Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002464.1

Orthogroup ID

OG0015687

Physical Location & Seq

Genomic Coordinates Reverse (-)

27325 .. 29342

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002464.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgaatcgctcacccagccacgctgccaccgccatcgtaggtaaaaatgaagttacggatgtgctggtgctaggatttgcaaatctggtggcagatgggatatctatgggagttggagattttttgtccagcagcggcgaaaaggatgttgccgccatagaaatggcagtgacggaatgggatgtcacaaatcacggcggccttgagaagatggagttgctccaaaagtatcaagcacttgggatggacgttgatgatgccgccacggttgttagcattttggccaagtacaaagacatcttggtgcacgagaagatgatggctcatggaaggctaccgccagaagaagcagaaaagccatggaagaacggccttgtaacatttgctgccttccttgtctttggcactgctcctctcctgtcttttattgtcctcatcccatttacgaacagtgacttggttaagtttggtggtgcctgtatcctctctgcgcttgcactcacgcttcttgggattgcgaaggccaagattgcaggccagaaatatgctttccctgtggtagtgactctcttcactggtgctgccgccgcagctgccgcttatgccgttggatggacactgaacaatatagctggcctagaaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

215

Amino Acids

22.52

Weight (kDa)

5.16

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12940 FvH4_7g12940
prunus_persica	Prupe.2G153700_v2.0.a1 Prupe.2G153700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352071
rosa_laevigata	RLG00000028362
rosa_multiflora	Rmu_co8095796.1_g000001 Rmu_sc0002464.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063110 Rroxscaffold_4G00303320
rosa_rugosa	Rorug01G0223800
rosa_samantha	Rh1AG238400 Rh1BG208800 Rh1CG222800 Rh1DG235200
rosa_wichuraiana	Rw1G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AciI	CCGC	9 cut(s)	30, 135, 153, 198, 261, 338, 585, 588, 597
AcoI	YGGCCR	1 cut(s)	282
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	612
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	593, 632
AluI	AGCT	2 cut(s)	593, 632
Alw21I	GWGCWC	1 cut(s)	309
Alw44I	GTGCAC	1 cut(s)	305
AoxI	GGCC	6 cut(s)	199, 282, 370, 522, 535, 634
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	6 cut(s)	23, 132, 386, 581, 590, 593
AspLEI	GCGC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	3
BaeGI	GKGCMC	1 cut(s)	309
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	473
BauI	CACGAG	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	6 cut(s)	10, 144, 373, 568, 580, 602
BccI	CCATC	6 cut(s)	41, 89, 205, 238, 313, 606
BceAI	ACGGC	3 cut(s)	211, 385, 590
BciVI	GTATCC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	71, 638
BfuI	GTATCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	264, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	264, 359
BseGI	GGATG	6 cut(s)	64, 151, 187, 249, 435, 617
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	6 cut(s)	10, 144, 373, 568, 580, 602
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	6 cut(s)	201, 284, 372, 524, 537, 636
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	612
BsnI	GGCC	6 cut(s)	201, 284, 372, 524, 537, 636
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	359
BspACI	CCGC	9 cut(s)	30, 135, 153, 198, 261, 338, 585, 588, 597
BspANI	GGCC	6 cut(s)	201, 284, 372, 524, 537, 636
BspLI	GGNNCC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	264, 359
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	268, 452
Bst6I	CTCTTC	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	495, 535, 634
BstDSI	CCRYGG	2 cut(s)	264, 359
BstF5I	GGATG	6 cut(s)	64, 151, 187, 249, 435, 617
BstHHI	GCGC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 29, 530, 587, 590, 593, 596, 602
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	6 cut(s)	10, 144, 373, 568, 580, 602
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	6 cut(s)	201, 284, 372, 524, 537, 636
BtgI	CCRYGG	2 cut(s)	264, 359
BtsCI	GGATG	6 cut(s)	64, 151, 187, 249, 435, 617
BtsI	GCAGTG	2 cut(s)	174, 405
BtsIMutI	CAGTG	5 cut(s)	174, 405, 457, 573, 617
Cac8I	GCNNGC	3 cut(s)	495, 535, 634
CfoI	GCGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	289
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	2 cut(s)	326, 360
CviQI	GTAC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	359
Eco32I	GATATC	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	2 cut(s)	329, 363
FaiI	YATR	7 cut(s)	107, 158, 327, 361, 546, 603, 629
FatI	CATG	2 cut(s)	325, 359
FokI	GGATG	6 cut(s)	71, 158, 194, 256, 422, 624
FspBI	CTAG	2 cut(s)	71, 638
GlaI	GCGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	6 cut(s)	201, 284, 372, 524, 537, 636
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	2 cut(s)	329, 363
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HinfI	GANTC	2 cut(s)	4, 565
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	4 cut(s)	324, 400, 514, 635
HpyCH4III	ACNGT	2 cut(s)	268, 452
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	80, 307, 497, 533
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 29, 530, 587, 590, 593, 596, 602
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	329, 363
HspAI	GCGC	1 cut(s)	491
LmnI	GCTCC	2 cut(s)	225, 415
Lsp1109I	GCAGC	6 cut(s)	10, 144, 373, 568, 580, 602
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	71, 638
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	6 cut(s)	52, 169, 184, 376, 452, 562
MboII	GAAGA	5 cut(s)	220, 325, 356, 376, 562
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	2 cut(s)	94, 589
MnlI	CCTC	3 cut(s)	423, 443, 494
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	2 cut(s)	161, 302
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	135, 593
MwoI	GCNNNNNNNGC	8 cut(s)	15, 29, 530, 587, 590, 593, 596, 602
NcoI	CCATGG	1 cut(s)	359
NlaIII	CATG	2 cut(s)	329, 363
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	4 cut(s)	169, 184, 452, 562
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	161, 302
SaqAI	TTAA	1 cut(s)	462
SchI	GAGTC	1 cut(s)	559
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	5 cut(s)	43, 252, 595, 634, 646
SfaNI	GCATC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	161, 302
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	9 cut(s)	30, 135, 153, 198, 261, 338, 585, 588, 597
SspMI	CTAG	2 cut(s)	71, 638
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	268, 452
TaiI	ACGT	1 cut(s)	252
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	7 cut(s)	138, 155, 201, 263, 587, 590, 599
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	5 cut(s)	174, 412, 457, 580, 624
TseFI	GTSAC	4 cut(s)	169, 184, 452, 562
TseI	GCWGC	6 cut(s)	23, 132, 386, 581, 590, 593
Tsp45I	GTSAC	4 cut(s)	169, 184, 452, 562
TspDTI	ATGAA	2 cut(s)	17, 63
TspGWI	ACGGA	2 cut(s)	71, 188
TspRI	CASTG	5 cut(s)	174, 412, 457, 580, 624
VneI	GTGCAC	1 cut(s)	305
XspI	CTAG	2 cut(s)	71, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.