MD07G1133600.v1.1

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011716
Physical Location & Seq
Reverse (-)
19514035 .. 19521003
6969 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1133600.v1.1.491

Sequence Viewer

Length: 804 bp
ATGAGTGTGATCGATTTGATAACGAGGGTTGATGCAATATGCAAGAAATACGACAAGTACGACATAGATAAGCAAAAGGAGCTTAATAATATTTCTGGGGACGATGGTTTTGCTCGCCTATATGGGGCCGTTGAGGCCGACCTCGATGCTGCTCTCCAGAAATCAGAGATGGTATCAACGGAGAGGAACAGGGCTACTGCTGTTGCTATGAATGCTGAGATTCGACGAACCAAGGCTCGTTTGCTTGAAGAGCTCCCCAAATTGCGAAGACTTGCTCCTAAAAAGGTCAAAGGGCTTTCCAAAGAAGACCTTGAGGCTCGAAGCGAGTTAGTATTTGTACTAAAAGAGAGGATAGAAGGAATACCAGATGGATCAACGACTGCAGCTAAACAAACTGGTGGTTGGACAGATTCAGCTCCGTACGCTGGAATCAAAATTGACTCGAATTCAGATAGGAGATCTGATAATGAGTACTTTCAACAAACTGAGGAGTCGGATCGCTTTAGGCAGGAGTATGAAATGCGAAGAATGAAACAGGATCAAGGTCTAGATGTTATAGCAGAAGGATTGGACACATTGAAAAATATGGCCAGCGACATGAATGAGGAAATAGATAGACAAGTTCCCTTGATGGATGAAATAGATGATAAGGTTGACAGGGCAAATGCTGACCTTAAAAACACTAATGTGAGACTCAAGGATACCATAGTCAAGCTGAGGTCTAGCCGGAACTTTTGCATCGATATCACCCTCCTGATTCTGATTTTAGGAATCGCCGCCTATTTGTACAATGTCTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

268

Amino Acids

30.35

Weight (kDa)

