Rw1G020710

VIT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015687
Physical Location & Seq
Reverse (-)
44364947 .. 44366517
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020710.1

Sequence Viewer

Length: 816 bp
ATGGCTGCAGAAGAGGCCAACTCCAGTACTAGGCTACTTGATCCAGTAGTAGTTGACGATATTGAAGAAGATAGAGAAAGCTTTGATAACGGTGCTACTAGTTCGAGACCAAAAGAGCCATGGAAAGGAGAGTATGCCAAGAGCATTCTGTATGCCGGTCTCGATGCCATTGTCACTTGCTTCTCTCTAATCTCTTCCATCTCCGCCAGCCGTCTAACTTCCGCGGATGTGCTGGTGCTAGGATTTGCAAATCTGGTGGCAGATGGGATATCTATGGGAGTTGGAGATTTTTTGTCCAGCAGCGGCGAAAAGGATGTTGCCGCCAAAGAAATGGCGGTGACGGAATGGGATGTCACAAATCACGGCGGCCTTGAGAAGATGGAGTTGCTCCAAAAGTATCAAGCACTTGGGATGGACGTTGATGATGCCGCCACGGTTGTTAGCATTTTGGCCAAGTACAAAGACATCTTGGTGCACGAGAAGATGATGGCTCATGGAAGGCTACCGCCAGAAGAAGCAGAAAAGCCATGGAAGAACGGCCTGGTAACATTTGCTGCCTTCCTTGTCTTTGGCACTGCTCCTCTCCTGTCTTTTATTGTCCTCATCCCATTTACGAACAGTGACTTGGTTAAGTTTGGTGGTGCCTGTATCCTCTCTGCGCTTGCACTCACGCTTCTTGGGATTGCGAAGGCCAAGATTGCAGGCCAGAACTATGCTTTCCCTGTGGTAATGACTCTCTTCACTGGTGCTGCCGCCGCAGCTGCCGCTTATGCCGTTGGATGGACACTGAACAATATAGCTGGCCTAGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

271

Amino Acids

28.66

Weight (kDa)

