RLG00000028081

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011716
Physical Location & Seq
Reverse (-)
18408394 .. 18410550
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028081

Sequence Viewer

Length: 663 bp
ATGAGTGTGATCGATTTGATCACGAGGGTTGATACGATATGTAAGAAATACGAGAAGTACGACATCGATAAGCAAAAGGACCTCAACAATGTCTCTGGCGGCGACGCATTTGCTCGTCTCTACGGCGTCGTTGAGGCCGACCTTGAATCTGCTCTTCAGAAATCGGAGACTGCGGCAACTGAGAGGAGCAGGGCTTCTGCGGTTGCTATGAATGCGGAAATTCGACGAACCAAGGCTCGATTGCTTGAGGAGCTACCCAAATTGAGAAGACTTGCTCCTAAAAAGATGCTTAAACTTAAGGGCTGGAGTGTAAGCTCCTGCTGTAAAGTTTCATTTCATTGCTATACTTGGTTGGAAAACTGTGATTGGCTCTTGAAGTTTGGAATTGTTGGTCAGTTTCTCTCACATAATGTTATAGCTGAAGGGTTGGACACATTAAAACATATGGCTGGTGACATGAATGAGGAAATAGATAAGCAAGTGCCTTTGATGGATGAAATAGACGATAAGGTTGAGAGAGCAAATGCTGACCTTAAGAATACCAATGTGAAACTCAAGGATACCATAGTCCAGCTTAGGTCCAGCCGGAACTTCTGCATTGACATCATCCTCCTGTGTCTAATTTTAGGAATCGCGGCTTATCTGTACAATGCGTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

221

Amino Acids

24.89

Weight (kDa)

