Rroxscaffold_4G00303960

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018473
Physical Location & Seq
Forward (+)
24474368 .. 24477299
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303960.1

Sequence Viewer

Length: 531 bp
ATGGTGTTGAGTGCAGAATATTGGGTAGGAGACGATGATATTGGCTGGGGAACTTTTGGAGAAGATTACATGAGGTGGGCTGCTAGCAAAAATTTCCATGTCGGAGATGTTCTCATCTTCAGCTATGATGCAAAAATACACAATCTTGTTGTAGCTGCTAATAGTGACCTATATGAGCAATGTAATTACACTCCAAACTTGGGAGCGTATCAGAGCGGCTTCGACTCTTTAACTTTGCCGGATACCGTTACCACACCTCAAAACTGCTCCAAGAAACCAGCAAAGAAATCTAGGGTTGGAAATCGCAGGGGAAAGGTTGCGGCCTATCCGGCGGCGCCCCGACTTCAATTGTGGTTCCTTGCTGCATCGACGAGCAGCGGGTGTTGCTGGATGGGTTATTCGGGTCTCTCGGCCTCTATGTCTTGCTTTTTGTCGAAGATTTGGGCTGTGGATGACTCTTCTCTCTTCTCGTGCGACAACGGCGGGGTGGATGATGGGCAATGGGCGATCGACAACGGCGCAGGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

176

Amino Acids

19.1

Weight (kDa)

