FvH4_7g12410

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018473
Physical Location & Seq
Reverse (-)
11284484 .. 11284955
472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12410.t1

Sequence Viewer

Length: 381 bp
ATGGCACGATACTGCAGTAAAGCGAGTCTTGGTTTGGTGATCGTCTTTTTCGTTTTTCCGAGCATGGTGTTGAGTGCACAATATTGGGTCGGAGGCAGCCCCGACGGCTGGGGAACGTTTGAAGAAGATTACATGAACTGGGCTGCTAGCAAAACCTTCCATGTAGGAGATGTCCTCCTCTTCAGCTATGATTCAAAACTACACGATCTTGTTGTAGCAGCTAATAGCGACTTATATGAGCAATGTAATCCAACTCCAAACTTGGGAGTGTATCAGACCGGCATGGAGTCTTTAACTTTGCCGGTTGCGGGGACCTATTATTTCTTCTGTTCATTTCATTGCCACCCATTCGCAATGAAATTCTACATCAATGTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

127

Amino Acids

14.17

Weight (kDa)

5.04

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 113 3.7e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AclI AACGTT 1 cut(s) 116
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 108, 263, 308
AgsI TTSAA 2 cut(s) 122, 195
AluBI AGCT 2 cut(s) 186, 221
AluI AGCT 2 cut(s) 186, 221
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 96, 143, 218
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 49
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 79
BaeI ACNNNNGTAYC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 108, 130, 230
BceAI ACGGC 1 cut(s) 121
BfaI CTAG 2 cut(s) 147, 379
BfmI CTRYAG 1 cut(s) 13
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 3 cut(s) 97, 144, 219
BlsI GCNGC 3 cut(s) 98, 145, 220
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 148
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 159, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 263, 308
Bse118I RCCGGY 2 cut(s) 278, 301
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 3 cut(s) 248, 337, 360
BseLI CCNNNNNNNGG 3 cut(s) 108, 263, 308
BseMI GCAATG 3 cut(s) 248, 337, 360
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 3 cut(s) 108, 130, 230
BseYI CCCAGC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 2 cut(s) 279, 302
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 3 cut(s) 108, 263, 308
BsmFI GGGAC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 39, 205
BspACI CCGC 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 17
BspOI GCTAGC 1 cut(s) 150
BsrDI GCAATG 3 cut(s) 248, 337, 360
BsrFI RCCGGY 2 cut(s) 278, 301
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 2 cut(s) 278, 301
BssMI GATC 2 cut(s) 39, 205
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 42, 208
BstMBI GATC 2 cut(s) 39, 205
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 108, 130, 230
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 2 cut(s) 278, 301
Cfr13I GGNCC 1 cut(s) 312
CviAII CATG 4 cut(s) 64, 133, 161, 283
CviJI RGCY 5 cut(s) 99, 108, 143, 186, 221
CviKI_1 RGCY 5 cut(s) 99, 108, 143, 186, 221
DpnI GATC 2 cut(s) 41, 207
DpnII GATC 2 cut(s) 39, 205
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 312
FaeI CATG 4 cut(s) 67, 136, 164, 286
FaiI YATR 7 cut(s) 65, 134, 162, 189, 235, 237, 284
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 325
FatI CATG 4 cut(s) 63, 132, 160, 282
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 97, 144, 219
Fsp4HI GCNGC 3 cut(s) 97, 144, 219
FspBI CTAG 2 cut(s) 147, 379
GluI GCNGC 3 cut(s) 97, 144, 219
GsaI CCCAGC 1 cut(s) 112
HapII CCGG 2 cut(s) 279, 302
Hin1II CATG 4 cut(s) 67, 136, 164, 286
HinfI GANTC 3 cut(s) 25, 191, 287
HpaII CCGG 2 cut(s) 279, 302
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 60, 92, 276
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 15, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 4 cut(s) 67, 136, 164, 286
Kzo9I GATC 2 cut(s) 39, 205
LpnPI CCDG 4 cut(s) 94, 124, 292, 315
Lsp1109I GCAGC 3 cut(s) 108, 130, 230
MaeI CTAG 2 cut(s) 147, 379
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 41, 207
MboI GATC 2 cut(s) 39, 205
MboII GAAGA 4 cut(s) 134, 137, 172, 316
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 359
MlyI GAGTC 2 cut(s) 34, 296
MmeI TCCRAC 2 cut(s) 70, 275
MnlI CCTC 3 cut(s) 86, 185, 188
MseI TTAA 1 cut(s) 293
MspI CCGG 2 cut(s) 279, 302
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 2 cut(s) 39, 205
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 4 cut(s) 67, 136, 164, 286
NlaIV GGNNCC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 98, 145, 220
PleI GAGTC 2 cut(s) 33, 295
PpsI GAGTC 2 cut(s) 33, 295
PpuMI RGGWCCY 1 cut(s) 312
Psp1406I AACGTT 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 312
PspPPI RGGWCCY 1 cut(s) 312
PstI CTGCAG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 3 cut(s) 97, 144, 219
Sau3AI GATC 2 cut(s) 39, 205
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 2 cut(s) 34, 296
SduI GDGCHC 1 cut(s) 79
SetI ASST 6 cut(s) 119, 158, 188, 223, 317, 380
SfcI CTRYAG 1 cut(s) 13
SinI GGWCC 1 cut(s) 312
Sse9I AATT 1 cut(s) 359
SsiI CCGC 1 cut(s) 308
SspI AATATT 1 cut(s) 83
SspMI CTAG 2 cut(s) 147, 379
TaiI ACGT 1 cut(s) 119
TasI AATT 1 cut(s) 359
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseI GCWGC 3 cut(s) 96, 143, 218
TspDTI ATGAA 4 cut(s) 149, 321, 326, 371
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 1 cut(s) 359
XspI CTAG 2 cut(s) 147, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.