Rorug01G0217000

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018473
Physical Location & Seq
Forward (+)
31040847 .. 31042433
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0217000.1

Sequence Viewer

Length: 1587 bp
ATGGAGGAATGGGAAAGTATATTGAACAGTGACATGTGGGAGTTCTCATCCGATGAGAGTGACATCCTGCCATCTCTATGGTTAAGCTATCAAGATCTGCCTCTACATCTCAAGCGTTGTTTTGCCTATTGTTCACTATATCCCAAGAACCATGTATTTCAAAAATCAGAGTTGATTCACTTATGGAAGGCTGAAGATCTATTGCAACATAAAAAAAACAAAATGGCAGAAGAAGTCGGACAAGACTACTTCAATGATCTAATCTCAAGATCATTTTTTCAACTTTCATCAAGTTCCGATCACTATTTCATCATGCATGACCTTATCAATGATTTAGCAAGCTTTGTATCTAGAGAATTTTGTTTTAGGTGGGAGGGCAGTGATTCACCCAACAGTTTGAGCAAGATTCGTCATTTTTCAGATATGTCAGTATATTATCATGATGAAGCTGATAGCGTAGAGATGTTTGAGGCTTTACAGCAAGCTAAATGTTTGCGCACCTTTCTATCATTACCACGTCTGTGGAGGAAGTTGCACAAAGGACGATGTGATATATTGCCAAAATCACAATGTTTAAGAGTGCTCAAGTTATATGGGCACAATATTAAGGAATTGCCTGATTCAATTAACAATCTCAAACATCTTACGTACTTGGACTTGTCTGCGAATCCCATCAAGAAGTTACCTAATACAATTTGTACTTTGTATAACTTGCAAGTTTTGTTGTTGTCAGGCTGTCCAGGACTTACTCAACTGCCAGCCAACTTGGGAAGATTGATCAACTTGAGCCATCTGGATATTACAAGGACAAAGTTACAAAAGATGCCACCACAAATGGGTAAGTTGAAAGACCTCCAGATGCTACCAGAGTTTGTGCTAGACAAACACACTGCTCTGGATAATTTGCCAGAGTTAAAGAAGCTTGAAAAATTGAATGGAAGTCTTAGAATATCAGGGCTTGTGCATAGCAGGGGTTTGGAGGCCTACATACTGAGCGACAAGAAGTTTCTTAAGGAACTGGAATTGGATTGGAGAGGAAGGGCTTGGAGTGAAGAAGGCAATAATACCGTAGAACAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAAAGTCTTACGATTGAAGGTTATGGAGGCAAAATGTTTCCAGGTTGGTCAGAATATTATTCTTCCTCTGCTCTTGTTTATCTTAAACTTGTCAATTGTGAGAATTGTATCTCCTTGCCACCATTGGGACAGCTACCTTCCCTCACAGAGCTTTATATAGAAGGGTTAAGGAAAGTGGTATCCATAGGTTCTGAATTCTATTATGGTGACGGCAAGACAACTACTTGTGTTAACAAACCATTTAGATCTCTACGGGCTTTAAAATTCTTCCATATGAGTGGGTGGCAAGATTGGTCTTATGTTGGAGGTGACAATAATGAAGGTGGGGTTTTTCCTTATCTTGAGGAACTTAAAATATCATGCTGTCCCAATCTTACCGGGATATCAGTCTCCCATCTCTTGTGTCTTTCACGGTATGGATTTGCCCAGAATTCGAATGTTTTCCGGAAGATGGATTCCCGTCAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

528

Amino Acids

60.87

Weight (kDa)