4.63

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 48 - 260 7.1e-49 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 641
AccII CGCG 1 cut(s) 224
AclWI GGATC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 450
AfaI GTAC 2 cut(s) 28, 458
AfiI CCNNNNNNNGG 3 cut(s) 30, 125, 780
AgsI TTSAA 1 cut(s) 65
AhlI ACTAGT 1 cut(s) 98
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 3 cut(s) 81, 761, 800
AluI AGCT 3 cut(s) 81, 761, 800
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 100, 164
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 1 cut(s) 35
AoxI GGCC 7 cut(s) 15, 367, 450, 538, 690, 703, 802
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 6 cut(s) 5, 300, 554, 749, 758, 761
AspLEI GCGC 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 477
BalI TGGCCA 1 cut(s) 452
BanI GGYRCC 1 cut(s) 641
BauI CACGAG 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 5 cut(s) 312, 541, 736, 748, 770
BccI CCATC 6 cut(s) 206, 257, 373, 406, 481, 774
BceAI ACGGC 4 cut(s) 195, 379, 553, 758
BciT130I CCWGG 1 cut(s) 542
BciVI GTATCC 1 cut(s) 659
BcoDI GTCTC 2 cut(s) 100, 164
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 4 cut(s) 30, 99, 239, 806
BfmI CTRYAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 659
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 154, 415
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 392
BsaI GGTCTC 2 cut(s) 100, 164
BsaJI CCNNGG 4 cut(s) 119, 222, 432, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 125, 780
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 24, 44, 748
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 4 cut(s) 119, 222, 432, 527
BseGI GGATG 6 cut(s) 232, 319, 355, 417, 603, 785
BseLI CCNNNNNNNGG 3 cut(s) 30, 125, 780
BseNI ACTGG 3 cut(s) 24, 44, 748
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 5 cut(s) 312, 541, 736, 748, 770
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 7 cut(s) 17, 369, 452, 540, 692, 705, 804
BshNI GGYRCC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 30, 125, 780
BsmAI GTCTC 2 cut(s) 100, 164
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 7 cut(s) 17, 369, 452, 540, 692, 705, 804
Bso31I GGTCTC 2 cut(s) 100, 164
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 2 cut(s) 119, 527
BspANI GGCC 7 cut(s) 17, 369, 452, 540, 692, 705, 804
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 643
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 641
BspTNI GGTCTC 2 cut(s) 100, 164
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 3 cut(s) 24, 44, 748
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 119, 222, 432, 527
BssMI GATC 1 cut(s) 40
BssSI CACGAG 1 cut(s) 476
BssT1I CCWWGG 2 cut(s) 119, 527
Bst2BI CACGAG 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 3 cut(s) 92, 436, 620
Bst6I CTCTTC 3 cut(s) 6, 199, 743
BstC8I GCNNGC 4 cut(s) 208, 663, 703, 802
BstDSI CCRYGG 4 cut(s) 119, 222, 432, 527
BstF5I GGATG 6 cut(s) 232, 319, 355, 417, 603, 785
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 2 cut(s) 100, 164
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 7 cut(s) 14, 698, 755, 758, 761, 764, 770
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 5 cut(s) 312, 541, 736, 748, 770
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 7 cut(s) 17, 369, 452, 540, 692, 705, 804
BtgI CCRYGG 4 cut(s) 119, 222, 432, 527
BtsCI GGATG 6 cut(s) 232, 319, 355, 417, 603, 785
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 4 cut(s) 573, 625, 741, 785
Cac8I GCNNGC 4 cut(s) 208, 663, 703, 802
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 155
Cfr42I CCGCGG 1 cut(s) 225
Csp6I GTAC 2 cut(s) 27, 457
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 3 cut(s) 120, 494, 528
CviQI GTAC 2 cut(s) 27, 457
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 6, 199, 743
EarI CTCTTC 3 cut(s) 6, 199, 743
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 119, 527
Eco31I GGTCTC 2 cut(s) 100, 164
Eco32I GATATC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 540
EcoRV GATATC 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 119, 527
ErhI CCWWGG 2 cut(s) 119, 527
FaeI CATG 3 cut(s) 123, 497, 531
FaiI YATR 9 cut(s) 121, 135, 153, 275, 495, 529, 714, 771, 797
FatI CATG 3 cut(s) 119, 493, 527
FokI GGATG 6 cut(s) 239, 326, 362, 424, 590, 792
FspBI CTAG 4 cut(s) 30, 99, 239, 806
GlaI GCGC 1 cut(s) 660
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 7 cut(s) 17, 369, 452, 540, 692, 705, 804
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 661
Hin1II CATG 3 cut(s) 123, 497, 531
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 1 cut(s) 733
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 55, 475
Hpy188III TCNNGA 2 cut(s) 105, 161
Hpy8I GTNNAC 2 cut(s) 55, 475
HpyAV CCTTC 4 cut(s) 492, 568, 682, 803
HpyCH4III ACNGT 3 cut(s) 92, 436, 620
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 5 cut(s) 8, 248, 475, 665, 701
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 698, 755, 758, 761, 764, 770
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 3 cut(s) 123, 497, 531
HspAI GCGC 1 cut(s) 659
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 393, 583
Lsp1109I GCAGC 5 cut(s) 312, 541, 736, 748, 770
LweI GCATC 2 cut(s) 154, 415
MaeI CTAG 4 cut(s) 30, 99, 239, 806
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 5 cut(s) 172, 337, 352, 544, 620
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 9 cut(s) 23, 77, 80, 186, 388, 493, 524, 544, 730
MhlI GDGCHC 1 cut(s) 477
MlsI TGGCCA 1 cut(s) 452
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 1 cut(s) 727
MmeI TCCRAC 2 cut(s) 262, 757
MnlI CCTC 4 cut(s) 7, 591, 611, 662
Mox20I TGGCCA 1 cut(s) 452
MscI TGGCCA 1 cut(s) 452
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 452
MspA1I CMGCKG 3 cut(s) 224, 303, 761
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 144
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 7 cut(s) 14, 698, 755, 758, 761, 764, 770
NcoI CCATGG 2 cut(s) 119, 527
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 123, 497, 531
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 4 cut(s) 172, 337, 352, 620
PctI GAATGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 643
PstI CTGCAG 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 2 cut(s) 28, 458
RsaNI GTAC 2 cut(s) 27, 457
RseI CAYNNNNRTG 1 cut(s) 470
SacII CCGCGG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 630
Sau3AI GATC 1 cut(s) 40
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 477
SetI ASST 5 cut(s) 83, 420, 763, 802, 814
SfaNI GCATC 2 cut(s) 154, 415
SfcI CTRYAG 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 225
SgrBI CCGCGG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 98
SspMI CTAG 4 cut(s) 30, 99, 239, 806
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 119, 527
TaaI ACNGT 3 cut(s) 92, 436, 620
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 104, 162
TatI WGTACW 2 cut(s) 26, 456
TauI GCSGC 7 cut(s) 306, 323, 369, 431, 755, 758, 767
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 4 cut(s) 580, 625, 748, 792
TseFI GTSAC 4 cut(s) 172, 337, 352, 620
TseI GCWGC 6 cut(s) 5, 300, 554, 749, 758, 761
Tsp45I GTSAC 4 cut(s) 172, 337, 352, 620
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 4 cut(s) 580, 625, 748, 792
VneI GTGCAC 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 4 cut(s) 30, 99, 239, 806
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.