Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016618

Physical Location & Seq

Genomic Coordinates Reverse (-)

23197180 .. 23198905

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G193500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATACCCTGTCAAGCTCTGTCTCAACCCTCAAAGTCCCTACCCTTCTTTCATCAACATCATCTCGTGAGCTCCATCAATTCAATCCTCAAAGTCCCAGAACACACAAACTTCCTCCACAATCCCACCTTCACTCCACCACCAAACCCAACTTAATCTCCAACAAAACCCCCTCTTTCTCTCACAAGCTTGTCTCTTTATCTTCAACCCCCTCCTTCTTGAACTCCTCTGCAACCCTCTCTCTCAATTCTTCATCATCCTCTGATCTCCATAGAAAACCAGCAACTGGGTATGCCGCTGCTCTGCTAGACATAGCTCAATGCAACAGTTCTGTTCATTTGGTTGAGAAGGACATTCAGAGGTTCTTGAAATTGCTCCACAATAAGCAAGTCCAAGCTGCCTTGGCCAACCCTTTTGTGGGTGAGAAAGAAAAGGGCCAAGTAGTGAACTTGGTGGCAGAGAAAGGGAGATTCAATAGGCATTTGGTGGGTTTGGTGAAGATGCTGGTTAGGAAAAATAAGGTGGGGATTGTGAAAGAAGTGTTGGAGGAGTTCCAGAGGATTTACAGTGAGTTGTCTGGGACTGCTAAGAAGAGGTTCATGACCAGCATTCAGCTGGGTGTAGAATATGATGGTGGGTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

216

Amino Acids

23.74

Weight (kDa)

10.04

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00895
fragaria_vesca	FvH4_7g17180
malus_domestica	MD01G1085700.v1.1
prunus_persica	Prupe.2G193500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360571
rosa_laevigata	RLG00000027797
rosa_multiflora	Rmu_sc0003481.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295990
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana	Rw1G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	287
AciI	CCGC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	287, 418, 419
AgsI	TTSAA	5 cut(s)	85, 207, 223, 370, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	6 cut(s)	18, 73, 190, 317, 398, 616
AluI	AGCT	6 cut(s)	18, 73, 190, 317, 398, 616
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	28, 199
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	405, 436
ApeKI	GCWGC	2 cut(s)	299, 398
Asp700I	GAANNNNTTC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	434, 508
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	286, 385
BccI	CCATC	2 cut(s)	84, 626
BcoDI	GTCTC	2 cut(s)	28, 199
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	3 cut(s)	297, 300, 399
BlsI	GCNGC	3 cut(s)	298, 301, 400
BmgT120I	GGNCC	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	402
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 143, 149, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 418, 419
Bse1I	ACTGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	3 cut(s)	287, 418, 419
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	217, 563
BseXI	GCAGC	2 cut(s)	286, 385
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	2 cut(s)	407, 438
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	3 cut(s)	23, 81, 595
BslI	CCNNNNNNNGG	3 cut(s)	287, 418, 419
BsmAI	GTCTC	2 cut(s)	28, 199
BsmFI	GGGAC	3 cut(s)	23, 81, 595
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	407, 438
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	2 cut(s)	407, 438
BspHI	TCATGA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	329, 569
Bst6I	CTCTTC	1 cut(s)	587
BstDEI	CTNAG	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	28, 199
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	286, 385
BsuRI	GGCC	2 cut(s)	407, 438
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	574
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	436
CviAII	CATG	1 cut(s)	601
CviJI	RGCY	8 cut(s)	18, 73, 190, 317, 398, 407, 438, 616
CviKI_1	RGCY	8 cut(s)	18, 73, 190, 317, 398, 407, 438, 616
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	604
FaiI	YATR	5 cut(s)	273, 294, 314, 602, 630
FaqI	GGGAC	3 cut(s)	23, 81, 595
FatI	CATG	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	297, 300, 399
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	297, 300, 399
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	297, 300, 399
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	2 cut(s)	407, 438
Hin1II	CATG	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	471
HphI	GGTGA	2 cut(s)	434, 508
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	265, 360
Hpy188III	TCNNGA	5 cut(s)	68, 220, 367, 556, 601
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	4 cut(s)	56, 140, 226, 343
HpyCH4III	ACNGT	2 cut(s)	329, 569
HpyCH4V	TGCA	2 cut(s)	233, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	588
Hsp92II	CATG	1 cut(s)	604
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	78, 381
LpnPI	CCDG	9 cut(s)	23, 112, 273, 294, 491, 564, 569, 602, 619
Lsp1109I	GCAGC	2 cut(s)	286, 385
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	308
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	4 cut(s)	195, 243, 511, 604
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	3 cut(s)	80, 247, 371
MluNI	TGGCCA	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	186, 525
Mox20I	TGGCCA	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	2 cut(s)	299, 616
Mva1269I	GAATGC	1 cut(s)	609
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	604
PagI	TCATGA	1 cut(s)	600
PctI	GAATGC	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	471
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	298, 301, 400
Psp124BI	GAGCTC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	616
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	3 cut(s)	297, 300, 399
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	492
Sse9I	AATT	3 cut(s)	80, 247, 371
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	329, 569
TasI	AATT	3 cut(s)	80, 247, 371
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	471
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	2 cut(s)	299, 398
TspDTI	ATGAA	4 cut(s)	42, 243, 326, 589
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	2 cut(s)	415, 613
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.