1 cut(s) 144
BsrBI CCGCTC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 319, 493
BssMI GATC 2 cut(s) 246, 301
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 381, 517
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 2 cut(s) 249, 304
BstMAI GTCTC 2 cut(s) 29, 81
BstMBI GATC 2 cut(s) 246, 301
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 4 cut(s) 124, 224, 274, 377
BtrI CACGTC 2 cut(s) 277, 284
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 459
Csp6I GTAC 1 cut(s) 377
CviAII CATG 4 cut(s) 58, 127, 155, 250
CviJI RGCY 7 cut(s) 102, 137, 180, 215, 269, 329, 368
CviKI_1 RGCY 7 cut(s) 102, 137, 180, 215, 269, 329, 368
CviQI GTAC 1 cut(s) 377
DpnI GATC 2 cut(s) 248, 303
DpnII GATC 2 cut(s) 246, 301
DraIII CACNNNGTG 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 4 cut(s) 61, 130, 158, 253
FaqI GGGAC 1 cut(s) 472
FatI CATG 4 cut(s) 57, 126, 154, 249
Fnu4HI GCNGC 4 cut(s) 138, 213, 288, 366
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 138, 213, 288, 366
FspBI CTAG 2 cut(s) 141, 362
GluI GCNGC 4 cut(s) 138, 213, 288, 366
GsaI CCCAGC 2 cut(s) 106, 459
HapII CCGG 1 cut(s) 449
Hin1II CATG 4 cut(s) 61, 130, 158, 253
HinfI GANTC 3 cut(s) 9, 22, 356
HpaII CCGG 1 cut(s) 449
Hpy166II GTNNAC 2 cut(s) 71, 377
Hpy188I TCNGA 7 cut(s) 54, 86, 161, 246, 281, 353, 423
Hpy8I GTNNAC 2 cut(s) 71, 377
Hpy99I CGWCG 1 cut(s) 281
HpyCH4III ACNGT 2 cut(s) 381, 517
HpyCH4IV ACGT 2 cut(s) 276, 283
HpyCH4V TGCA 4 cut(s) 71, 188, 398, 489
HpySE526I ACGT 2 cut(s) 276, 283
Hsp92II CATG 4 cut(s) 61, 130, 158, 253
Kzo9I GATC 2 cut(s) 246, 301
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 88, 280, 305, 332, 441, 462
Lsp1109I GCAGC 4 cut(s) 124, 224, 274, 377
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 141, 362
MaeII ACGT 2 cut(s) 276, 283
MaeIII GTNAC 2 cut(s) 221, 511
MalI GATC 2 cut(s) 248, 303
MbiI CCGCTC 1 cut(s) 426
MboI GATC 2 cut(s) 246, 301
MboII GAAGA 4 cut(s) 131, 166, 446, 463
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 6 cut(s) 33, 148, 236, 340, 437, 503
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 4 cut(s) 64, 139, 259, 331
MnlI CCTC 2 cut(s) 123, 254
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
NdeII GATC 2 cut(s) 246, 301
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 61, 130, 158, 253
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 221, 511
PfeI GAWTC 2 cut(s) 9, 356
PkrI GCNGC 4 cut(s) 139, 214, 289, 367
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 2 cut(s) 102, 455
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 459
PspPPI RGGWCCY 1 cut(s) 459
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SatI GCNGC 4 cut(s) 138, 213, 288, 366
Sau3AI GATC 2 cut(s) 246, 301
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 73
SetI ASST 9 cut(s) 134, 182, 217, 228, 271, 279, 286, 370, 464
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 1 cut(s) 459
Sse9I AATT 6 cut(s) 33, 148, 236, 340, 437, 503
SsiI CCGC 2 cut(s) 426, 477
SspI AATATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 141, 362
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 2 cut(s) 381, 517
TaiI ACGT 2 cut(s) 279, 286
TaqI TCGA 1 cut(s) 312
TasI AATT 6 cut(s) 33, 148, 236, 340, 437, 503
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 2 cut(s) 9, 356
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 2 cut(s) 221, 511
TseI GCWGC 4 cut(s) 137, 212, 287, 365
Tsp45I GTSAC 2 cut(s) 221, 511
TspDTI ATGAA 2 cut(s) 447, 515
TspRI CASTG 1 cut(s) 520
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 3 cut(s) 148, 340, 503
XspI CTAG 2 cut(s) 141, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.