6.63

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 46 - 113 4.9e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 157 - 269 9.7e-15 Leucine-rich repeat region
LRR_14 PF23598 188 - 493 4.9e-27 Leucine-rich repeat region
LRR_8 PF13855 192 - 246 5.5e-06 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 303 - 427 1.3e-31 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 497
AccIII TCCGGA 1 cut(s) 1560
AcsI RAATTY 4 cut(s) 356, 1310, 1379, 1546
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 650, 700
AfiI CCNNNNNNNGG 4 cut(s) 836, 1114, 1241, 1567
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 9 cut(s) 25, 161, 253, 281, 624, 847, 926, 934, 1133
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 3 cut(s) 739, 1113, 1156
AleI CACNNNNGTG 1 cut(s) 520
AluBI AGCT 8 cut(s) 87, 342, 449, 485, 922, 1096, 1249, 1267
AluI AGCT 8 cut(s) 87, 342, 449, 485, 922, 1096, 1249, 1267
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 1 cut(s) 1510
Aor13HI TCCGGA 1 cut(s) 1560
AoxI GGCC 1 cut(s) 981
ApoI RAATTY 4 cut(s) 356, 1310, 1379, 1546
Asp700I GAANNNNTTC 1 cut(s) 1556
AspLEI GCGC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 1495
AsuHPI GGTGA 4 cut(s) 378, 1097, 1334, 1436
AsuII TTCGAA 1 cut(s) 1550
BaeGI GKGCMC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 585
BccI CCATC 5 cut(s) 79, 680, 798, 1518, 1561
BceAI ACGGC 1 cut(s) 1342
BciT130I CCWGG 3 cut(s) 741, 1115, 1158
BciVI GTATCC 1 cut(s) 1306
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 1495
BcoDI GTCTC 1 cut(s) 1510
BfaI CTAG 2 cut(s) 351, 878
BfrI CTTAAG 1 cut(s) 1010
BfuI GTATCC 1 cut(s) 1306
BglII AGATCT 3 cut(s) 94, 196, 1361
Bme1390I CCNGG 4 cut(s) 741, 1115, 1158, 1495
BmgBI CACGTC 1 cut(s) 518
BmrFI CCNGG 4 cut(s) 741, 1115, 1158, 1495
BmsI GCATC 2 cut(s) 813, 849
BpmI CTGGAG 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 1550
BpuEI CTTGAG 6 cut(s) 95, 250, 569, 805, 1109, 1478
BpuMI CCSGG 1 cut(s) 1495
BsaAI YACGTR 1 cut(s) 648
BsaWI WCCGGW 1 cut(s) 1560
Bsc4I CCNNNNNNNGG 4 cut(s) 836, 1114, 1241, 1567
Bse1I ACTGG 1 cut(s) 1023
BseAI TCCGGA 1 cut(s) 1560
BseBI CCWGG 3 cut(s) 741, 1115, 1158
BseGI GGATG 2 cut(s) 47, 63
BseLI CCNNNNNNNGG 4 cut(s) 836, 1114, 1241, 1567
BseMII CTCAG 1 cut(s) 983
BseNI ACTGG 1 cut(s) 1023
BseSI GKGCMC 1 cut(s) 600
BshFI GGCC 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 2 cut(s) 1494, 1561
BslFI GGGAC 2 cut(s) 1257, 1467
BslI CCNNNNNNNGG 4 cut(s) 836, 1114, 1241, 1567
BsmAI GTCTC 1 cut(s) 1510
BsmFI GGGAC 2 cut(s) 1257, 1467
BsnI GGCC 1 cut(s) 983
Bsp119I TTCGAA 1 cut(s) 1550
Bsp1286I GDGCHC 2 cut(s) 585, 600
Bsp13I TCCGGA 1 cut(s) 1560
Bsp143I GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
BspANI GGCC 1 cut(s) 983
BspCNI CTCAG 1 cut(s) 984
BspEI TCCGGA 1 cut(s) 1560
BspHI TCATGA 1 cut(s) 439
BspT104I TTCGAA 1 cut(s) 1550
BspTI CTTAAG 1 cut(s) 1010
BsrI ACTGG 1 cut(s) 1023