5.2

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 210 - 259 1.1e-09 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 777
AclWI GGATC 3 cut(s) 379, 504, 546
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 1 cut(s) 445
AfaI GTAC 5 cut(s) 59, 339, 422, 473, 788
AfiI CCNNNNNNNGG 2 cut(s) 124, 425
AgsI TTSAA 4 cut(s) 248, 479, 580, 799
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 5 cut(s) 82, 253, 386, 416, 715
AluI AGCT 5 cut(s) 82, 253, 386, 416, 715
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 3 cut(s) 379, 504, 546
AoxI GGCC 3 cut(s) 126, 135, 588
ApeKI GCWGC 2 cut(s) 149, 383
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 739
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BalI TGGCCA 1 cut(s) 590
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 274, 312
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 2 cut(s) 136, 395
BccI CCATC 4 cut(s) 98, 163, 362, 625
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 128, 162
BciVI GTATCC 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 2 cut(s) 548, 723
BfmI CTRYAG 1 cut(s) 381
BfuI GTATCC 1 cut(s) 694
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 458
BisI GCNGC 3 cut(s) 150, 384, 777
BlsI GCNGC 3 cut(s) 151, 385, 778
BmcAI AGTACT 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 3 cut(s) 22, 136, 747
BpiI GAAGAC 2 cut(s) 274, 312
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 716
BpuEI CTTGAG 2 cut(s) 332, 680
Bsa29I ATCGAT 2 cut(s) 12, 741
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 425
Bse1I ACTGG 1 cut(s) 400
BseCI ATCGAT 2 cut(s) 12, 741
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 2 cut(s) 124, 425
BseMII CTCAG 3 cut(s) 207, 477, 707
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 2 cut(s) 136, 395
BshFI GGCC 3 cut(s) 128, 137, 590
BshVI ATCGAT 2 cut(s) 12, 741
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 727
BsiWI CGTACG 1 cut(s) 420
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 124, 425
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 3 cut(s) 128, 137, 590
Bsp1286I GDGCHC 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 5 cut(s) 9, 371, 458, 496, 538
BspACI CCGC 1 cut(s) 777
BspANI GGCC 3 cut(s) 128, 137, 590
BspCNI CTCAG 3 cut(s) 208, 478, 708
BspDI ATCGAT 2 cut(s) 12, 741
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 3 cut(s) 379, 504, 546
BspQI GCTCTTC 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 5 cut(s) 9, 371, 458, 496, 538
BssT1I CCWWGG 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 2 cut(s) 115, 592
BstDEI CTNAG 3 cut(s) 216, 486, 716
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 5 cut(s) 12, 374, 461, 499, 541
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 5 cut(s) 9, 371, 458, 496, 538
BstMWI GCNNNNNNNGC 5 cut(s) 79, 134, 212, 250, 422
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 136, 395
BstV2I GAAGAC 2 cut(s) 274, 312
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
Bsu15I ATCGAT 2 cut(s) 12, 741
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 3 cut(s) 128, 137, 590
BsuTUI ATCGAT 2 cut(s) 12, 741
BtsCI GGATG 1 cut(s) 640
Cac8I GCNNGC 2 cut(s) 115, 592
Cfr13I GGNCC 1 cut(s) 126
ClaI ATCGAT 2 cut(s) 12, 741
Csp6I GTAC 5 cut(s) 58, 338, 421, 472, 787
CviAII CATG 1 cut(s) 598
CviQI GTAC 5 cut(s) 58, 338, 421, 472, 787
DdeI CTNAG 3 cut(s) 216, 486, 716
DpnI GATC 5 cut(s) 11, 373, 460, 498, 540
DpnII GATC 5 cut(s) 9, 371, 458, 496, 538
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 445
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 601
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 597
Fnu4HI GCNGC 3 cut(s) 150, 384, 777
FokI GGATG 1 cut(s) 647
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 150, 384, 777
FspBI CTAG 2 cut(s) 548, 723
GluI GCNGC 3 cut(s) 150, 384, 777
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 3 cut(s) 128, 137, 590
HapII CCGG 1 cut(s) 727
Hin1II CATG 1 cut(s) 601
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 8 cut(s) 220, 410, 429, 440, 491, 693, 757, 771
HpaII CCGG 1 cut(s) 727
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 5 cut(s) 166, 451, 463, 496, 762
Hpy188III TCNNGA 4 cut(s) 157, 548, 754, 796
Hpy8I GTNNAC 1 cut(s) 655
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 350, 557
HpyCH4V TGCA 4 cut(s) 35, 42, 383, 738
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 134, 212, 250, 422
HpyF3I CTNAG 3 cut(s) 216, 486, 716
Hsp92II CATG 1 cut(s) 601
Kzo9I GATC 5 cut(s) 9, 371, 458, 496, 538
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 4 cut(s) 79, 258, 280, 421
Lsp1109I GCAGC 2 cut(s) 136, 395
LweI GCATC 3 cut(s) 22, 136, 747
MaeI CTAG 2 cut(s) 548, 723
MalI GATC 5 cut(s) 11, 373, 460, 498, 540
MboI GATC 5 cut(s) 9, 371, 458, 496, 538
MboII GAAGA 4 cut(s) 260, 279, 317, 537
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 3 cut(s) 260, 435, 445
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 3 cut(s) 434, 500, 687
MmeI TCCRAC 2 cut(s) 383, 474
Mox20I TGGCCA 1 cut(s) 590
MscI TGGCCA 1 cut(s) 590
MseI TTAA 2 cut(s) 84, 675
MslI CAYNNNNRTG 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 590
MspI CCGG 1 cut(s) 727
Mva1269I GAATGC 1 cut(s) 217
MwoI GCNNNNNNNGC 5 cut(s) 79, 134, 212, 250, 422
NdeII GATC 5 cut(s) 9, 371, 458, 496, 538
NlaIII CATG 1 cut(s) 601
NlaIV GGNNCC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 5 cut(s) 220, 410, 429, 757, 771
Pfl23II CGTACG 1 cut(s) 420
PkrI GCNGC 3 cut(s) 151, 385, 778
PleI GAGTC 3 cut(s) 434, 499, 687
PpsI GAGTC 3 cut(s) 434, 499, 687
Psp124BI GAGCTC 1 cut(s) 255
PspLI CGTACG 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 385
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 5 cut(s) 59, 339, 422, 473, 788
RsaNI GTAC 5 cut(s) 58, 338, 421, 472, 787
RseI CAYNNNNRTG 1 cut(s) 686
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 84, 675
SatI GCNGC 3 cut(s) 150, 384, 777
Sau3AI GATC 5 cut(s) 9, 371, 458, 496, 538
Sau96I GGNCC 1 cut(s) 126
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 3 cut(s) 434, 500, 687
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 3 cut(s) 22, 136, 747
SfcI CTRYAG 1 cut(s) 381
SfiI GGCCNNNNNGGCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 2 cut(s) 311, 695
SmoI CTYRAG 2 cut(s) 311, 695
Sse9I AATT 3 cut(s) 260, 435, 445
SsiI CCGC 1 cut(s) 777
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 548, 723
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 6 cut(s) 12, 144, 223, 319, 443, 741
TasI AATT 3 cut(s) 260, 435, 445
TatI WGTACW 3 cut(s) 337, 471, 786
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 5 cut(s) 220, 410, 429, 757, 771
Tru1I TTAA 2 cut(s) 84, 675
Tru9I TTAA 2 cut(s) 84, 675
TseI GCWGC 2 cut(s) 149, 383
TspDTI ATGAA 5 cut(s) 224, 531, 545, 614, 651
TspGWI ACGGA 2 cut(s) 194, 408
XapI RAATTY 1 cut(s) 445
XbaI TCTAGA 1 cut(s) 547
XspI CTAG 2 cut(s) 548, 723
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.