Rw1G025850

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016618
Physical Location & Seq
Reverse (-)
52628044 .. 52628627
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025850.1

Sequence Viewer

Length: 555 bp
ATGGAAACATTCTCAAGCTCTGTCTCAACTCTCAAAGTCCCAAGCACCCTTCTTTCAACTCCATCTCGTGAACTACTCCACCATTTCAAGACCTCTCACAACACCCACAAACTTCCTCCACAAACCCACCTCCACAAAACCACCACCAAAACCACCTCTTTCACCCAAAAGCCTCTAACTTTATCCACACCCTCATTCTCAATCCCCACCAAAACCCTTTTCTCAACTCCAAATCTCCACAAAAACCCAGCTTCTGGTTATGCAGCTGCTCTTTTGGACATTGCTCAATGCAACAGGACCCTTGATTTGGTCCACAAGGATGTGAAGAGGTTCTTGCAATTGCTCCACAACCAGCAGGTTCAAGCTGTTTTGGAAAGCCCATTTGTGGCTGGTGGCCCAGAAAGGAAATTCAACAAGCACTTGGTGAATTTGGTGAAGATGTTGGTTGAGAAAAGTAGAGTGGGGATTGTGAAGGAAATGTTGGAGGAGTTTGGGAGGATTTGCAGTGAGCTCTCTGGGGCTAATCAAGGATTGCTAAGAGGGCTGTCAAGGTGA

Protein Analysis

184

Amino Acids

20.46

Weight (kDa)

10.01

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 85 - 173 1.3e-09 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00895
fragaria_vesca FvH4_7g17180
malus_domestica MD01G1085700.v1.1
prunus_persica Prupe.2G193500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360571
rosa_laevigata RLG00000027797
rosa_multiflora Rmu_sc0003481.1_g000003
rosa_roxburghii Rroxscaffold_4G00295990
rosa_rugosa Rorug01G0280000
rosa_samantha Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana Rw1G025850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 254
AcsI RAATTY 2 cut(s) 407, 427
AdeI CACNNNGTG 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 254, 307, 385
AgsI TTSAA 4 cut(s) 57, 88, 362, 412
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 464, 496
AluBI AGCT 5 cut(s) 18, 251, 266, 365, 511
AluI AGCT 5 cut(s) 18, 251, 266, 365, 511
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 263, 266
ApoI RAATTY 2 cut(s) 407, 427
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
Asp700I GAANNNNTTC 1 cut(s) 329
AspS9I GGNCC 3 cut(s) 297, 310, 395
AsuHPI GGTGA 3 cut(s) 154, 436, 445
AvaII GGWCC 2 cut(s) 297, 310
BanII GRGCYC 1 cut(s) 513
BauI CACGAG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 253, 275
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 264, 267
BlsI GCNGC 2 cut(s) 265, 268
Bme18I GGWCC 2 cut(s) 297, 310
BmgT120I GGNCC 3 cut(s) 297, 310, 395
BmiI GGNNCC 1 cut(s) 299
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 307, 385
Bse3DI GCAATG 1 cut(s) 279
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 3 cut(s) 254, 307, 385
BseMI GCAATG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 253, 275
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 513
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 254, 307, 385
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 513
BspANI GGCC 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 279
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 536
BstF5I GGATG 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 253, 275
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 511
BveI ACCTGC 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 297, 310, 395
DdeI CTNAG 1 cut(s) 536
DraIII CACNNNGTG 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 297, 310
Eco53kI GAGCTC 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 511
EcoO109I RGGNCCY 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 513
FaiI YATR 1 cut(s) 261
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 264, 267
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 2 cut(s) 264, 267
GluI GCNGC 2 cut(s) 264, 267
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 396
HphI GGTGA 3 cut(s) 154, 436, 445
Hpy166II GTNNAC 2 cut(s) 71, 313
Hpy188III TCNNGA 2 cut(s) 68, 88
Hpy8I GTNNAC 2 cut(s) 71, 313
HpyAV CCTTC 2 cut(s) 59, 466
HpyCH4V TGCA 4 cut(s) 263, 291, 337, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 1 cut(s) 536
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 8 cut(s) 240, 261, 280, 341, 365, 375, 411, 501
Lsp1109I GCAGC 2 cut(s) 253, 275
MboII GAAGA 2 cut(s) 337, 448
MfeI CAATTG 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 3 cut(s) 338, 407, 427
MmeI TCCRAC 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 266
MunI CAATTG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 541
NlaIV GGNNCC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 2 cut(s) 265, 268
PpuMI RGGWCCY 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 3 cut(s) 297, 310, 395
PspPPI RGGWCCY 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 513
SatI GCNGC 2 cut(s) 264, 267
Sau96I GGNCC 3 cut(s) 297, 310, 395
SduI GDGCHC 1 cut(s) 513
SinI GGWCC 2 cut(s) 297, 310
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 3 cut(s) 338, 407, 427
SstI GAGCTC 1 cut(s) 513
TasI AATT 3 cut(s) 338, 407, 427
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 263, 266
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 297, 310
XapI RAATTY 2 cut(s) 407, 427
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.