Rh1AG265700

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011716
Physical Location & Seq
Forward (+)
49181553 .. 49184480
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG265700.1

Sequence Viewer

Length: 600 bp
ATGAATGCGGAAATTCGACGAACCAAGGCTCGATTGCTTGAGGAGCTACCCAAATTGAGAAGACTTGCTCCTAAAAAGGTGAAAGGGCTTTCGAGAGAAGATCTTGAAGCTCGGAGCGATTTGGTTTCTGTACTGCAAGAGAGGATAGAAGCAATACCTGATGGATCAACAAGTGGAGCTAAACAAGCCAGTGGTTGGACAGATTCAACCTCGTCGTATGCAGGCATTAAAATTGACTCAACTTCAGATGGGAGATTTGATAGTGAGTACTTCCAACAAACTGAGGAGTCGGATCGCTTTAGAAATGAGTATGAAATGCGAAGAATGAAACAGGATCAAGGTTTAGATGTTATAGCAGAAGGGTTGGACACATTAAAACATATGGCCGGTGACATGAATGAGGAAATAGATAGACAAGTGCCTTTGATGGATGAAATAGATGATAAGGTTGAGAGGGCAAATGCTGACCTTAAGAACACCAATGTGAAACTCAAGGATACCATAATCCAGCTTAGGTCCAGCCGGAATTTCTGCATTGACATCATACTCCTGTGTCTAATTTTAGGAATCGCGGCTTATCTGTACAATGTGTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

199

Amino Acids

22.66

Weight (kDa)

5.16

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 142 - 191 1.7e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 195
AccII CGCG 1 cut(s) 572
AciI CCGC 2 cut(s) 8, 572
AclWI GGATC 3 cut(s) 172, 300, 342
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 2 cut(s) 12, 526
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 3 cut(s) 132, 269, 584
AfiI CCNNNNNNNGG 1 cut(s) 195
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 3 cut(s) 107, 207, 595
AleI CACNNNNGTG 1 cut(s) 482
AluBI AGCT 4 cut(s) 46, 110, 179, 511
AluI AGCT 4 cut(s) 46, 110, 179, 511
AlwI GGATC 3 cut(s) 172, 300, 342
AoxI GGCC 1 cut(s) 384
ApoI RAATTY 2 cut(s) 12, 526
AspS9I GGNCC 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 91, 401
AvaII GGWCC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 67
BccI CCATC 3 cut(s) 155, 242, 421
BciVI GTATCC 1 cut(s) 490
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 490
BglII AGATCT 1 cut(s) 100
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
BmcAI AGTACT 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 2 cut(s) 59, 476
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 2 cut(s) 56, 299
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 387, 523
BslI CCNNNNNNNGG 1 cut(s) 195
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 386
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 4 cut(s) 100, 164, 292, 334
BspACI CCGC 2 cut(s) 8, 572
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 572
BspPI GGATC 3 cut(s) 172, 300, 342
BspTI CTTAAG 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 100, 164, 292, 334
BssT1I CCWWGG 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 470
BstAUI TGTACA 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 282, 512
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 1 cut(s) 572
BstKTI GATC 4 cut(s) 103, 167, 295, 337
BstMBI GATC 4 cut(s) 100, 164, 292, 334
BstMWI GCNNNNNNNGC 2 cut(s) 43, 185
BstUI CGCG 1 cut(s) 572
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 516
Csp6I GTAC 3 cut(s) 131, 268, 583
CviAII CATG 1 cut(s) 394
CviQI GTAC 3 cut(s) 131, 268, 583
DdeI CTNAG 2 cut(s) 282, 512
DpnI GATC 4 cut(s) 102, 166, 294, 336
DpnII GATC 4 cut(s) 100, 164, 292, 334
EaeI YGGCCR 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 397
FaiI YATR 8 cut(s) 219, 312, 353, 381, 383, 395, 503, 545
FatI CATG 1 cut(s) 393
FauNDI CATATG 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 573
GluI GCNGC 1 cut(s) 573
HaeIII GGCC 1 cut(s) 386
HapII CCGG 2 cut(s) 387, 523
Hin1II CATG 1 cut(s) 397
HinfI GANTC 4 cut(s) 203, 236, 287, 567
HpaII CCGG 2 cut(s) 387, 523
HphI GGTGA 2 cut(s) 91, 401
Hpy188I TCNGA 3 cut(s) 114, 247, 292
Hpy188III TCNNGA 2 cut(s) 93, 104
Hpy99I CGWCG 2 cut(s) 21, 217
HpyAV CCTTC 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 136, 221, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 185
HpyF3I CTNAG 2 cut(s) 282, 512
Hsp92II CATG 1 cut(s) 397
Kzo9I GATC 4 cut(s) 100, 164, 292, 334
LmnI GCTCC 4 cut(s) 43, 73, 114, 176
LpnPI CCDG 9 cut(s) 171, 202, 207, 317, 400, 521, 532, 536, 563
MaeIII GTNAC 1 cut(s) 389
MalI GATC 4 cut(s) 102, 166, 294, 336
MboI GATC 4 cut(s) 100, 164, 292, 334
MboII GAAGA 3 cut(s) 72, 110, 333
MflI RGATCY 1 cut(s) 100
MluCI AATT 5 cut(s) 12, 53, 231, 526, 558
MlyI GAGTC 2 cut(s) 230, 296
MmeI TCCRAC 4 cut(s) 176, 270, 298, 345
MnlI CCTC 6 cut(s) 34, 135, 220, 277, 394, 447
MseI TTAA 3 cut(s) 228, 374, 471
MslI CAYNNNNRTG 1 cut(s) 482
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 387, 523
Mva1269I GAATGC 1 cut(s) 10
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 43, 185
NdeI CATATG 1 cut(s) 381
NdeII GATC 4 cut(s) 100, 164, 292, 334
NlaIII CATG 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 389
OliI CACNNNNGTG 1 cut(s) 482
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 203, 567
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 2 cut(s) 230, 295
PpsI GAGTC 2 cut(s) 230, 295
PspPI GGNCC 1 cut(s) 516
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 3 cut(s) 132, 269, 584
RsaNI GTAC 3 cut(s) 131, 268, 583
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 3 cut(s) 228, 374, 471
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 4 cut(s) 100, 164, 292, 334
Sau96I GGNCC 1 cut(s) 516
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 2 cut(s) 230, 296
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 3 cut(s) 38, 470, 491
SmoI CTYRAG 3 cut(s) 38, 470, 491
Sse9I AATT 5 cut(s) 12, 53, 231, 526, 558
SsiI CCGC 2 cut(s) 8, 572
StyI CCWWGG 1 cut(s) 24
TaqI TCGA 3 cut(s) 16, 31, 92
TasI AATT 5 cut(s) 12, 53, 231, 526, 558
TatI WGTACW 3 cut(s) 130, 267, 582
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 2 cut(s) 203, 567
Tru1I TTAA 3 cut(s) 228, 374, 471
Tru9I TTAA 3 cut(s) 228, 374, 471
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 5 cut(s) 17, 327, 341, 410, 447
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 2 cut(s) 12, 526
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.