Rorug01G0251400

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011716
Physical Location & Seq
Reverse (-)
35936627 .. 35936854
228 bp
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UTR
Exon/CDS
Intron
Rorug01G0251400.1

Sequence Viewer

Length: 228 bp
ATGTGCGGTTTATGTTCAGAAGGGTTCTCTATTGGCGCCAGAGCCATCTCAAGGATGCTGCAGTGCTGCACGACAATAAAAACGTTAGACATTCCATGCGCGTGCCAGCACGTGACGAAGATGGTCGAGCAGCTGGTTGACATGGACAAGGTGGTTAAGGTCATTAGATCCTGTGGTATCGATATTCCTCGTGGAATATTGAAGTGTGGAAGTAAGATTCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

75

Amino Acids

8.13

Weight (kDa)

8.71

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 19 - 65 1.1e-06 Probable lipid transfer
Tryp_alpha_amyl PF00234 20 - 64 2.8e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 101
AciI CCGC 1 cut(s) 6
AclI AACGTT 1 cut(s) 83
AclWI GGATC 1 cut(s) 162
AcvI CACGTG 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 58, 66, 130
AspLEI GCGC 2 cut(s) 38, 101
BanI GGYRCC 1 cut(s) 35
BauI CACGAG 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 112
BbvI GCAGC 3 cut(s) 45, 53, 142
BccI CCATC 2 cut(s) 53, 115
BfmI CTRYAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 3 cut(s) 59, 67, 131
BlsI GCNGC 3 cut(s) 60, 68, 132
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 180
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 45, 53, 142
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 51
Bsp143I GATC 1 cut(s) 167
BspACI CCGC 1 cut(s) 6
BspDI ATCGAT 1 cut(s) 180
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 35
BssMI GATC 1 cut(s) 167
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 103, 107
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 101
BstKTI GATC 1 cut(s) 170
BstMBI GATC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 45, 53, 142
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 180
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 103, 107
CfoI GCGC 2 cut(s) 38, 101
ClaI ATCGAT 1 cut(s) 180
CviAII CATG 2 cut(s) 96, 142
CviJI RGCY 2 cut(s) 44, 133
CviKI_1 RGCY 2 cut(s) 44, 133
DinI GGCGCC 1 cut(s) 37
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
Eco72I CACGTG 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaeI CATG 2 cut(s) 99, 145
FaiI YATR 3 cut(s) 13, 97, 143
FatI CATG 2 cut(s) 95, 141
Fnu4HI GCNGC 3 cut(s) 59, 67, 131
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 3 cut(s) 59, 67, 131
GlaI GCGC 2 cut(s) 37, 100
GluI GCNGC 3 cut(s) 59, 67, 131
HaeII RGCGCY 1 cut(s) 39
HhaI GCGC 2 cut(s) 38, 101
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 2 cut(s) 99, 145
Hin6I GCGC 2 cut(s) 36, 99
HinP1I GCGC 2 cut(s) 36, 99
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 14
HpyCH4IV ACGT 2 cut(s) 83, 111
HpyCH4V TGCA 2 cut(s) 61, 69
HpySE526I ACGT 2 cut(s) 83, 111
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 2 cut(s) 99, 145
HspAI GCGC 2 cut(s) 36, 99
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 167
LpnPI CCDG 4 cut(s) 52, 119, 119, 184
Lsp1109I GCAGC 3 cut(s) 45, 53, 142
LweI GCATC 1 cut(s) 45
MaeII ACGT 2 cut(s) 83, 111
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 1 cut(s) 130
MflI RGATCY 1 cut(s) 167
MluCI AATT 1 cut(s) 223
Mly113I GGCGCC 1 cut(s) 36
MnlI CCTC 1 cut(s) 198
MseI TTAA 2 cut(s) 156, 226
MslI CAYNNNNRTG 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 133
MvnI CGCG 1 cut(s) 101
NarI GGCGCC 1 cut(s) 36
NdeII GATC 1 cut(s) 167
NlaIII CATG 2 cut(s) 99, 145
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 3 cut(s) 60, 68, 132
PluTI GGCGCC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 112
PmlI CACGTG 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 112
Psp1406I AACGTT 1 cut(s) 83
PspCI CACGTG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 156, 226
SatI GCNGC 3 cut(s) 59, 67, 131
Sau3AI GATC 1 cut(s) 167
SetI ASST 5 cut(s) 86, 114, 135, 153, 162
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 59
SfoI GGCGCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 223
SsiI CCGC 1 cut(s) 6
SspDI GGCGCC 1 cut(s) 35
SspI AATATT 1 cut(s) 198
TaiI ACGT 2 cut(s) 86, 114
TaqI TCGA 2 cut(s) 126, 180
TasI AATT 1 cut(s) 223
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 156, 226
Tru9I TTAA 2 cut(s) 156, 226
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 58, 66, 130
Tsp45I GTSAC 1 cut(s) 112
TspRI CASTG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.