Prupe.2G173700_v2.0.a1

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011716
Physical Location & Seq
Forward (+)
22001560 .. 22004348
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G173700.1

Sequence Viewer

Length: 804 bp
ATGAGTATGATCGATTTGATCACGAGGGTTGATGCAATATGCAAGAAATACGACAAGTACGACATAGATAAGCAGAGGGAGCTCAACAATGTTTCTGGGGACGATGGATTTGCTCGTCTATACGGTGCAGTCCAGGCTGACCTCGAAACAGCTTTACAGAAATCGGAGATGGTATCAACCGAGAAGAACAGGGCTACTGCTGTTGCTATGAATGCCGAGATTCGACGGACAAAGGCTCGTTTGCTTGAGGAGCTCCCCAAACTGCGAAGACTTGCCCCTAAAAAGGTGAAAGGGCTTTCGAAAGAAGACCTTGTTGCTCGGAGCGATTTAGTTTCTGTACTGAAGGAGAGGATAGAATCAATACCAGATGGATCCACAAGTGGAGCTAAACAAACTGGTGGGTGGACAGATTCAGCCCCATACGCAGGAATCAAAATTGATTCGACTTCAGATGGGAGATATGATACTGAGTACTTTCAACACACTGAGGAGTCGGATCGCTTTAGGCAGGAGTTTGAAATGCGAAGAATGAAACAGGATCAAGGTTTAGATGTTATAGCAGAAGGATTGGACACATTGAAAAATATGGCCGGTGACTTGAATGAGGAAATAGATAGGCAAGTTCCCTTGATGGATGAAATTGATGATAAGGTTGACAGGGCAAATGCTGACCTTAAAAATACTAATGTGAGACTCAAGGATACCATAATCAAGCTGAGGTCCAGCCGGAACTTCTGCATCGACATCACCCTCCTGATTCTAATTTTAGGAATTGCAGCCTATTTGTACAATGTCTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

268

Amino Acids

30.22

Weight (kDa)

