Rroxscaffold_4G00295990

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016618
Physical Location & Seq
Forward (+)
16080808 .. 16087574
6767 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00295990.1

Sequence Viewer

Length: 465 bp
ATGGAAACATTCTCAAGCTCTGTCTCAACTCTCAAAGTCCCAAGCACCCTTCTTTCAACTCCATCTCGTGAACTACTACTCCACCATTTCAAGACCTCTCACAACACCCACAAACTTCCTCCACAGACCCACCTCCACAAAACCACCACCAAAACCACCTCTTTCACCCAAAAGCCTCTAACCTTATCCACGCCCTCATTCTCAATCCCCACCAAAACCCTTTTCTCATCTCCAAATCTCCACAAAAACCCAGCTTCTGGTTATGCAGCTGCTCTTTTGGACATTGCTCAATGCAACAGGACCCTTGATTTGGTTCACAAGGATGTGAAGAGGTTCTTGCAGTTGCTCCACAACAAGCAGGTTCAAGCGGTTTTGGAAAGCCCATTTGTGGGTTTGGAGGAGAAGGGCCAAGTGATGAAGCTGGTTTTGGTTGAGCCGAATGTCACAATTTACTTCGAGAAGTAG

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

9.68

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 86 - 143 1e-06 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00895
fragaria_vesca FvH4_7g17180
malus_domestica MD01G1085700.v1.1
prunus_persica Prupe.2G193500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360571
rosa_laevigata RLG00000027797
rosa_multiflora Rmu_sc0003481.1_g000003
rosa_roxburghii Rroxscaffold_4G00295990
rosa_rugosa Rorug01G0280000
rosa_samantha Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana Rw1G025850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 257, 310, 388, 389
AgsI TTSAA 3 cut(s) 57, 91, 365
AjuI GAANNNNNNNTTGG 4 cut(s) 206, 238, 410, 442
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 4 cut(s) 18, 254, 269, 421
AluI AGCT 4 cut(s) 18, 254, 269, 421
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 266, 269
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 300, 406
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 300
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 2 cut(s) 256, 278
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 2 cut(s) 267, 270
BlsI GCNGC 2 cut(s) 268, 271
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 300, 406
BmiI GGNNCC 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 310, 388, 389
Bse3DI GCAATG 1 cut(s) 282
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 4 cut(s) 257, 310, 388, 389
BseMI GCAATG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 2 cut(s) 256, 278
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 408
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 257, 310, 388, 389
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 408
BspACI CCGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 282
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 256, 278
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 300, 406
CviJI RGCY 8 cut(s) 18, 175, 254, 269, 381, 408, 421, 436
CviKI_1 RGCY 8 cut(s) 18, 175, 254, 269, 381, 408, 421, 436
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 300
FaiI YATR 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 267, 270
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 267, 270
GluI GCNGC 2 cut(s) 267, 270
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 408
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 71, 316
Hpy188III TCNNGA 3 cut(s) 68, 91, 457
Hpy8I GTNNAC 2 cut(s) 71, 316
HpyAV CCTTC 2 cut(s) 59, 397
HpyCH4V TGCA 3 cut(s) 266, 294, 340
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 5 cut(s) 243, 264, 283, 344, 407
Lsp1109I GCAGC 2 cut(s) 256, 278
MaeIII GTNAC 1 cut(s) 442
MboII GAAGA 1 cut(s) 340
MluCI AATT 1 cut(s) 447
MnlI CCTC 8 cut(s) 106, 129, 143, 169, 186, 205, 324, 391
MroXI GAANNNNTTC 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 2 cut(s) 268, 271
PpuMI RGGWCCY 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 2 cut(s) 300, 406
PspPPI RGGWCCY 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 321
SatI GCNGC 2 cut(s) 267, 270
Sau96I GGNCC 2 cut(s) 300, 406
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 447
SsiI CCGC 1 cut(s) 368
TaqI TCGA 1 cut(s) 456
TasI AATT 1 cut(s) 447
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 266, 269
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 431
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.