Rroxscaffold_1G00063110

VIT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015687
Physical Location & Seq
Reverse (-)
85086079 .. 85086411
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063110.1

Sequence Viewer

Length: 333 bp
ATGATGGCTCATGGAAGGCTACCGCCAGAAGAAGCAGAAAAGCCATGGAAGAACGGCCTTGTAACATTTGCTGCCTTCCTTGTCTTTGGCACTGCTCCTCTCCTGTCTTTTATTGTCCTCATCCCATTTACGAACAGTGACTTGGTTAAGTTTGTTGGTGCTTGTATCCTCTCTGCGCTTGCACTCACGCTTCTTGGGATTGCAAAGGCCAAGATTGCAGGCCAGAACTATGCTTTCTCTGTGGTAGTGACTCTCTTCAATGGTGCTGCTGCCGCAGCTGCCGCTTATGCCGTTGGATGGACACTGAACAATATAGCTGGCCTAGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

110

Amino Acids

11.4

Weight (kDa)

7.89

Isoelectric Point (pI)

22.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 8 - 99 6.8e-19 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 273, 282
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 278, 317
AluI AGCT 2 cut(s) 278, 317
AoxI GGCC 4 cut(s) 55, 207, 220, 319
ApeKI GCWGC 5 cut(s) 71, 266, 269, 275, 278
AspLEI GCGC 1 cut(s) 178
BbvI GCAGC 5 cut(s) 58, 253, 256, 265, 287
BccI CCATC 2 cut(s) 291, 320
BceAI ACGGC 2 cut(s) 70, 275
BciVI GTATCC 1 cut(s) 176
BfaI CTAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 7 cut(s) 72, 267, 270, 273, 276, 279, 282
BlsI GCNGC 7 cut(s) 73, 268, 271, 274, 277, 280, 283
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 120, 302
BseLI CCNNNNNNNGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 5 cut(s) 58, 253, 256, 265, 287
BshFI GGCC 4 cut(s) 57, 209, 222, 321
BslI CCNNNNNNNGG 1 cut(s) 297
BsnI GGCC 4 cut(s) 57, 209, 222, 321
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 3 cut(s) 23, 273, 282
BspANI GGCC 4 cut(s) 57, 209, 222, 321
BssECI CCNNGG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 180, 220, 319
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 120, 302
BstHHI GCGC 1 cut(s) 178
BstMWI GCNNNNNNNGC 6 cut(s) 215, 272, 275, 278, 281, 287
BstV1I GCAGC 5 cut(s) 58, 253, 256, 265, 287
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 4 cut(s) 57, 209, 222, 321
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 120, 302
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 3 cut(s) 90, 142, 302
Cac8I GCNNGC 3 cut(s) 180, 220, 319
CfoI GCGC 1 cut(s) 178
CviAII CATG 2 cut(s) 11, 45
CviJI RGCY 9 cut(s) 8, 19, 43, 57, 209, 222, 278, 317, 321
CviKI_1 RGCY 9 cut(s) 8, 19, 43, 57, 209, 222, 278, 317, 321
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 14, 48
FaiI YATR 5 cut(s) 12, 46, 231, 288, 314
FatI CATG 2 cut(s) 10, 44
Fnu4HI GCNGC 7 cut(s) 72, 267, 270, 273, 276, 279, 282
FokI GGATG 2 cut(s) 107, 309
Fsp4HI GCNGC 7 cut(s) 72, 267, 270, 273, 276, 279, 282
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 177
GluI GCNGC 7 cut(s) 72, 267, 270, 273, 276, 279, 282
HaeIII GGCC 4 cut(s) 57, 209, 222, 321
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 14, 48
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 9, 85
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 182, 203, 218
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 272, 275, 278, 281, 287
Hsp92II CATG 2 cut(s) 14, 48
HspAI GCGC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 39, 116, 204, 236, 303
Lsp1109I GCAGC 5 cut(s) 58, 253, 256, 265, 287
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 3 cut(s) 61, 137, 247
MboII GAAGA 3 cut(s) 41, 61, 247
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 3 cut(s) 108, 128, 179
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 215, 272, 275, 278, 281, 287
NcoI CCATGG 1 cut(s) 44
NlaIII CATG 2 cut(s) 14, 48
NmuCI GTSAC 2 cut(s) 137, 247
PkrI GCNGC 7 cut(s) 73, 268, 271, 274, 277, 280, 283
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 7 cut(s) 72, 267, 270, 273, 276, 279, 282
SchI GAGTC 1 cut(s) 244
SetI ASST 2 cut(s) 280, 319
SsiI CCGC 3 cut(s) 23, 273, 282
SspMI CTAG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 137
TauI GCSGC 2 cut(s) 275, 284
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 3 cut(s) 97, 142, 309
TseFI GTSAC 2 cut(s) 137, 247
TseI GCWGC 5 cut(s) 71, 266, 269, 275, 278
Tsp45I GTSAC 2 cut(s) 137, 247
TspRI CASTG 3 cut(s) 97, 142, 309
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.