5.39

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 366, 379, 504, 546
AcoI YGGCCR 1 cut(s) 588
AcuI CTGAAG 2 cut(s) 362, 432
AfaI GTAC 4 cut(s) 59, 339, 473, 788
AfiI CCNNNNNNNGG 2 cut(s) 283, 425
AgsI TTSAA 5 cut(s) 479, 518, 580, 601, 799
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 5 cut(s) 82, 152, 253, 386, 715
AluI AGCT 5 cut(s) 82, 152, 253, 386, 715
Alw21I GWGCWC 2 cut(s) 84, 255
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 4 cut(s) 366, 379, 504, 546
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 776
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 720
AsuHPI GGTGA 3 cut(s) 298, 605, 739
AsuII TTCGAA 1 cut(s) 299
AvaII GGWCC 1 cut(s) 720
BamHI GGATCC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 84, 255
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 2 cut(s) 274, 312
Bbv12I GWGCWC 2 cut(s) 84, 255
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 1 cut(s) 788
BccI CCATC 5 cut(s) 98, 163, 362, 446, 625
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 1 cut(s) 694
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 685
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 1 cut(s) 777
BlsI GCNGC 1 cut(s) 778
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 22, 747
BpiI GAAGAC 2 cut(s) 274, 312
Bpu10I CCTNAGC 1 cut(s) 716
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 266, 680
Bsa29I ATCGAT 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 425
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 134
BseCI ATCGAT 1 cut(s) 12
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 2 cut(s) 283, 425
BseMII CTCAG 3 cut(s) 459, 477, 707
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 2 cut(s) 263, 503
BseXI GCAGC 1 cut(s) 788
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 590
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 84, 255
BsiSI CCGG 2 cut(s) 591, 727
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 283, 425
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 590
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 84, 255
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 5 cut(s) 9, 18, 371, 496, 538
BspANI GGCC 1 cut(s) 590
BspCNI CTCAG 3 cut(s) 460, 478, 708
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 4 cut(s) 366, 379, 504, 546
BspT104I TTCGAA 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 590
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 590
BssMI GATC 5 cut(s) 9, 18, 371, 496, 538
BssSI CACGAG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 786
BstBI TTCGAA 1 cut(s) 299
BstDEI CTNAG 3 cut(s) 468, 486, 716
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 5 cut(s) 12, 21, 374, 499, 541
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 5 cut(s) 9, 18, 371, 496, 538
BstMWI GCNNNNNNNGC 5 cut(s) 79, 134, 212, 250, 422
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 788
BstV2I GAAGAC 2 cut(s) 274, 312
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 12
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 1 cut(s) 590
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 1 cut(s) 720
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 4 cut(s) 58, 338, 472, 787
CviQI GTAC 4 cut(s) 58, 338, 472, 787
DdeI CTNAG 3 cut(s) 468, 486, 716
DpnI GATC 5 cut(s) 11, 20, 373, 498, 540
DpnII GATC 5 cut(s) 9, 18, 371, 496, 538
EaeI YGGCCR 1 cut(s) 588
Ecl136II GAGCTC 2 cut(s) 82, 253
Eco24I GRGCYC 2 cut(s) 84, 255
Eco47I GGWCC 1 cut(s) 720
Eco53kI GAGCTC 2 cut(s) 82, 253
Eco57I CTGAAG 2 cut(s) 362, 432
EcoICRI GAGCTC 2 cut(s) 82, 253
EcoRII CCWGG 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 84, 255
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 777
FokI GGATG 1 cut(s) 647
FriOI GRGCYC 2 cut(s) 84, 255
Fsp4HI GCNGC 1 cut(s) 777
GluI GCNGC 1 cut(s) 777
HaeIII GGCC 1 cut(s) 590
HapII CCGG 2 cut(s) 591, 727
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 8 cut(s) 220, 356, 410, 429, 440, 491, 693, 757
HpaII CCGG 2 cut(s) 591, 727
HphI GGTGA 3 cut(s) 298, 605, 739
Hpy166II GTNNAC 2 cut(s) 405, 655
Hpy188I TCNGA 4 cut(s) 166, 321, 451, 496
Hpy188III TCNNGA 3 cut(s) 22, 754, 796
Hpy8I GTNNAC 2 cut(s) 405, 655
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 337, 557
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 5 cut(s) 35, 42, 128, 738, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 134, 212, 250, 422
HpyF3I CTNAG 3 cut(s) 468, 486, 716
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 5 cut(s) 9, 18, 371, 496, 538
LmnI GCTCC 5 cut(s) 79, 250, 258, 321, 383
Lsp1109I GCAGC 1 cut(s) 788
LweI GCATC 2 cut(s) 22, 747
MaeIII GTNAC 1 cut(s) 593
MalI GATC 5 cut(s) 11, 20, 373, 498, 540
MboI GATC 5 cut(s) 9, 18, 371, 496, 538
MboII GAAGA 4 cut(s) 196, 279, 317, 537
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 2 cut(s) 84, 255
MluCI AATT 4 cut(s) 435, 639, 762, 771
MlyI GAGTC 2 cut(s) 500, 687
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 9 cut(s) 18, 69, 152, 241, 342, 481, 598, 711, 761
MseI TTAA 1 cut(s) 675
MspI CCGG 2 cut(s) 591, 727
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 79, 134, 212, 250, 422
NdeII GATC 5 cut(s) 9, 18, 371, 496, 538
NlaIV GGNNCC 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 593
NspV TTCGAA 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 6 cut(s) 220, 356, 410, 429, 440, 757
PkrI GCNGC 1 cut(s) 778
PleI GAGTC 2 cut(s) 499, 687
PpsI GAGTC 2 cut(s) 499, 687
Psp124BI GAGCTC 2 cut(s) 84, 255
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 720
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 4 cut(s) 59, 339, 473, 788
RsaNI GTAC 4 cut(s) 58, 338, 472, 787
SacI GAGCTC 2 cut(s) 84, 255
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 1 cut(s) 777
Sau3AI GATC 5 cut(s) 9, 18, 371, 496, 538
Sau96I GGNCC 1 cut(s) 720
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 2 cut(s) 500, 687
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 84, 255
SfaNI GCATC 2 cut(s) 22, 747
SfuI TTCGAA 1 cut(s) 299
SinI GGWCC 1 cut(s) 720
SmlI CTYRAG 2 cut(s) 245, 695
SmoI CTYRAG 2 cut(s) 245, 695
Sse9I AATT 4 cut(s) 435, 639, 762, 771
SstI GAGCTC 2 cut(s) 84, 255
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 6 cut(s) 12, 144, 223, 299, 443, 741
TasI AATT 4 cut(s) 435, 639, 762, 771
TatI WGTACW 3 cut(s) 337, 471, 786
TfiI GAWTC 6 cut(s) 220, 356, 410, 429, 440, 757
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 1 cut(s) 776
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 3 cut(s) 224, 545, 651
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.