BssMI GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
Bst2UI CCWGG 3 cut(s) 741, 1115, 1158
Bst4CI ACNGT 4 cut(s) 29, 395, 1069, 1530
BstAFI CTTAAG 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 648
BstBI TTCGAA 1 cut(s) 1550
BstC8I GCNNGC 3 cut(s) 340, 483, 759
BstDEI CTNAG 2 cut(s) 944, 992
BstF5I GGATG 2 cut(s) 47, 63
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 7 cut(s) 97, 199, 259, 272, 301, 780, 1364
BstMAI GTCTC 1 cut(s) 1510
BstMBI GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
BstMWI GCNNNNNNNGC 1 cut(s) 1093
BstNI CCWGG 3 cut(s) 741, 1115, 1158
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 4 cut(s) 739, 1113, 1156, 1493
BstSLI GKGCMC 1 cut(s) 600
BstSNI TACGTA 1 cut(s) 648
BstX2I RGATCY 3 cut(s) 94, 196, 1361
BstXI CCANNNNNNTGG 3 cut(s) 78, 522, 1394
BstYI RGATCY 3 cut(s) 94, 196, 1361
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 1 cut(s) 983
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 2 cut(s) 47, 63
BtsI GCAGTG 2 cut(s) 385, 888
BtsIMutI CAGTG 3 cut(s) 34, 385, 888
Cac8I GCNNGC 3 cut(s) 340, 483, 759
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 498
Csp6I GTAC 2 cut(s) 649, 699
CviAII CATG 6 cut(s) 34, 152, 313, 317, 440, 1476
CviQI GTAC 2 cut(s) 649, 699
DdeI CTNAG 2 cut(s) 944, 992
DpnI GATC 7 cut(s) 96, 198, 258, 271, 300, 779, 1363
DpnII GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
DraI TTTAAA 1 cut(s) 1377
Eco105I TACGTA 1 cut(s) 648
Eco147I AGGCCT 1 cut(s) 983
Eco32I GATATC 1 cut(s) 1500
Eco57I CTGAAG 1 cut(s) 213
EcoRI GAATTC 2 cut(s) 1310, 1546
EcoRII CCWGG 3 cut(s) 739, 1113, 1156
EcoRV GATATC 1 cut(s) 1500
EcoT22I ATGCAT 1 cut(s) 318
FaeI CATG 6 cut(s) 37, 155, 316, 320, 443, 1479
FaqI GGGAC 2 cut(s) 1257, 1467
FatI CATG 6 cut(s) 33, 151, 312, 316, 439, 1475
FauNDI CATATG 1 cut(s) 1389
FbaI TGATCA 1 cut(s) 777
FokI GGATG 2 cut(s) 34, 50
FspBI CTAG 2 cut(s) 351, 878
FspI TGCGCA 1 cut(s) 497
GlaI GCGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 1 cut(s) 983
HapII CCGG 2 cut(s) 1494, 1561
HhaI GCGC 1 cut(s) 498
Hin1II CATG 6 cut(s) 37, 155, 316, 320, 443, 1479
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 1 cut(s) 1348
HindII GTYRAC 1 cut(s) 1348
HindIII AAGCTT 2 cut(s) 340, 920
HinfI GANTC 6 cut(s) 175, 383, 406, 620, 667, 1571
HpaI GTTAAC 1 cut(s) 1348
HpaII CCGG 2 cut(s) 1494, 1561
HphI GGTGA 4 cut(s) 378, 1097, 1334, 1436
Hpy166II GTNNAC 2 cut(s) 134, 1348
Hpy188I TCNGA 7 cut(s) 52, 169, 239, 298, 421, 1168, 1309
Hpy8I GTNNAC 2 cut(s) 134, 1348
HpyAV CCTTC 7 cut(s) 181, 1032, 1049, 1127, 1263, 1271, 1430
HpyCH4III ACNGT 4 cut(s) 29, 395, 1069, 1530
HpyCH4IV ACGT 2 cut(s) 517, 647
HpyCH4V TGCA 5 cut(s) 205, 316, 535, 715, 964
HpyF10VI GCNNNNNNNGC 1 cut(s) 1093
HpyF3I CTNAG 2 cut(s) 944, 992
HpySE526I ACGT 2 cut(s) 517, 647
Hsp92II CATG 6 cut(s) 37, 155, 316, 320, 443, 1479
HspAI GCGC 1 cut(s) 496
