Basic blue protein-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g12400 FvH4_7g12410 |
| rosa_chinensis | RchiOBHm_Chr1g0351221 |
| rosa_roxburghii | Rroxscaffold_4G00303960 Rroxscaffold_4G00303970 |
| rosa_rugosa | Rorug01G0217000 |
| rosa_samantha | Rh1BG201500 Rh1CG215700 Rh1DG228900 |
| rosa_wichuraiana | Rw1G020110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 474 |
| AciI | CCGC | 2 cut(s) | 291, 474 |
| AcsI | RAATTY | 1 cut(s) | 554 |
| AcuI | CTGAAG | 2 cut(s) | 154, 361 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 127, 458, 503 |
| AluBI | AGCT | 4 cut(s) | 125, 174, 209, 381 |
| AluI | AGCT | 4 cut(s) | 125, 174, 209, 381 |
| Alw21I | GWGCWC | 1 cut(s) | 274 |
| Alw44I | GTGCAC | 1 cut(s) | 270 |
| ApaLI | GTGCAC | 1 cut(s) | 270 |
| ApeKI | GCWGC | 3 cut(s) | 206, 338, 413 |
| ApoI | RAATTY | 1 cut(s) | 554 |
| AseI | ATTAAT | 2 cut(s) | 233, 564 |
| BaeGI | GKGCMC | 1 cut(s) | 274 |
| BauI | CACGAG | 1 cut(s) | 6 |
| Bbv12I | GWGCWC | 1 cut(s) | 274 |
| BbvI | GCAGC | 3 cut(s) | 218, 325, 425 |
| BccI | CCATC | 1 cut(s) | 293 |
| BfaI | CTAG | 2 cut(s) | 95, 574 |
| BisI | GCNGC | 4 cut(s) | 207, 339, 414, 475 |
| BlsI | GCNGC | 4 cut(s) | 208, 340, 415, 476 |
| BmsI | GCATC | 2 cut(s) | 169, 376 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 354, 386 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 279, 309 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 127, 458, 503 |
| Bse118I | RCCGGY | 1 cut(s) | 496 |
| Bse3DI | GCAATG | 4 cut(s) | 30, 443, 532, 555 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 127, 458, 503 |
| BseMI | GCAATG | 4 cut(s) | 30, 443, 532, 555 |
| BseSI | GKGCMC | 1 cut(s) | 274 |
| BseXI | GCAGC | 3 cut(s) | 218, 325, 425 |
| BseYI | CCCAGC | 3 cut(s) | 99, 303, 503 |
| BsiHKAI | GWGCWC | 1 cut(s) | 274 |
| BsiSI | CCGG | 1 cut(s) | 497 |
| BslFI | GGGAC | 2 cut(s) | 116, 520 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 127, 458, 503 |
| BsmFI | GGGAC | 2 cut(s) | 116, 520 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| BspACI | CCGC | 2 cut(s) | 291, 474 |
| BsrBI | CCGCTC | 1 cut(s) | 474 |
| BsrDI | GCAATG | 4 cut(s) | 30, 443, 532, 555 |
| BsrFI | RCCGGY | 1 cut(s) | 496 |
| BssAI | RCCGGY | 1 cut(s) | 496 |
| BssMI | GATC | 1 cut(s) | 91 |
| BssSI | CACGAG | 1 cut(s) | 6 |
| Bst2BI | CACGAG | 1 cut(s) | 6 |
| BstC8I | GCNNGC | 1 cut(s) | 343 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstSLI | GKGCMC | 1 cut(s) | 274 |
| BstV1I | GCAGC | 3 cut(s) | 218, 325, 425 |
| Cac8I | GCNNGC | 1 cut(s) | 343 |
| Cfr10I | RCCGGY | 1 cut(s) | 496 |
| CviAII | CATG | 6 cut(s) | 58, 140, 149, 259, 328, 356 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 2 cut(s) | 154, 361 |
| FaeI | CATG | 6 cut(s) | 61, 143, 152, 262, 331, 359 |
| FaqI | GGGAC | 2 cut(s) | 116, 520 |
| FatI | CATG | 6 cut(s) | 57, 139, 148, 258, 327, 355 |
| Fnu4HI | GCNGC | 4 cut(s) | 207, 339, 414, 475 |
