Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003481.1

Orthogroup ID

OG0016618

Physical Location & Seq

Genomic Coordinates Reverse (-)

8861 .. 9445

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003481.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggaaacattctcaagctctgtctcaactctcaaagtcccaagcacccttctttcaactccatctcgtgaactactccaccatttcaagacctctcacaacacccacaaacttcctccacaaacccacctccacaaaaccaccaccaaaaccacctctttcacccaaaagcctctaactttatccacaccctcattctcaatccccaccaaaacccttttctcaactccaaatctccacaaaaacccagcttctggttatgcagctgctcttttggacattgctcaatgcaacaggacccttgatttggtccacaaggatgtgaagaggttcttgcaattgctccacaacaagcaggttcaagctgttttggaaagcccatttgtgggtttggacgagaagggccaagtgatgaagctggtggcccagaaagggaaattcaacaagcacttggtgaatttggtgaagatgttggttgagaaaagtagagtggggattgtgaaggaaatgttggaggagtttgggaggatttgcagtgagctctctggggctaatcaaggattgctaagagggctgtcaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

194

Amino Acids

21.58

Weight (kDa)

10.01

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00895
fragaria_vesca	FvH4_7g17180
malus_domestica	MD01G1085700.v1.1
prunus_persica	Prupe.2G193500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360571
rosa_laevigata	RLG00000027797
rosa_multiflora	Rmu_sc0003481.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295990
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana	Rw1G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	437, 457
AdeI	CACNNNGTG	1 cut(s)	454
AfiI	CCNNNNNNNGG	5 cut(s)	254, 307, 385, 386, 432
AgsI	TTSAA	4 cut(s)	57, 88, 362, 442
AjuI	GAANNNNNNNTTGG	4 cut(s)	203, 235, 494, 526
AluBI	AGCT	6 cut(s)	18, 251, 266, 365, 418, 541
AluI	AGCT	6 cut(s)	18, 251, 266, 365, 418, 541
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	2 cut(s)	403, 423
ApeKI	GCWGC	2 cut(s)	263, 266
ApoI	RAATTY	2 cut(s)	437, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	297, 310, 403, 424
AsuHPI	GGTGA	3 cut(s)	154, 466, 475
AvaII	GGWCC	2 cut(s)	297, 310
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	2 cut(s)	253, 275
BccI	CCATC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
Bme18I	GGWCC	2 cut(s)	297, 310
BmgT120I	GGNCC	4 cut(s)	297, 310, 403, 424
BmiI	GGNNCC	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 307, 385, 386, 432
Bse3DI	GCAATG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	5 cut(s)	254, 307, 385, 386, 432
BseMI	GCAATG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	253, 275
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	405, 425
BsiHKAI	GWGCWC	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	5 cut(s)	254, 307, 385, 386, 432
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	405, 425
Bsp1286I	GDGCHC	1 cut(s)	543
BspANI	GGCC	2 cut(s)	405, 425
BspLI	GGNNCC	1 cut(s)	299
BspMI	ACCTGC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	253, 275
BsuRI	GGCC	2 cut(s)	405, 425
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	541
BveI	ACCTGC	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	4 cut(s)	297, 310, 403, 424
DdeI	CTNAG	1 cut(s)	566
DraIII	CACNNNGTG	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	297, 310
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	543
FaiI	YATR	1 cut(s)	261
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	2 cut(s)	264, 267
GluI	GCNGC	2 cut(s)	264, 267
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	405, 425
HphI	GGTGA	3 cut(s)	154, 466, 475
Hpy166II	GTNNAC	2 cut(s)	71, 313
Hpy188III	TCNNGA	2 cut(s)	68, 88
Hpy8I	GTNNAC	2 cut(s)	71, 313
HpyAV	CCTTC	3 cut(s)	59, 394, 496
HpyCH4V	TGCA	4 cut(s)	263, 291, 337, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	7 cut(s)	240, 261, 280, 341, 404, 440, 531
Lsp1109I	GCAGC	2 cut(s)	253, 275
MboII	GAAGA	2 cut(s)	337, 478
MfeI	CAATTG	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	3 cut(s)	338, 437, 457
MmeI	TCCRAC	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	571
NlaIV	GGNNCC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	265, 268
PpuMI	RGGWCCY	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	4 cut(s)	297, 310, 403, 424
PspPPI	RGGWCCY	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	543
SatI	GCNGC	2 cut(s)	264, 267
Sau96I	GGNCC	4 cut(s)	297, 310, 403, 424
SduI	GDGCHC	1 cut(s)	543
SinI	GGWCC	2 cut(s)	297, 310
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	338, 437, 457
SstI	GAGCTC	1 cut(s)	543
TasI	AATT	3 cut(s)	338, 437, 457
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	2 cut(s)	263, 266
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	297, 310
XapI	RAATTY	2 cut(s)	437, 457
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.