8.09

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 163 - 212 6.2e-11 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 635
AciI CCGC 5 cut(s) 99, 173, 200, 215, 635
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 2 cut(s) 140, 441
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 59, 647
AflII CTTAAG 2 cut(s) 296, 533
AgsI TTSAA 3 cut(s) 146, 376, 658
AluBI AGCT 4 cut(s) 253, 315, 419, 574
AluI AGCT 4 cut(s) 253, 315, 419, 574
Alw26I GTCTC 3 cut(s) 97, 122, 161
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 79, 579
AsuHPI GGTGA 1 cut(s) 464
AvaII GGWCC 2 cut(s) 79, 579
BaeI ACNNNNGTAYC 2 cut(s) 552, 585
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 274
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 3 cut(s) 97, 122, 161
BfrI CTTAAG 2 cut(s) 296, 533
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 3 cut(s) 100, 174, 636
BlsI GCNGC 3 cut(s) 101, 175, 637
Bme18I GGWCC 2 cut(s) 79, 579
BmgT120I GGNCC 2 cut(s) 79, 579
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 266, 539
Bsa29I ATCGAT 2 cut(s) 12, 66
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 337
BseCI ATCGAT 2 cut(s) 12, 66
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 499, 606
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 199, 263
Bsh1236I CGCG 1 cut(s) 635
BshFI GGCC 1 cut(s) 137
BshVI ATCGAT 2 cut(s) 12, 66
BsiSI CCGG 1 cut(s) 586
BsmAI GTCTC 3 cut(s) 97, 122, 161
BsmBI CGTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 2 cut(s) 9, 18
BspACI CCGC 5 cut(s) 99, 173, 200, 215, 635
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 172
BspDI ATCGAT 2 cut(s) 12, 66
BspFNI CGCG 1 cut(s) 635
BspQI GCTCTTC 1 cut(s) 159
BspTI CTTAAG 2 cut(s) 296, 533
BsrDI GCAATG 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 645
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 9, 18
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 2 cut(s) 296, 533
BstAUI TGTACA 1 cut(s) 645
BstDEI CTNAG 2 cut(s) 180, 575
BstF5I GGATG 2 cut(s) 499, 606
BstFNI CGCG 1 cut(s) 635
BstKTI GATC 2 cut(s) 12, 21
BstMAI GTCTC 3 cut(s) 97, 122, 161
BstMBI GATC 2 cut(s) 9, 18
BstMWI GCNNNNNNNGC 2 cut(s) 212, 250
BstUI CGCG 1 cut(s) 635
BstV2I GAAGAC 1 cut(s) 274
Bsu15I ATCGAT 2 cut(s) 12, 66
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 1 cut(s) 137
BsuTUI ATCGAT 2 cut(s) 12, 66
BtsCI GGATG 2 cut(s) 499, 606
Cfr13I GGNCC 2 cut(s) 79, 579
ClaI ATCGAT 2 cut(s) 12, 66
CseI GACGC 2 cut(s) 113, 115
Csp6I GTAC 2 cut(s) 58, 646
CviAII CATG 1 cut(s) 457
CviQI GTAC 2 cut(s) 58, 646
DdeI CTNAG 2 cut(s) 180, 575
DpnI GATC 2 cut(s) 11, 20
DpnII GATC 2 cut(s) 9, 18
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 79, 579
Eco57I CTGAAG 2 cut(s) 140, 441
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 1 cut(s) 460
FaiI YATR 9 cut(s) 40, 209, 345, 408, 416, 444, 446, 458, 566
FatI CATG 1 cut(s) 456
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 100, 174, 636
FokI GGATG 2 cut(s) 506, 593
Fsp4HI GCNGC 3 cut(s) 100, 174, 636
GluI GCNGC 3 cut(s) 100, 174, 636
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 586
HgaI GACGC 2 cut(s) 113, 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 460
HinfI GANTC 2 cut(s) 146, 630
HpaII CCGG 1 cut(s) 586
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 159, 166
Hpy188III TCNNGA 2 cut(s) 22, 373
Hpy99I CGWCG 3 cut(s) 107, 131, 228
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 1 cut(s) 597
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 250
HpyF3I CTNAG 2 cut(s) 180, 575
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 9, 18
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 4 cut(s) 186, 250, 280, 320
LpnPI CCDG 9 cut(s) 81, 175, 289, 331, 435, 584, 595, 599, 626
LweI GCATC 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 452
MalI GATC 2 cut(s) 11, 20
MboI GATC 2 cut(s) 9, 18
MboII GAAGA 2 cut(s) 146, 279
MluCI AATT 4 cut(s) 219, 260, 384, 621
MmeI TCCRAC 2 cut(s) 333, 408
MnlI CCTC 7 cut(s) 18, 92, 127, 177, 241, 457, 620
MseI TTAA 4 cut(s) 291, 297, 437, 534
MspCI CTTAAG 2 cut(s) 296, 533
MspI CCGG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 1 cut(s) 635
MwoI GCNNNNNNNGC 2 cut(s) 212, 250
NdeI CATATG 1 cut(s) 444
NdeII GATC 2 cut(s) 9, 18
NlaIII CATG 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 135
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 146, 630
PkrI GCNGC 3 cut(s) 101, 175, 637
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspPI GGNCC 2 cut(s) 79, 579
PspPPI RGGWCCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 59, 647
RsaNI GTAC 2 cut(s) 58, 646
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 4 cut(s) 291, 297, 437, 534
SatI GCNGC 3 cut(s) 100, 174, 636
Sau3AI GATC 2 cut(s) 9, 18
Sau96I GGNCC 2 cut(s) 79, 579
SetI ASST 9 cut(s) 84, 144, 255, 317, 421, 513, 534, 576, 581
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 2 cut(s) 79, 579
SmlI CTYRAG 4 cut(s) 245, 296, 533, 554
SmoI CTYRAG 4 cut(s) 245, 296, 533, 554
Sse9I AATT 4 cut(s) 219, 260, 384, 621
SsiI CCGC 5 cut(s) 99, 173, 200, 215, 635
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 4 cut(s) 12, 66, 223, 238
TasI AATT 4 cut(s) 219, 260, 384, 621
TatI WGTACW 1 cut(s) 645
TauI GCSGC 3 cut(s) 102, 176, 638
TfiI GAWTC 2 cut(s) 146, 630
Tru1I TTAA 4 cut(s) 291, 297, 437, 534
Tru9I TTAA 4 cut(s) 291, 297, 437, 534
TseFI GTSAC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 5 cut(s) 224, 321, 326, 473, 510
Vha464I CTTAAG 2 cut(s) 296, 533
VpaK11BI GGWCC 2 cut(s) 79, 579
XapI RAATTY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.