FvH4_7g12940

VIT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015687
Physical Location & Seq
Reverse (-)
11698486 .. 11700248
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12940.t1

Sequence Viewer

Length: 831 bp
ATGGCTGCAGAAGAGACCAACATCAGTACTAGTACTGCTACTGCTTGGCTACTTGATGAAGTAAACGATATTGAAGAAGATAGATCAGAAAGCTTTGATAATGGTGCTACTGGTAGTTCGAGACCAAAAGAGCCATGGAAAACAGAGTATGCAAAGAGCATTCTGTATGCTGGTCTCGATGCCATTGTCACTTGCTTCTCTCTAATCTCTTCCATCTCCGCCAGCCGTCTCACCTCTGCGGATGTGCTGGTTCTAGGATTTGCAAATCTGGTGGCGGATGGGATATCAATGGGAGTTGGAGATTTTTTGTCCAGCAGCATCGAAAAGGATGTTGCCACGAAAGAAATGACGGTGACAGAATGGGATGTCACAAATCACGGCGGCCTTGAGAAGATGGAGTTGCTCCAGAAGTATCAAGCACTTGGCATGGACGTTGATGATGCCGCCACGGTTGTGAGCATTTTTGCCAAGTACAAAGACATCTTGGTCCAGGAGAAGATGATGGCTCATGGAAGGCTACCACCGGAAGAAGCAGAAAAGCCATGGAAGAATGGCCTTGTAACATTCGTCGCCTTCCTTGTGTTTGGCTCTGCTCCTCTCCTCTCATTCATCGTCCTCATCCCATTTACAAACAATGACTTGGTTAAGTTTGCTGGTGCTTGTATCCTTTCCGCAGTTGCGCTTGCTCTTCTTGGGATTGCAAAGGCCAAGATTGCAGGCCAGAACTATGCTTTATCTGTGGCAGTGACTCTCTTCAATGGTGCCGCTGCTGCAGCTGCCGCTTATGTTGTTGGATGGACGCTGAAGAATATAGCTGGCCTAGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

277

Amino Acids

29.3

Weight (kDa)

