FvH4_7g17180

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016618
Physical Location & Seq
Reverse (-)
14662944 .. 14663528
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17180.t1

Sequence Viewer

Length: 585 bp
ATGGAAACATTCTCAAGCTCTGTCTCAACTCTCAAAGTCCCAAGCACCCTTCTTTTGACTCCATCTCGTGAAGTCCTCCACCATTTCAAGACCTCTCACAACACCCACAAACTTCCTCCTCAAACCCACCTCCACAAAGCCACCACCAACTCCAAAACCACCTCTTTCACCCAAAAGCCTCGAACTTTATCCACACCCTCATTCTCAATCCCCACCAAGACCCTTCTCTCATCTCCAAGTCTCCACAAGAACCCAGCTTCTGGGTATGCAGCTGCTCTTTTGGACATTGCTCAGTGCAACAGGACCCTTGATTTGGTCCACAGGGATGTCAAGAGGTTCTTGCAGTTGCTCCACAACAAGCAGGTTCAAGCTGTTTTGGAAAGCCCATTTGTGGGGTTGGAGGAGAAGGGCCAAGTGATGAAGCTGGTGGCCCAGAAAGGGAAGTTCAACAAGGTCTTGGTGAATTTGGTGAAGATGTTGGTTGGGAAAAGCAAAGTTAGGATTGTGAAGGAAGTGTTGGAGGAGTTTGGGAGGATATATAGTGAGCTCTCTGGGGCTAATCAAGGATTGCTAAGAGGGATGTGA

Protein Analysis

195

Amino Acids

21.53

Weight (kDa)

10.21

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 87 - 185 1.7e-15 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00895
fragaria_vesca FvH4_7g17180
malus_domestica MD01G1085700.v1.1
prunus_persica Prupe.2G193500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360571
rosa_laevigata RLG00000027797
rosa_multiflora Rmu_sc0003481.1_g000003
rosa_roxburghii Rroxscaffold_4G00295990
rosa_rugosa Rorug01G0280000
rosa_samantha Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana Rw1G025850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 260
AcsI RAATTY 1 cut(s) 463
AfiI CCNNNNNNNGG 5 cut(s) 260, 313, 391, 392, 438
AgsI TTSAA 3 cut(s) 88, 368, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 6 cut(s) 18, 257, 272, 371, 424, 547
AluI AGCT 6 cut(s) 18, 257, 272, 371, 424, 547
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 2 cut(s) 28, 245
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 2 cut(s) 409, 429
ApeKI GCWGC 2 cut(s) 269, 272
ApoI RAATTY 1 cut(s) 463
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
AspS9I GGNCC 4 cut(s) 303, 316, 409, 430
AsuHPI GGTGA 3 cut(s) 160, 472, 481
AvaII GGWCC 2 cut(s) 303, 316
BanII GRGCYC 1 cut(s) 549
BauI CACGAG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 259, 281
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 28, 245
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 2 cut(s) 270, 273
BlsI GCNGC 2 cut(s) 271, 274
Bme18I GGWCC 2 cut(s) 303, 316
BmgT120I GGNCC 4 cut(s) 303, 316, 409, 430
BmiI GGNNCC 1 cut(s) 305
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 313, 391, 392, 438
Bse3DI GCAATG 1 cut(s) 285
BseGI GGATG 2 cut(s) 331, 585
BseLI CCNNNNNNNGG 5 cut(s) 260, 313, 391, 392, 438
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 3 cut(s) 108, 416, 536
BseXI GCAGC 2 cut(s) 259, 281
BseYI CCCAGC 1 cut(s) 253
BshFI GGCC 2 cut(s) 411, 431
BsiHKAI GWGCWC 1 cut(s) 549
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 5 cut(s) 260, 313, 391, 392, 438
BsmAI GTCTC 2 cut(s) 28, 245
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 411, 431
Bsp1286I GDGCHC 1 cut(s) 549
BspANI GGCC 2 cut(s) 411, 431
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 285
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 291, 572
BstF5I GGATG 2 cut(s) 331, 585
BstMAI GTCTC 2 cut(s) 28, 245
BstV1I GCAGC 2 cut(s) 259, 281
BsuRI GGCC 2 cut(s) 411, 431
BtsCI GGATG 2 cut(s) 331, 585
BtsIMutI CAGTG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 260
Cfr13I GGNCC 4 cut(s) 303, 316, 409, 430
DdeI CTNAG 2 cut(s) 291, 572
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 549
Eco47I GGWCC 2 cut(s) 303, 316
Eco53kI GAGCTC 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 549
FaiI YATR 3 cut(s) 267, 538, 540
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 270, 273
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 2 cut(s) 270, 273
GluI GCNGC 2 cut(s) 270, 273
GsaI CCCAGC 1 cut(s) 257
HaeIII GGCC 2 cut(s) 411, 431
HinfI GANTC 1 cut(s) 58
HphI GGTGA 3 cut(s) 160, 472, 481
Hpy166II GTNNAC 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 68, 88, 331
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 4 cut(s) 59, 233, 400, 502
HpyCH4V TGCA 3 cut(s) 269, 297, 343
HpyF3I CTNAG 2 cut(s) 291, 572
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 8 cut(s) 246, 267, 286, 307, 347, 410, 446, 537
Lsp1109I GCAGC 2 cut(s) 259, 281
MboII GAAGA 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 1 cut(s) 463
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 2 cut(s) 378, 498
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 2 cut(s) 271, 274
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 4 cut(s) 303, 316, 409, 430
PspPPI RGGWCCY 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 549
SatI GCNGC 2 cut(s) 270, 273
Sau96I GGNCC 4 cut(s) 303, 316, 409, 430
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 549
SinI GGWCC 2 cut(s) 303, 316
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 463
SstI GAGCTC 1 cut(s) 549
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 463
TscAI CASTG 1 cut(s) 299
TseI GCWGC 2 cut(s) 269, 272
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 303, 316
XapI RAATTY 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.