4.74

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 19 - 81 6.9e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccBSI CCGCTC 1 cut(s) 216
AciI CCGC 5 cut(s) 216, 320, 332, 378, 483
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 2 cut(s) 123, 155
AluI AGCT 2 cut(s) 123, 155
Alw26I GTCTC 2 cut(s) 24, 410
AoxI GGCC 2 cut(s) 321, 411
ApeKI GCWGC 4 cut(s) 80, 155, 362, 375
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 2 cut(s) 337, 521
AsuNHI GCTAGC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 469
BbvI GCAGC 4 cut(s) 67, 142, 349, 387
BccI CCATC 2 cut(s) 385, 488
BceAI ACGGC 1 cut(s) 496
BciVI GTATCC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 24, 410
BfaI CTAG 3 cut(s) 84, 291, 529
BfoI RGCGCY 1 cut(s) 338
BfuI GTATCC 1 cut(s) 235
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 7 cut(s) 81, 156, 217, 321, 333, 363, 376
BlsI GCNGC 7 cut(s) 82, 157, 218, 322, 334, 364, 377
BmiI GGNNCC 2 cut(s) 336, 356
BmsI GCATC 2 cut(s) 118, 374
BmtI GCTAGC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 96, 128
BsaHI GRCGYC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse3DI GCAATG 2 cut(s) 185, 506
BseGI GGATG 3 cut(s) 396, 457, 496
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 2 cut(s) 185, 506
BseXI GCAGC 4 cut(s) 67, 142, 349, 387
BseYI CCCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 323, 413
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 510
BsiSI CCGG 2 cut(s) 239, 329
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 2 cut(s) 24, 410
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 2 cut(s) 323, 413
Bso31I GGTCTC 1 cut(s) 410
Bsp143I GATC 1 cut(s) 507
BspACI CCGC 5 cut(s) 216, 320, 332, 378, 483
BspANI GGCC 2 cut(s) 323, 413
BspLI GGNNCC 2 cut(s) 336, 356
BspOI GCTAGC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 2 cut(s) 185, 506
BssMI GATC 1 cut(s) 507
BssNI GRCGYC 1 cut(s) 335
BssSI CACGAG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 463, 470
BstACI GRCGYC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 85, 523
BstF5I GGATG 3 cut(s) 396, 457, 496
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 337, 521
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 2 cut(s) 24, 410
BstMBI GATC 1 cut(s) 507
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 3 cut(s) 329, 384, 480
BstV1I GCAGC 4 cut(s) 67, 142, 349, 387
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 323, 413
BtsCI GGATG 3 cut(s) 396, 457, 496
Cac8I GCNNGC 2 cut(s) 85, 523
CfoI GCGC 2 cut(s) 337, 521
CviAII CATG 2 cut(s) 70, 98
CviJI RGCY 8 cut(s) 45, 80, 123, 155, 219, 323, 413, 446
CviKI_1 RGCY 8 cut(s) 45, 80, 123, 155, 219, 323, 413, 446
DinI GGCGCC 1 cut(s) 336
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 463, 470
EarI CTCTTC 2 cut(s) 463, 470
Eco31I GGTCTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 2 cut(s) 73, 101
FaiI YATR 6 cut(s) 71, 99, 126, 172, 174, 419
FatI CATG 2 cut(s) 69, 97
FauI CCCGC 2 cut(s) 371, 476
Fnu4HI GCNGC 7 cut(s) 81, 156, 217, 321, 333, 363, 376
FokI GGATG 3 cut(s) 403, 464, 503
Fsp4HI GCNGC 7 cut(s) 81, 156, 217, 321, 333, 363, 376
FspBI CTAG 3 cut(s) 84, 291, 529
GlaI GCGC 2 cut(s) 336, 520
GluI GCNGC 7 cut(s) 81, 156, 217, 321, 333, 363, 376
GsaI CCCAGC 1 cut(s) 49
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 2 cut(s) 323, 413
HapII CCGG 2 cut(s) 239, 329
HhaI GCGC 2 cut(s) 337, 521
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 2 cut(s) 73, 101
Hin6I GCGC 2 cut(s) 335, 519
HinP1I GCGC 2 cut(s) 335, 519
HinfI GANTC 2 cut(s) 224, 455
HpaII CCGG 2 cut(s) 239, 329
Hpy188I TCNGA 2 cut(s) 104, 213
Hpy99I CGWCG 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 14, 131, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 384, 480
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 2 cut(s) 73, 101
HspAI GCGC 2 cut(s) 335, 519
KasI GGCGCC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 507
LmnI GCTCC 2 cut(s) 203, 272
LpnPI CCDG 7 cut(s) 31, 252, 291, 292, 342, 373, 507
Lsp1109I GCAGC 4 cut(s) 67, 142, 349, 387
LweI GCATC 2 cut(s) 118, 374
MaeI CTAG 3 cut(s) 84, 291, 529
MaeIII GTNAC 2 cut(s) 164, 247
MalI GATC 1 cut(s) 509
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 507
MboII GAAGA 5 cut(s) 74, 109, 448, 450, 457
MfeI CAATTG 1 cut(s) 347
MluCI AATT 3 cut(s) 91, 184, 347
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 2 cut(s) 218, 449
MmeI TCCRAC 2 cut(s) 82, 277
MnlI CCTC 3 cut(s) 66, 267, 424
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 2 cut(s) 239, 329
MunI CAATTG 1 cut(s) 347
MwoI GCNNNNNNNGC 3 cut(s) 329, 384, 480
NarI GGCGCC 1 cut(s) 335
NdeII GATC 1 cut(s) 507
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 73, 101
NlaIV GGNNCC 2 cut(s) 336, 356
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PkrI GCNGC 7 cut(s) 82, 157, 218, 322, 334, 364, 377
Ple19I CGATCG 1 cut(s) 510
PleI GAGTC 2 cut(s) 218, 449
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 2 cut(s) 218, 449
PspFI CCCAGC 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 336, 356
PvuI CGATCG 1 cut(s) 510
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 7 cut(s) 81, 156, 217, 321, 333, 363, 376
Sau3AI GATC 1 cut(s) 507
SchI GAGTC 2 cut(s) 218, 449
SetI ASST 6 cut(s) 77, 125, 157, 171, 259, 318
SfaNI GCATC 2 cut(s) 118, 374
SfoI GGCGCC 1 cut(s) 336
Sse9I AATT 3 cut(s) 91, 184, 347
SsiI CCGC 5 cut(s) 216, 320, 332, 378, 483
SspDI GGCGCC 1 cut(s) 334
SspI AATATT 1 cut(s) 20
SspMI CTAG 3 cut(s) 84, 291, 529
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 4 cut(s) 222, 368, 434, 510
TasI AATT 3 cut(s) 91, 184, 347
TauI GCSGC 3 cut(s) 219, 323, 335
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 4 cut(s) 80, 155, 362, 375
Tsp45I GTSAC 1 cut(s) 164
XapI RAATTY 1 cut(s) 91
XspI CTAG 3 cut(s) 84, 291, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.