| Fsp4HI | GCNGC | 4 cut(s) | 207, 339, 414, 475 |
| FspBI | CTAG | 2 cut(s) | 95, 574 |
| GluI | GCNGC | 4 cut(s) | 207, 339, 414, 475 |
| GsaI | CCCAGC | 3 cut(s) | 103, 307, 507 |
| HapII | CCGG | 1 cut(s) | 497 |
| Hin1II | CATG | 6 cut(s) | 61, 143, 152, 262, 331, 359 |
| HindIII | AAGCTT | 1 cut(s) | 123 |
| HinfI | GANTC | 2 cut(s) | 9, 482 |
| HpaII | CCGG | 1 cut(s) | 497 |
| Hpy166II | GTNNAC | 1 cut(s) | 272 |
| Hpy188I | TCNGA | 5 cut(s) | 54, 86, 287, 362, 471 |
| Hpy8I | GTNNAC | 1 cut(s) | 272 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyCH4V | TGCA | 3 cut(s) | 182, 272, 389 |
| Hsp92II | CATG | 6 cut(s) | 61, 143, 152, 262, 331, 359 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| LpnPI | CCDG | 6 cut(s) | 50, 85, 289, 327, 489, 510 |
| Lsp1109I | GCAGC | 3 cut(s) | 218, 325, 425 |
| LweI | GCATC | 2 cut(s) | 169, 376 |
| MaeI | CTAG | 2 cut(s) | 95, 574 |
| MaeIII | GTNAC | 4 cut(s) | 10, 215, 422, 568 |
| MalI | GATC | 1 cut(s) | 93 |
| MbiI | CCGCTC | 1 cut(s) | 474 |
| MboI | GATC | 1 cut(s) | 91 |
| MboII | GAAGA | 5 cut(s) | 160, 329, 332, 367, 511 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 5 cut(s) | 115, 230, 234, 442, 554 |
| MlyI | GAGTC | 1 cut(s) | 18 |
| MmeI | TCCRAC | 4 cut(s) | 64, 133, 265, 340 |
| MnlI | CCTC | 1 cut(s) | 281 |
| MseI | TTAA | 4 cut(s) | 164, 233, 488, 564 |
| MspI | CCGG | 1 cut(s) | 497 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 6 cut(s) | 61, 143, 152, 262, 331, 359 |
| NmuCI | GTSAC | 3 cut(s) | 10, 215, 422 |
| PfeI | GAWTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 4 cut(s) | 208, 340, 415, 476 |
| PleI | GAGTC | 1 cut(s) | 17 |
| PpsI | GAGTC | 1 cut(s) | 17 |
| PshBI | ATTAAT | 2 cut(s) | 233, 564 |
| PspFI | CCCAGC | 3 cut(s) | 99, 303, 503 |
| SaqAI | TTAA | 4 cut(s) | 164, 233, 488, 564 |
| SatI | GCNGC | 4 cut(s) | 207, 339, 414, 475 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| SchI | GAGTC | 1 cut(s) | 18 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 7 cut(s) | 127, 176, 211, 222, 383, 429, 575 |
| SfaNI | GCATC | 2 cut(s) | 169, 376 |
| Sse9I | AATT | 5 cut(s) | 115, 230, 234, 442, 554 |
| SsiI | CCGC | 2 cut(s) | 291, 474 |
| SspI | AATATT | 1 cut(s) | 278 |
| SspMI | CTAG | 2 cut(s) | 95, 574 |
| TaqI | TCGA | 2 cut(s) | 297, 480 |
| TasI | AATT | 5 cut(s) | 115, 230, 234, 442, 554 |
| TauI | GCSGC | 1 cut(s) | 477 |
| TfiI | GAWTC | 1 cut(s) | 482 |
| Tru1I | TTAA | 4 cut(s) | 164, 233, 488, 564 |
| Tru9I | TTAA | 4 cut(s) | 164, 233, 488, 564 |
| TseFI | GTSAC | 3 cut(s) | 10, 215, 422 |
| TseI | GCWGC | 3 cut(s) | 206, 338, 413 |
| Tsp45I | GTSAC | 3 cut(s) | 10, 215, 422 |
| TspDTI | ATGAA | 3 cut(s) | 344, 516, 566 |
| TspGWI | ACGGA | 2 cut(s) | 31, 120 |
| VneI | GTGCAC | 1 cut(s) | 270 |
| VspI | ATTAAT | 2 cut(s) | 233, 564 |
| XapI | RAATTY | 1 cut(s) | 554 |
| XspI | CTAG | 2 cut(s) | 95, 574 |