FvH4_7g14860

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011716
Physical Location & Seq
Forward (+)
13023232 .. 13026503
3272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14860.t1

Sequence Viewer

Length: 807 bp
ATGAGTGTGATCGATTTGATCACGAGGGTCGATACGATATGCAAGAAATACGACAAGTACGACATCGATAAGCAAAAGGAACTCAATAATATCTCCGGGGACGATGCATTTGCTCATCTCTACAGCGTCGTTGAGGCCGACCTTGAAGCTGCTCTTCAGAAATCGGAGACTGCGGCAACTGAGAGGAGCAGGGCTTCTGCTGTTGCTATGAATGCGGAAATTCGACGAACCAAAGCTCGTTTGCTTCAGGAGCTACCAAAATTGAGAAGACTTGCTCCTAAAAAGGTGAAAGGTCTCTCAAGGGAAGACCTTGAAGCTCGGAGCGATCTGGTATCTGTACTACAAGAGAGGATAGAAGCAATTCCAGATGGATCAACTAGTGGAGCTAAACAAACTGGTGGTTTGACTGATCCAACTACCTCGTATGCAGGAATAAAAATTGATACAACTTCAGATGGGAAATTTGATAGTGAGTACCTCCAACATACTAAGGAGTCGGATCGCTTTAGAAATGAATATGAAATGCGAAGAATAAAACAGGATCAAGGTTTAGATGTTATAGCAGAAGGGTTAGACACATTGAAACATATGGCTGGTGACATGAATGAGGAAATAGATAGGCAAGTGCCTTTGATGGATGAAATAGATGATAAGGTTGAGAGGGCAAATGCTGACCTTAAGAATACTAATGTGAAACTCAAGGATACCATAGTCCAGCTGAGGTCCAGCCGGAACTTCTGCATCGACATCATCCTCCTGTGTCTAATTCTAGGAATCGCGGCTTATCTGTACAATGTGCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

269

Amino Acids

30.15

Weight (kDa)