4.59

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 53 - 265 2.8e-49 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 761
AciI CCGC 8 cut(s) 219, 239, 275, 381, 444, 672, 765, 780
AcuI CTGAAG 1 cut(s) 824
AfaI GTAC 3 cut(s) 28, 34, 473
AgsI TTSAA 2 cut(s) 74, 757
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 489
AleI CACNNNNGTG 1 cut(s) 452
AluBI AGCT 3 cut(s) 93, 776, 815
AluI AGCT 3 cut(s) 93, 776, 815
Alw26I GTCTC 4 cut(s) 8, 115, 179, 233
AoxI GGCC 5 cut(s) 382, 553, 705, 718, 817
ApeKI GCWGC 6 cut(s) 5, 315, 767, 770, 773, 776
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 223, 364
AvaII GGWCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 761
BbvI GCAGC 5 cut(s) 327, 754, 757, 763, 785
BccI CCATC 5 cut(s) 221, 272, 388, 496, 789
BceAI ACGGC 2 cut(s) 210, 394
BciT130I CCWGG 1 cut(s) 491
BciVI GTATCC 1 cut(s) 674
BcoDI GTCTC 4 cut(s) 8, 115, 179, 233
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 3 cut(s) 30, 254, 821
BfmI CTRYAG 2 cut(s) 6, 771
BfuI GTATCC 1 cut(s) 674
BmcAI AGTACT 2 cut(s) 28, 34
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 763
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 3 cut(s) 169, 327, 430
BpmI CTGGAG 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 407
BsaI GGTCTC 3 cut(s) 8, 115, 179
BsaJI CCNNGG 3 cut(s) 134, 447, 542
BsaWI WCCGGW 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 3 cut(s) 134, 447, 542
BseGI GGATG 6 cut(s) 247, 283, 334, 370, 618, 800
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 585, 590
BseXI GCAGC 5 cut(s) 327, 754, 757, 763, 785
BshFI GGCC 5 cut(s) 384, 555, 707, 720, 819
BshNI GGYRCC 1 cut(s) 761
BsiSI CCGG 1 cut(s) 524
BsmAI GTCTC 4 cut(s) 8, 115, 179, 233
BsmBI CGTCTC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 5 cut(s) 384, 555, 707, 720, 819
Bso31I GGTCTC 3 cut(s) 8, 115, 179
Bsp143I GATC 1 cut(s) 83
Bsp19I CCATGG 2 cut(s) 134, 542
BspACI CCGC 8 cut(s) 219, 239, 275, 381, 444, 672, 765, 780
BspANI GGCC 5 cut(s) 384, 555, 707, 720, 819
BspLI GGNNCC 1 cut(s) 763
BspMAI CTGCAG 2 cut(s) 10, 775
BspQI GCTCTTC 1 cut(s) 693
BspT107I GGYRCC 1 cut(s) 761
BspTNI GGTCTC 3 cut(s) 8, 115, 179
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 3 cut(s) 134, 447, 542
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 134, 542
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 2 cut(s) 352, 451
Bst6I CTCTTC 4 cut(s) 6, 214, 693, 758
BstC8I GCNNGC 4 cut(s) 223, 684, 718, 817
BstDSI CCRYGG 3 cut(s) 134, 447, 542
BstF5I GGATG 6 cut(s) 247, 283, 334, 370, 618, 800
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 4 cut(s) 8, 115, 179, 233
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 5 cut(s) 713, 770, 773, 776, 779
BstNI CCWGG 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 2 cut(s) 6, 771
BstV1I GCAGC 5 cut(s) 327, 754, 757, 763, 785
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 5 cut(s) 384, 555, 707, 720, 819
BtgI CCRYGG 3 cut(s) 134, 447, 542
BtsCI GGATG 6 cut(s) 247, 283, 334, 370, 618, 800
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 4 cut(s) 223, 684, 718, 817
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 1 cut(s) 808
Csp6I GTAC 3 cut(s) 27, 33, 472
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 4 cut(s) 135, 427, 509, 543
CviQI GTAC 3 cut(s) 27, 33, 472
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
DrdI GACNNNNNNGTC 1 cut(s) 485
DseDI GACNNNNNNGTC 1 cut(s) 485
Eam1104I CTCTTC 4 cut(s) 6, 214, 693, 758
EarI CTCTTC 4 cut(s) 6, 214, 693, 758
EciI GGCGGA 2 cut(s) 208, 290
Eco130I CCWWGG 2 cut(s) 134, 542
Eco31I GGTCTC 3 cut(s) 8, 115, 179
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 489
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 2 cut(s) 134, 542
ErhI CCWWGG 2 cut(s) 134, 542
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 4 cut(s) 138, 430, 512, 546
FaiI YATR 9 cut(s) 136, 150, 168, 428, 510, 544, 729, 786, 812
FatI CATG 4 cut(s) 134, 426, 508, 542
FokI GGATG 6 cut(s) 254, 290, 341, 377, 605, 807
FspBI CTAG 3 cut(s) 30, 254, 821
GlaI GCGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 5 cut(s) 384, 555, 707, 720, 819
HapII CCGG 1 cut(s) 524
HgaI GACGC 1 cut(s) 808
HhaI GCGC 1 cut(s) 682
Hin1II CATG 4 cut(s) 138, 430, 512, 546
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 1 cut(s) 748
HpaII CCGG 1 cut(s) 524
HphI GGTGA 2 cut(s) 223, 364
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 120, 176, 406
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 3 cut(s) 507, 583, 818
HpyCH4III ACNGT 2 cut(s) 352, 451
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 6 cut(s) 8, 152, 263, 701, 716, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 713, 770, 773, 776, 779
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 4 cut(s) 138, 430, 512, 546
HspAI GCGC 1 cut(s) 680
Kzo9I GATC 1 cut(s) 83
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 2 cut(s) 408, 598
Lsp1109I GCAGC 5 cut(s) 327, 754, 757, 763, 785
LweI GCATC 3 cut(s) 169, 327, 430
MaeI CTAG 3 cut(s) 30, 254, 821
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 5 cut(s) 187, 352, 367, 559, 745
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 2 cut(s) 277, 772
MnlI CCTC 4 cut(s) 244, 606, 611, 626
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 2 cut(s) 767, 776
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 5 cut(s) 713, 770, 773, 776, 779
NcoI CCATGG 2 cut(s) 134, 542
NdeII GATC 1 cut(s) 83
NlaIII CATG 4 cut(s) 138, 430, 512, 546
NlaIV GGNNCC 1 cut(s) 763
NmuCI GTSAC 4 cut(s) 187, 352, 367, 745
OliI CACNNNNGTG 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 489
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 763
PspPI GGNCC 1 cut(s) 487
PstI CTGCAG 2 cut(s) 10, 775
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 3 cut(s) 28, 34, 473
RsaNI GTAC 3 cut(s) 27, 33, 472
RseI CAYNNNNRTG 1 cut(s) 452
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 1 cut(s) 645
Sau3AI GATC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 487
ScaI AGTACT 2 cut(s) 28, 34
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 1 cut(s) 491
SetI ASST 6 cut(s) 95, 236, 435, 778, 817, 829
SfaNI GCATC 3 cut(s) 169, 327, 430
SfcI CTRYAG 2 cut(s) 6, 771
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SpeI ACTAGT 1 cut(s) 29
SsiI CCGC 8 cut(s) 219, 239, 275, 381, 444, 672, 765, 780
SspMI CTAG 3 cut(s) 30, 254, 821
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 2 cut(s) 134, 542
TaaI ACNGT 2 cut(s) 352, 451
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 119, 177, 321
TatI WGTACW 3 cut(s) 26, 32, 471
TauI GCSGC 4 cut(s) 384, 446, 767, 782
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 4 cut(s) 187, 352, 367, 745
TseI GCWGC 6 cut(s) 5, 315, 767, 770, 773, 776
Tsp45I GTSAC 4 cut(s) 187, 352, 367, 745
TspDTI ATGAA 2 cut(s) 72, 598
TspRI CASTG 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XspI CTAG 3 cut(s) 30, 254, 821
ZrmI AGTACT 2 cut(s) 28, 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.