Rmu_sc0004814.1_g000002

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004814.1
OG0011716
Physical Location & Seq
Forward (+)
12915 .. 14806
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004814.1_g000002.1.cds

Sequence Viewer

Length: 798 bp
atgagtgtgatcgatttgatcacgagggttgatacgatatgtaagaaatacgagaagtacgacatcgataagcaaaaggacctcaacaatgtctctggcggcgacgcatttgcttgtctctacggcgtcgttgaggccgaccttgaagctgctcgtcagaaatcggagactgcggcaactgagaggagcagggcttctgctgttgctatgaatgcggaaattcgacgaaccaaggctcgattgcttgaggagctacccaaattgagaagacttgctcctaaaaaggtgaaagggctttcgagagaagatcttgaagctcggagcgatttggtttctgtactgcaagagaggatagaagcaatacctgatggatcaacaagtggagctaaacaagccagtggttggacagattcaacctcgtcgtatgcaggcattaaaattgactcaacttcagatgggagatttgatagtgagtacttccaacaaactgaggagtcggatcgctttagaaatgagtatgaaatgcgaagaatgaaacaggatcaaggtttagatgttatagcagaagggttggacacattaaaacatatggccggtgacatgaatgaggaaatagatagacaagtgcctttgatggatgaaatagatgataaggttgagagggcaaatgctgaccttaagaacaccaatgtgaaactcaaggataccataatccagcttaggtccagccggaacttctgcattgacattatactcctgtgtctaattttaggaatcgcggcttatctgtacaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

265

Amino Acids

29.86

Weight (kDa)

