Rh1BG233200

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011716
Physical Location & Seq
Forward (+)
35591581 .. 35593233
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG233200.1

Sequence Viewer

Length: 423 bp
ATGAGTGTGATCGATTTGATCACGAGGGTTGATACGATATGTAAGAAATACGAAAAGTACGACATCGATAAGCAAAAGGACCTCAACAATGTCTCTGGTGGCGACGCATTTGCTCGTCTCTACGGCGTCGTTGAGGCCGACCTTGAAGCTGCTCTTCAGAAATCGGAGACTGCGGCAACTGAGAGGAGCAGGGCTTCTGCGGTTGCTATGAATGCGGAAATTCAACGAACCAAGGCTCGATTGCTTGAGGAGCTACCCAAATTGAGAAGACTTGCTCCTAAAAAGGATCAAGGTTTAGATGTTATAGCAGAAGGGTTGGACACATTAAAACATATGGCCGGTGACATGAATGAGGAAATAGATAGACAAGAGCCTTTGATGGATGAAATAGATGATAAGGTTGAGCGCGCGGGCAAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

140

Amino Acids

15.67

Weight (kDa)

4.95

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 408, 410
AciI CCGC 4 cut(s) 173, 200, 215, 410
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 2 cut(s) 146, 224
AluBI AGCT 2 cut(s) 149, 253
AluI AGCT 2 cut(s) 149, 253
Alw26I GTCTC 3 cut(s) 97, 122, 161
AlwI GGATC 1 cut(s) 294
AoxI GGCC 2 cut(s) 135, 336
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 2 cut(s) 408, 410
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 3 cut(s) 97, 122, 161
BisI GCNGC 2 cut(s) 150, 174
BlsI GCNGC 2 cut(s) 151, 175
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 266
Bsa29I ATCGAT 2 cut(s) 12, 66
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 338
BseCI ATCGAT 2 cut(s) 12, 66
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 171
BsePI GCGCGC 1 cut(s) 406
BseRI GAGGAG 2 cut(s) 199, 263
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 408, 410
BshFI GGCC 2 cut(s) 137, 338
BshVI ATCGAT 2 cut(s) 12, 66
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 3 cut(s) 97, 122, 161
BsmBI CGTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 137, 338
Bsp143I GATC 3 cut(s) 9, 18, 286
BspACI CCGC 4 cut(s) 173, 200, 215, 410
BspANI GGCC 2 cut(s) 137, 338
BspCNI CTCAG 1 cut(s) 172
BspDI ATCGAT 2 cut(s) 12, 66
BspFNI CGCG 2 cut(s) 408, 410
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 231
BssHII GCGCGC 1 cut(s) 406
BssMI GATC 3 cut(s) 9, 18, 286
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 408, 412
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 2 cut(s) 408, 410
BstHHI GCGC 2 cut(s) 408, 410
BstKTI GATC 3 cut(s) 12, 21, 289
BstMAI GTCTC 3 cut(s) 97, 122, 161
BstMBI GATC 3 cut(s) 9, 18, 286
BstMWI GCNNNNNNNGC 2 cut(s) 212, 250
BstUI CGCG 2 cut(s) 408, 410
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 274
Bsu15I ATCGAT 2 cut(s) 12, 66
BsuRI GGCC 2 cut(s) 137, 338
BsuTUI ATCGAT 2 cut(s) 12, 66
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 408, 412
CfoI GCGC 2 cut(s) 408, 410
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 79
ClaI ATCGAT 2 cut(s) 12, 66
CseI GACGC 2 cut(s) 113, 115
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 346
CviJI RGCY 7 cut(s) 137, 149, 194, 236, 253, 338, 373
CviKI_1 RGCY 7 cut(s) 137, 149, 194, 236, 253, 338, 373
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 180
DpnI GATC 3 cut(s) 11, 20, 288
DpnII GATC 3 cut(s) 9, 18, 286
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 1 cut(s) 349
FaiI YATR 6 cut(s) 40, 209, 305, 333, 335, 347
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 403
FauNDI CATATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 150, 174
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 2 cut(s) 150, 174
GlaI GCGC 2 cut(s) 407, 409
GluI GCNGC 2 cut(s) 150, 174
HaeIII GGCC 2 cut(s) 137, 338
HapII CCGG 1 cut(s) 339
HgaI GACGC 2 cut(s) 113, 115
HhaI GCGC 2 cut(s) 408, 410
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 2 cut(s) 406, 408
HinP1I GCGC 2 cut(s) 406, 408
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 159, 166
Hpy188III TCNNGA 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 107, 131
HpyAV CCTTC 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 250
HpyF3I CTNAG 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 2 cut(s) 406, 408
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 9, 18, 286
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 3 cut(s) 186, 250, 280
LpnPI CCDG 3 cut(s) 81, 175, 352
Lsp1109I GCAGC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 341
MalI GATC 3 cut(s) 11, 20, 288
MboI GATC 3 cut(s) 9, 18, 286
MboII GAAGA 2 cut(s) 146, 279
MluCI AATT 2 cut(s) 219, 260
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 6 cut(s) 18, 92, 127, 177, 241, 346
MseI TTAA 1 cut(s) 326
MspI CCGG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 2 cut(s) 408, 410
MwoI GCNNNNNNNGC 2 cut(s) 212, 250
NdeI CATATG 1 cut(s) 333
NdeII GATC 3 cut(s) 9, 18, 286
NlaIII CATG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 341
PauI GCGCGC 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 135
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 151, 175
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PteI GCGCGC 1 cut(s) 406
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 2 cut(s) 150, 174
Sau3AI GATC 3 cut(s) 9, 18, 286
Sau96I GGNCC 1 cut(s) 79
SetI ASST 6 cut(s) 84, 144, 151, 255, 295, 402
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 219, 260
SsiI CCGC 4 cut(s) 173, 200, 215, 410
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 3 cut(s) 12, 66, 238
TasI AATT 2 cut(s) 219, 260
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 224, 362, 399
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.