Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8095796.1

Orthogroup ID

OG0015687

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 450

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8095796.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

gttgttagcattttggccaagtacaaagacatcttggtgcacgagaagatgatggctcatggaaggctaccgccagaagaagcagaaaagccatggaagaacggccttgtaacatttgctgccttccttgtctttggcactgctcctctcctgtcttttattgtcctcatcccatttacgaacagtgacttggttaagtttggtggtgcctgtatcctctctgcgcttgcactcacgcttcttgggattgcgaaggccaagattgcaggccagaaccatgctttccctgtggtagtgactctcttcactggtgctgccgccgcagctgccgcttatgccgttggatggacactgaacaatatagctggcctagaaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

126

Amino Acids

13.18

Weight (kDa)

8.83

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12940 FvH4_7g12940
prunus_persica	Prupe.2G153700_v2.0.a1 Prupe.2G153700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352071
rosa_laevigata	RLG00000028362
rosa_multiflora	Rmu_co8095796.1_g000001 Rmu_sc0002464.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063110 Rroxscaffold_4G00303320
rosa_rugosa	Rorug01G0223800
rosa_samantha	Rh1AG238400 Rh1BG208800 Rh1CG222800 Rh1DG235200
rosa_wichuraiana	Rw1G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AciI	CCGC	4 cut(s)	71, 318, 321, 330
AcoI	YGGCCR	1 cut(s)	15
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	2 cut(s)	326, 365
AluI	AGCT	2 cut(s)	326, 365
Alw21I	GWGCWC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	38
AoxI	GGCC	5 cut(s)	15, 103, 255, 268, 367
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	4 cut(s)	119, 314, 323, 326
AspLEI	GCGC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	106, 301, 313, 335
BccI	CCATC	2 cut(s)	46, 339
BceAI	ACGGC	2 cut(s)	118, 323
BciVI	GTATCC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	7 cut(s)	120, 315, 318, 321, 324, 327, 330
BlsI	GCNGC	7 cut(s)	121, 316, 319, 322, 325, 328, 331
BmiI	GGNNCC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	168, 350
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	4 cut(s)	106, 301, 313, 335
BshFI	GGCC	5 cut(s)	17, 105, 257, 270, 369
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	345
BsnI	GGCC	5 cut(s)	17, 105, 257, 270, 369
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	4 cut(s)	71, 318, 321, 330
BspANI	GGCC	5 cut(s)	17, 105, 257, 270, 369
BspLI	GGNNCC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	92
BssSI	CACGAG	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	228, 268, 367
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	168, 350
BstHHI	GCGC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 320, 323, 326, 329, 335
BstSLI	GKGCMC	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	106, 301, 313, 335
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	5 cut(s)	17, 105, 257, 270, 369
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	168, 350
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	4 cut(s)	138, 190, 306, 350
Cac8I	GCNNGC	3 cut(s)	228, 268, 367
CfoI	GCGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	3 cut(s)	59, 93, 278
CviQI	GTAC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	62, 96, 281
FaiI	YATR	5 cut(s)	60, 94, 279, 336, 362
FatI	CATG	3 cut(s)	58, 92, 277
Fnu4HI	GCNGC	7 cut(s)	120, 315, 318, 321, 324, 327, 330
FokI	GGATG	2 cut(s)	155, 357
Fsp4HI	GCNGC	7 cut(s)	120, 315, 318, 321, 324, 327, 330
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	7 cut(s)	120, 315, 318, 321, 324, 327, 330
HaeIII	GGCC	5 cut(s)	17, 105, 257, 270, 369
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	62, 96, 281
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	57, 133, 247, 368
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	40, 230, 266
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 320, 323, 326, 329, 335
Hsp92II	CATG	3 cut(s)	62, 96, 281
HspAI	GCGC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	8 cut(s)	87, 164, 223, 252, 284, 294, 300, 351
Lsp1109I	GCAGC	4 cut(s)	106, 301, 313, 335
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	109, 185, 295
MboII	GAAGA	4 cut(s)	58, 89, 109, 295
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	3 cut(s)	156, 176, 227
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	326
MwoI	GCNNNNNNNGC	6 cut(s)	263, 320, 323, 326, 329, 335
NcoI	CCATGG	1 cut(s)	92
NlaIII	CATG	3 cut(s)	62, 96, 281
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	185, 295
PkrI	GCNGC	7 cut(s)	121, 316, 319, 322, 325, 328, 331
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	7 cut(s)	120, 315, 318, 321, 324, 327, 330
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	3 cut(s)	328, 367, 379
SmiMI	CAYNNNNRTG	1 cut(s)	35
SsiI	CCGC	4 cut(s)	71, 318, 321, 330
SspMI	CTAG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	3 cut(s)	320, 323, 332
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	4 cut(s)	145, 190, 313, 357
TseFI	GTSAC	2 cut(s)	185, 295
TseI	GCWGC	4 cut(s)	119, 314, 323, 326
Tsp45I	GTSAC	2 cut(s)	185, 295
TspRI	CASTG	4 cut(s)	145, 190, 313, 357
VneI	GTGCAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.