Prupe.2G153700_v2.0.a1

VIT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015687
Physical Location & Seq
Reverse (-)
20779290 .. 20781786
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G153700.1

Sequence Viewer

Length: 822 bp
ATGGCTGATGCAGCTTATAGCAGGCTAGTCGAAGGAGAGGAGATTATTATTGGTGCTGAAGAAACTAGCAACAATATTAATGGAGGTTATGTTAGCAAGAAGAGTGAGAGACCAAAAGAGCCATGGAAAGGGGAGTATGCTAAAAGCATTTTGTATGCCGGTCTTGATGCCATTGTCACTTGCTTCTCTCTCATTTCCTCTATCTCTGCTAGTCGTATTTCCTCTGTGGATGTATTGGTGCTTGGATTTGCAAACCTGGTGGCAGATGGGATATCAATGGGGTTTGGAGATTTTATGTCCAGCAGCAGTGAAAAGGCTGTCGCCGCCAAAGAACGGGCGGTGACCGAATGGGATGTCGCTAATCACAGTGGCCCTGAGGAGCTGGTGGAGTTGCTTCGGAGATATCAAGCACTTGGGATGGATATTAACGACGCGACTACGGTTGTGAGCATTTTTGCCAAATACAATAACATCTTGGTGCATGAGAAAATGATGGCTCATGGAATGCTGCCGCCCGATGAAGCAGAAAAGCCATGGAAGAATGGCCTGGTCACATTTGCAGCCTTCCTTGTGTTTGGCAGTGCTCCTCTCCTCTCCTTCATCATCCTCATCCCATTTACGAACGACGACTCGGTTAAGTTTGTTGGTGCTTGTATCTTGTCTGCGCTTGCCCTAGCTCTTCTCGGGGCTGCAAAGGCCAAGATTGCAGGCCAGAACTACGCATTTTCTGTGGCTGTTACTCTCTTCAATGGTGCCATTGCTGCAGCTGCTGCTTATGCCTTGGGGTGGGCACTTAAGAATATAGCTGGCCTAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

274

Amino Acids

28.98

Weight (kDa)