Kpn2I TCCGGA 1 cut(s) 1560
Ksp22I TGATCA 1 cut(s) 777
KspAI GTTAAC 1 cut(s) 1348
Kzo9I GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
LmnI GCTCC 1 cut(s) 1101
LweI GCATC 2 cut(s) 813, 849
MaeI CTAG 2 cut(s) 351, 878
MaeII ACGT 2 cut(s) 517, 647
MaeIII GTNAC 6 cut(s) 29, 59, 681, 813, 1322, 1424
MalI GATC 7 cut(s) 96, 198, 258, 271, 300, 779, 1363
MboI GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
MboII GAAGA 7 cut(s) 206, 242, 783, 1064, 1170, 1375, 1576
MfeI CAATTG 1 cut(s) 1210
MflI RGATCY 3 cut(s) 94, 196, 1361
MhlI GDGCHC 2 cut(s) 585, 600
MmeI TCCRAC 3 cut(s) 217, 1123, 1399
Mph1103I ATGCAT 1 cut(s) 318
MroI TCCGGA 1 cut(s) 1560
MroXI GAANNNNTTC 1 cut(s) 1556
MslI CAYNNNNRTG 3 cut(s) 76, 520, 1392
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 2 cut(s) 1494, 1561
MspR9I CCNGG 4 cut(s) 741, 1115, 1158, 1495
MunI CAATTG 1 cut(s) 1210
MvaI CCWGG 3 cut(s) 741, 1115, 1158
MwoI GCNNNNNNNGC 1 cut(s) 1093
NciI CCSGG 1 cut(s) 1495
NdeI CATATG 1 cut(s) 1389
NdeII GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
NlaIII CATG 6 cut(s) 37, 155, 316, 320, 443, 1479
NmuCI GTSAC 4 cut(s) 29, 59, 1322, 1424
NsbI TGCGCA 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 1 cut(s) 1550
OliI CACNNNNGTG 1 cut(s) 520
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 1 cut(s) 983
PciI ACATGT 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 1556
PfeI GAWTC 6 cut(s) 175, 383, 406, 620, 667, 1571
PfoI TCCNGGA 1 cut(s) 739
Ppu21I YACGTR 1 cut(s) 648
PscI ACATGT 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 739, 1113, 1156
PspGI CCWGG 3 cut(s) 739, 1113, 1156
PsuI RGATCY 3 cut(s) 94, 196, 1361
RsaI GTAC 2 cut(s) 650, 700
RsaNI GTAC 2 cut(s) 649, 699
RseI CAYNNNNRTG 3 cut(s) 76, 520, 1392
Sau3AI GATC 7 cut(s) 94, 196, 256, 269, 298, 777, 1361
ScrFI CCNGG 4 cut(s) 741, 1115, 1158, 1495
SduI GDGCHC 2 cut(s) 585, 600
SfaNI GCATC 2 cut(s) 813, 849
SfuI TTCGAA 1 cut(s) 1550
SmiMI CAYNNNNRTG 3 cut(s) 76, 520, 1392
SmlI CTYRAG 7 cut(s) 110, 265, 584, 784, 1010, 1088, 1457
SmoI CTYRAG 7 cut(s) 110, 265, 584, 784, 1010, 1088, 1457
SnaBI TACGTA 1 cut(s) 648
SseBI AGGCCT 1 cut(s) 983
SspI AATATT 2 cut(s) 604, 1172
SspMI CTAG 2 cut(s) 351, 878
StuI AGGCCT 1 cut(s) 983
StyD4I CCNGG 4 cut(s) 739, 1113, 1156, 1493
TaaI ACNGT 4 cut(s) 29, 395, 1069, 1530
TaiI ACGT 2 cut(s) 520, 650
TaqI TCGA 1 cut(s) 1550
TatI WGTACW 1 cut(s) 698
TfiI GAWTC 6 cut(s) 175, 383, 406, 620, 667, 1571
TscAI CASTG 3 cut(s) 34, 385, 895
TseFI GTSAC 4 cut(s) 29, 59, 1322, 1424
Tsp45I GTSAC 4 cut(s) 29, 59, 1322, 1424
TspDTI ATGAA 4 cut(s) 276, 298, 459, 1449
TspRI CASTG 3 cut(s) 34, 385, 895
Vha464I CTTAAG 1 cut(s) 1010
XapI RAATTY 4 cut(s) 356, 1310, 1379, 1546
XbaI TCTAGA 1 cut(s) 350
XceI RCATGY 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 1556
XspI CTAG 2 cut(s) 351, 878
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.