5.1

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 402
AccII CGCG 1 cut(s) 779
AciI CCGC 4 cut(s) 99, 173, 215, 779
AclWI GGATC 3 cut(s) 379, 507, 549
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 4 cut(s) 59, 339, 476, 791
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 3 cut(s) 146, 314, 414
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 5 cut(s) 149, 253, 317, 386, 718
AluI AGCT 5 cut(s) 149, 253, 317, 386, 718
Alw26I GTCTC 3 cut(s) 97, 122, 161
AlwI GGATC 3 cut(s) 379, 507, 549
AoxI GGCC 2 cut(s) 135, 591
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 79, 723
AsuHPI GGTGA 2 cut(s) 298, 608
AvaII GGWCC 2 cut(s) 79, 723
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 362, 449, 628
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciVI GTATCC 1 cut(s) 697
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 3 cut(s) 97, 122, 161
BfrI CTTAAG 1 cut(s) 677
BfuI GTATCC 1 cut(s) 697
BglII AGATCT 1 cut(s) 307
BisI GCNGC 4 cut(s) 100, 150, 174, 780
BlsI GCNGC 4 cut(s) 101, 151, 175, 781
BmcAI AGTACT 1 cut(s) 476
Bme18I GGWCC 2 cut(s) 79, 723
BmgT120I GGNCC 2 cut(s) 79, 723
BpiI GAAGAC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 719
BpuEI CTTGAG 2 cut(s) 266, 683
Bsa29I ATCGAT 2 cut(s) 12, 66
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 396
BseCI ATCGAT 2 cut(s) 12, 66
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 171, 480
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 3 cut(s) 199, 263, 506
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 2 cut(s) 137, 593
BshVI ATCGAT 2 cut(s) 12, 66
BsiSI CCGG 2 cut(s) 594, 730
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 97, 122, 161
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 137, 593
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 6 cut(s) 9, 18, 307, 371, 499, 541
BspACI CCGC 4 cut(s) 99, 173, 215, 779
BspANI GGCC 2 cut(s) 137, 593
BspCNI CTCAG 2 cut(s) 172, 481
BspDI ATCGAT 2 cut(s) 12, 66
BspFNI CGCG 1 cut(s) 779
BspPI GGATC 3 cut(s) 379, 507, 549
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 593
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 6 cut(s) 9, 18, 307, 371, 499, 541
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 677
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 3 cut(s) 180, 489, 719
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 1 cut(s) 779
BstKTI GATC 6 cut(s) 12, 21, 310, 374, 502, 544
BstMAI GTCTC 3 cut(s) 97, 122, 161
BstMBI GATC 6 cut(s) 9, 18, 307, 371, 499, 541
BstMWI GCNNNNNNNGC 3 cut(s) 212, 250, 392
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 2 cut(s) 12, 66
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 2 cut(s) 137, 593
BsuTUI ATCGAT 2 cut(s) 12, 66
BtsCI GGATG 1 cut(s) 643
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 79, 723
ClaI ATCGAT 2 cut(s) 12, 66
CseI GACGC 2 cut(s) 113, 115
Csp6I GTAC 4 cut(s) 58, 338, 475, 790
CviAII CATG 1 cut(s) 601
CviQI GTAC 4 cut(s) 58, 338, 475, 790
DdeI CTNAG 3 cut(s) 180, 489, 719
DpnI GATC 6 cut(s) 11, 20, 309, 373, 501, 543
DpnII GATC 6 cut(s) 9, 18, 307, 371, 499, 541
EaeI YGGCCR 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 79, 723
Eco57I CTGAAG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 604
FatI CATG 1 cut(s) 600
FauNDI CATATG 1 cut(s) 588
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 100, 150, 174, 780
FokI GGATG 1 cut(s) 650
Fsp4HI GCNGC 4 cut(s) 100, 150, 174, 780
GluI GCNGC 4 cut(s) 100, 150, 174, 780
HaeIII GGCC 2 cut(s) 137, 593
HapII CCGG 2 cut(s) 594, 730
HgaI GACGC 2 cut(s) 113, 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 604
HinfI GANTC 4 cut(s) 410, 443, 494, 774
HpaII CCGG 2 cut(s) 594, 730
HphI GGTGA 2 cut(s) 298, 608
Hpy188I TCNGA 5 cut(s) 159, 166, 321, 454, 499
Hpy188III TCNNGA 3 cut(s) 22, 300, 311
Hpy99I CGWCG 4 cut(s) 107, 131, 228, 424
HpyAV CCTTC 1 cut(s) 560
HpyCH4V TGCA 3 cut(s) 343, 428, 741
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 250, 392
HpyF3I CTNAG 3 cut(s) 180, 489, 719
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 6 cut(s) 9, 18, 307, 371, 499, 541
LmnI GCTCC 5 cut(s) 186, 250, 280, 321, 383
Lsp1109I GCAGC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 596
MalI GATC 6 cut(s) 11, 20, 309, 373, 501, 543
MboI GATC 6 cut(s) 9, 18, 307, 371, 499, 541
MboII GAAGA 3 cut(s) 279, 317, 540
MflI RGATCY 1 cut(s) 307
MluCI AATT 4 cut(s) 219, 260, 438, 765
MlyI GAGTC 2 cut(s) 437, 503
MmeI TCCRAC 4 cut(s) 383, 477, 505, 552
MseI TTAA 3 cut(s) 435, 581, 678
MslI CAYNNNNRTG 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 594, 730
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 3 cut(s) 212, 250, 392
NdeI CATATG 1 cut(s) 588
NdeII GATC 6 cut(s) 9, 18, 307, 371, 499, 541
NlaIII CATG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 596
OliI CACNNNNGTG 1 cut(s) 689
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 135
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 410, 774
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 4 cut(s) 101, 151, 175, 781
PleI GAGTC 2 cut(s) 437, 502
PpsI GAGTC 2 cut(s) 437, 502
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspPI GGNCC 2 cut(s) 79, 723
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 4 cut(s) 59, 339, 476, 791
RsaNI GTAC 4 cut(s) 58, 338, 475, 790
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 3 cut(s) 435, 581, 678
SatI GCNGC 4 cut(s) 100, 150, 174, 780
Sau3AI GATC 6 cut(s) 9, 18, 307, 371, 499, 541
Sau96I GGNCC 2 cut(s) 79, 723
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 2 cut(s) 437, 503
SinI GGWCC 2 cut(s) 79, 723
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 3 cut(s) 245, 677, 698
SmoI CTYRAG 3 cut(s) 245, 677, 698
Sse9I AATT 4 cut(s) 219, 260, 438, 765
SsiI CCGC 4 cut(s) 99, 173, 215, 779
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 5 cut(s) 12, 66, 223, 238, 299
TasI AATT 4 cut(s) 219, 260, 438, 765
TatI WGTACW 3 cut(s) 337, 474, 789
TauI GCSGC 3 cut(s) 102, 176, 782
TfiI GAWTC 2 cut(s) 410, 774
Tru1I TTAA 3 cut(s) 435, 581, 678
Tru9I TTAA 3 cut(s) 435, 581, 678
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 5 cut(s) 224, 534, 548, 617, 654
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 402
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 2 cut(s) 79, 723
XapI RAATTY 1 cut(s) 219
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.