4.98

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 752
AccII CGCG 1 cut(s) 434
AciI CCGC 3 cut(s) 324, 338, 512
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 128, 333, 786
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 1 cut(s) 748
AjnI CCWGG 2 cut(s) 255, 546
AluBI AGCT 5 cut(s) 14, 382, 677, 767, 806
AluI AGCT 5 cut(s) 14, 382, 677, 767, 806
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 103
AlwNI CAGNNNCTG 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 5 cut(s) 370, 544, 696, 709, 808
ApeKI GCWGC 9 cut(s) 11, 303, 508, 560, 689, 761, 764, 767, 770
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
AseI ATTAAT 1 cut(s) 78
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 683
AxyI CCTNAGG 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 793
BanI GGYRCC 1 cut(s) 752
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 9 cut(s) 23, 315, 495, 572, 676, 748, 754, 757, 776
BccI CCATC 3 cut(s) 260, 412, 487
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 2 cut(s) 257, 548
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 5 cut(s) 26, 66, 210, 674, 812
BfmI CTRYAG 1 cut(s) 762
BfrI CTTAAG 1 cut(s) 794
Bme1390I CCNGG 2 cut(s) 257, 548
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 754
BmrFI CCNGG 2 cut(s) 257, 548
BmsI GCATC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 122, 533, 780
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 333, 786
Bse118I RCCGGY 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 2 cut(s) 257, 548
BseDI CCNNGG 3 cut(s) 122, 533, 780
BseGI GGATG 5 cut(s) 235, 358, 423, 603, 609
BseLI CCNNNNNNNGG 3 cut(s) 128, 333, 786
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 4 cut(s) 53, 392, 576, 581
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 9 cut(s) 23, 315, 495, 572, 676, 748, 754, 757, 776
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 5 cut(s) 372, 546, 698, 711, 810
BshNI GGYRCC 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 128, 333, 786
BsmAI GTCTC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 5 cut(s) 372, 546, 698, 711, 810
Bso31I GGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 586, 793
Bsp19I CCATGG 2 cut(s) 122, 533
BspACI CCGC 3 cut(s) 324, 338, 512
BspANI GGCC 5 cut(s) 372, 546, 698, 711, 810
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 754
BspMAI CTGCAG 1 cut(s) 766
BspQI GCTCTTC 1 cut(s) 684
BspT107I GGYRCC 1 cut(s) 752
BspTI CTTAAG 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 122, 533, 780
BssT1I CCWWGG 3 cut(s) 122, 533, 780
Bst2UI CCWGG 2 cut(s) 257, 548
Bst4CI ACNGT 2 cut(s) 368, 442
Bst6I CTCTTC 3 cut(s) 95, 684, 749
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 4 cut(s) 23, 669, 709, 808
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 2 cut(s) 122, 533
BstEII GGTNACC 1 cut(s) 340
BstF5I GGATG 5 cut(s) 235, 358, 423, 603, 609
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 667
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 8 cut(s) 11, 323, 695, 704, 761, 767, 770, 776
BstNI CCWGG 2 cut(s) 257, 548
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 255, 546
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 793
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 9 cut(s) 23, 315, 495, 572, 676, 748, 754, 757, 776
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 5 cut(s) 372, 546, 698, 711, 810
BtgI CCRYGG 2 cut(s) 122, 533
BtsCI GGATG 5 cut(s) 235, 358, 423, 603, 609
BtsI GCAGTG 2 cut(s) 313, 586
BtsIMutI CAGTG 3 cut(s) 313, 373, 586
Cac8I GCNNGC 4 cut(s) 23, 669, 709, 808
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 440
CsiI ACCWGGT 1 cut(s) 255
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 4 cut(s) 123, 482, 500, 534
DdeI CTNAG 1 cut(s) 375
Eam1104I CTCTTC 3 cut(s) 95, 684, 749
EarI CTCTTC 3 cut(s) 95, 684, 749
Eco130I CCWWGG 3 cut(s) 122, 533, 780
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 2 cut(s) 273, 404
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 683
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 255, 546
EcoRV GATATC 2 cut(s) 273, 404
EcoT14I CCWWGG 3 cut(s) 122, 533, 780
ErhI CCWWGG 3 cut(s) 122, 533, 780
FaeI CATG 4 cut(s) 126, 485, 503, 537
FatI CATG 4 cut(s) 122, 481, 499, 533
FokI GGATG 5 cut(s) 242, 365, 430, 590, 596
FspBI CTAG 5 cut(s) 26, 66, 210, 674, 812
GlaI GCGC 1 cut(s) 666
HaeIII GGCC 5 cut(s) 372, 546, 698, 711, 810
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 667
Hin1II CATG 4 cut(s) 126, 485, 503, 537
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HinfI GANTC 1 cut(s) 629
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 1 cut(s) 164
Hpy99I CGWCG 2 cut(s) 434, 629
HpyAV CCTTC 3 cut(s) 26, 574, 607
HpyCH4III ACNGT 2 cut(s) 368, 442
HpyCH4V TGCA 7 cut(s) 11, 251, 481, 560, 692, 707, 764
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 323, 695, 704, 761, 767, 770, 776
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 4 cut(s) 126, 485, 503, 537
HspAI GCGC 1 cut(s) 665
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 2 cut(s) 379, 589
Lsp1109I GCAGC 9 cut(s) 23, 315, 495, 572, 676, 748, 754, 757, 776
LweI GCATC 1 cut(s) 157
MabI ACCWGGT 1 cut(s) 255
MaeI CTAG 5 cut(s) 26, 66, 210, 674, 812
MaeIII GTNAC 4 cut(s) 175, 340, 550, 736
MboII GAAGA 5 cut(s) 71, 112, 550, 671, 736
MhlI GDGCHC 2 cut(s) 586, 793
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 8 cut(s) 31, 77, 208, 232, 370, 597, 602, 617
MseI TTAA 4 cut(s) 78, 426, 636, 795
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 767
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 257, 548
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 2 cut(s) 257, 548
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 8 cut(s) 11, 323, 695, 704, 761, 767, 770, 776
NcoI CCATGG 2 cut(s) 122, 533
NlaIII CATG 4 cut(s) 126, 485, 503, 537
NlaIV GGNNCC 1 cut(s) 754
NmuCI GTSAC 3 cut(s) 175, 340, 550
PciSI GCTCTTC 1 cut(s) 684
PctI GAATGC 1 cut(s) 510
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 255, 546
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 2 cut(s) 255, 546
PspN4I GGNNCC 1 cut(s) 754
PspPI GGNCC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 4 cut(s) 78, 426, 636, 795
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 257, 548
SduI GDGCHC 2 cut(s) 586, 793
SetI ASST 7 cut(s) 16, 88, 258, 384, 679, 769, 808
SexAI ACCWGGT 1 cut(s) 255
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
SsiI CCGC 3 cut(s) 324, 338, 512
SspI AATATT 1 cut(s) 76
SspMI CTAG 5 cut(s) 26, 66, 210, 674, 812
StyD4I CCNGG 2 cut(s) 255, 546
StyI CCWWGG 3 cut(s) 122, 533, 780
TaaI ACNGT 2 cut(s) 368, 442
TaqI TCGA 1 cut(s) 30
TaqII GACCGA 1 cut(s) 359
TauI GCSGC 2 cut(s) 326, 514
Tru1I TTAA 4 cut(s) 78, 426, 636, 795
Tru9I TTAA 4 cut(s) 78, 426, 636, 795
TscAI CASTG 3 cut(s) 313, 373, 586
TseFI GTSAC 3 cut(s) 175, 340, 550
TseI GCWGC 9 cut(s) 11, 303, 508, 560, 689, 761, 764, 767, 770
Tsp45I GTSAC 3 cut(s) 175, 340, 550
TspDTI ATGAA 2 cut(s) 534, 589
TspRI CASTG 3 cut(s) 313, 373, 586
Vha464I CTTAAG 1 cut(s) 794
VspI ATTAAT 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XspI CTAG 5 cut(s) 26, 66, 210, 674, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.