5.34

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 211 - 260 8.6e-11 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 779
AciI CCGC 3 cut(s) 173, 215, 779
AclWI GGATC 4 cut(s) 379, 404, 507, 549
AcsI RAATTY 2 cut(s) 219, 461
AcuI CTGAAG 3 cut(s) 140, 230, 435
AfaI GTAC 4 cut(s) 59, 339, 476, 791
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 3 cut(s) 146, 314, 583
AhlI ACTAGT 1 cut(s) 377
AluBI AGCT 6 cut(s) 149, 236, 253, 317, 386, 718
AluI AGCT 6 cut(s) 149, 236, 253, 317, 386, 718
Alw26I GTCTC 2 cut(s) 161, 299
AlwI GGATC 4 cut(s) 379, 404, 507, 549
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 219, 461
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 723
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 298, 608
AvaII GGWCC 1 cut(s) 723
BaeI ACNNNNGTAYC 2 cut(s) 696, 729
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 2 cut(s) 274, 312
BbvCI CCTCAGC 1 cut(s) 719
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 362, 449, 628
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciVI GTATCC 1 cut(s) 697
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 161, 299
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 2 cut(s) 378, 770
BfmI CTRYAG 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 677
BfuI GTATCC 1 cut(s) 697
BisI GCNGC 3 cut(s) 150, 174, 780
BlsI GCNGC 3 cut(s) 151, 175, 781
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 723
BmgT120I GGNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 94, 750
BpiI GAAGAC 2 cut(s) 274, 312
Bpu10I CCTNAGC 1 cut(s) 719
BpuEI CTTGAG 2 cut(s) 283, 683
BpuMI CCSGG 1 cut(s) 97
Bsa29I ATCGAT 2 cut(s) 12, 66
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 400
BseCI ATCGAT 2 cut(s) 12, 66
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 643, 750
BseMII CTCAG 2 cut(s) 171, 710
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 1 cut(s) 137
BshVI ATCGAT 2 cut(s) 12, 66
BsiSI CCGG 2 cut(s) 96, 730
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 161, 299
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
BspACI CCGC 3 cut(s) 173, 215, 779
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 172, 711
BspDI ATCGAT 2 cut(s) 12, 66
BspFNI CGCG 1 cut(s) 779
BspPI GGATC 4 cut(s) 379, 404, 507, 549
BspQI GCTCTTC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
BssSI CACGAG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 677
BstAUI TGTACA 1 cut(s) 789
BstDEI CTNAG 3 cut(s) 180, 489, 719
BstF5I GGATG 2 cut(s) 643, 750
BstFNI CGCG 1 cut(s) 779
BstKTI GATC 7 cut(s) 12, 21, 328, 374, 412, 502, 544
BstMAI GTCTC 2 cut(s) 161, 299
BstMBI GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
BstMWI GCNNNNNNNGC 2 cut(s) 212, 250
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 121
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 2 cut(s) 274, 312
Bsu15I ATCGAT 2 cut(s) 12, 66
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 1 cut(s) 137
BsuTUI ATCGAT 2 cut(s) 12, 66
BtsCI GGATG 2 cut(s) 643, 750
Cfr13I GGNCC 1 cut(s) 723
ClaI ATCGAT 2 cut(s) 12, 66
CseI GACGC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 58, 338, 475, 790
CviAII CATG 1 cut(s) 601
CviQI GTAC 4 cut(s) 58, 338, 475, 790
DdeI CTNAG 3 cut(s) 180, 489, 719
DpnI GATC 7 cut(s) 11, 20, 327, 373, 411, 501, 543
DpnII GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 723
Eco57I CTGAAG 3 cut(s) 140, 230, 435
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 1 cut(s) 604
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 600
FauNDI CATATG 1 cut(s) 588
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 150, 174, 780
FokI GGATG 2 cut(s) 650, 737
Fsp4HI GCNGC 3 cut(s) 150, 174, 780
FspBI CTAG 2 cut(s) 378, 770
GluI GCNGC 3 cut(s) 150, 174, 780
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 96, 730
HgaI GACGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 604
HinfI GANTC 2 cut(s) 494, 774
HpaII CCGG 2 cut(s) 96, 730
HphI GGTGA 2 cut(s) 298, 608
Hpy188I TCNGA 5 cut(s) 159, 166, 321, 454, 499
Hpy188III TCNNGA 3 cut(s) 22, 248, 365
Hpy99I CGWCG 2 cut(s) 131, 228
HpyAV CCTTC 1 cut(s) 560
HpyCH4V TGCA 4 cut(s) 42, 107, 428, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 250
HpyF3I CTNAG 3 cut(s) 180, 489, 719
Hsp92II CATG 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 5 cut(s) 186, 250, 280, 321, 383
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 94, 750
MaeI CTAG 2 cut(s) 378, 770
MaeIII GTNAC 1 cut(s) 596
MalI GATC 7 cut(s) 11, 20, 327, 373, 411, 501, 543
MboI GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
MboII GAAGA 4 cut(s) 146, 279, 317, 540
MluCI AATT 6 cut(s) 219, 260, 360, 438, 461, 765
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 3 cut(s) 437, 477, 505
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 718
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 96, 730
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 2 cut(s) 212, 250
NciI CCSGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 588
NdeII GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
NlaIII CATG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 596
NsiI ATGCAT 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 135
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 774
PkrI GCNGC 3 cut(s) 151, 175, 781
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 723
PvuII CAGCTG 1 cut(s) 718
RsaI GTAC 4 cut(s) 59, 339, 476, 791
RsaNI GTAC 4 cut(s) 58, 338, 475, 790
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 3 cut(s) 150, 174, 780
Sau3AI GATC 7 cut(s) 9, 18, 325, 371, 409, 499, 541
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 97
SfaNI GCATC 2 cut(s) 94, 750
SfcI CTRYAG 1 cut(s) 121
SinI GGWCC 1 cut(s) 723
SmlI CTYRAG 3 cut(s) 298, 677, 698
SmoI CTYRAG 3 cut(s) 298, 677, 698
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 6 cut(s) 219, 260, 360, 438, 461, 765
SsiI CCGC 3 cut(s) 173, 215, 779
SspMI CTAG 2 cut(s) 378, 770
StyD4I CCNGG 1 cut(s) 95
TaqI TCGA 5 cut(s) 12, 30, 66, 223, 744
TasI AATT 6 cut(s) 219, 260, 360, 438, 461, 765
TatI WGTACW 2 cut(s) 337, 789
TauI GCSGC 2 cut(s) 176, 782
TfiI GAWTC 1 cut(s) 774
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 5 cut(s) 224, 528, 534, 617, 654
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 723
XapI RAATTY 2 cut(s) 219, 461
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 378, 770
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.