MD01G1085700.v1.1

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016618
Physical Location & Seq
Reverse (-)
19232504 .. 19233148
645 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1085700.v1.1.491

Sequence Viewer

Length: 645 bp
ATGGATACCTTCTCAAGCTCTGTGTCAACCCTCAATGTCTCCACTATCCATTCCACCACATCGTCTCGCGAGCTCCACCACTTCAATCCTCAAAGTCCCAGAAAAACTCACAAACTCCCTCCGCAACCACAGCCGCCCAACCTCCTCCACAGCCTCCACTCCACCACCACCAAACCCAGCAGCTTCATCTCCACCAAGACCCCATCTTTTCTTCAAAAGCCTCCCCCTTTATCTTCCACCCCTTCGTTCTCCAACCCCATCCGCCTCTCCTCTCCGCCGTCTCCGAACCTCCACAGAAACCCGGCAGCTGGGTACGCGGCGGCTCTCCTGGACATATCCCAATGCTACAGTTCTGTTCATTTGGTGGAGCAGGACATCCGGAGGTTCTTAAAATTGCTCCACAACCGGCAGGTGGAAGCTGTTTTGGCCAATCCCTTAGTGGGTTTGGAAGAGAAGGGACAGGTGGTGAAGTTGGTGGCCGAGAAAGGCGGATTCAGCAAGCATTTGGTGGGCTTGGTGAAGATGTTGGTGGGGAAGAAGAAGGTGGGGATTGTGAGGGAAGTTTTGGAGGAGTTTCAGAGGATTTACAGTGACTTGTGTGGGGCTGTGAAGGTGAAGAAGGTGAGGAATTCCTTTGCTGTATGA

Protein Analysis

215

Amino Acids

23.54

Weight (kDa)

10.09

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 104 - 205 2.8e-13 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00895
fragaria_vesca FvH4_7g17180
malus_domestica MD01G1085700.v1.1
prunus_persica Prupe.2G193500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360571
rosa_laevigata RLG00000027797
rosa_multiflora Rmu_sc0003481.1_g000003
rosa_roxburghii Rroxscaffold_4G00295990
rosa_rugosa Rorug01G0280000
rosa_samantha Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana Rw1G025850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
AccII CGCG 2 cut(s) 69, 317
AccIII TCCGGA 1 cut(s) 378
AciI CCGC 7 cut(s) 122, 134, 262, 275, 317, 320, 489
AcoI YGGCCR 2 cut(s) 426, 477
AcsI RAATTY 1 cut(s) 628
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 308, 412, 440
AgsI TTSAA 2 cut(s) 85, 215
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 5 cut(s) 18, 73, 183, 308, 419
AluI AGCT 5 cut(s) 18, 73, 183, 308, 419
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 43, 69, 285
Aor13HI TCCGGA 1 cut(s) 378
AoxI GGCC 2 cut(s) 426, 477
ApeKI GCWGC 2 cut(s) 180, 305
ApoI RAATTY 1 cut(s) 628
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 4 cut(s) 478, 529, 625, 634
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 192, 317
BccI CCATC 2 cut(s) 211, 266
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 3 cut(s) 43, 69, 285
BfmI CTRYAG 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 5 cut(s) 134, 181, 306, 318, 321
BlsI GCNGC 5 cut(s) 135, 182, 307, 319, 322
Bme1390I CCNGG 2 cut(s) 302, 329
BmrFI CCNGG 2 cut(s) 302, 329
BpuMI CCSGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 412, 440
Bse118I RCCGGY 1 cut(s) 405
BseAI TCCGGA 1 cut(s) 378
BseBI CCWGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 258, 375
BseLI CCNNNNNNNGG 3 cut(s) 308, 412, 440
BseRI GAGGAG 3 cut(s) 134, 259, 584
BseXI GCAGC 2 cut(s) 192, 317
BseYI CCCAGC 2 cut(s) 176, 308
Bsh1236I CGCG 2 cut(s) 69, 317
BshFI GGCC 2 cut(s) 428, 479
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 3 cut(s) 302, 379, 406
BslFI GGGAC 2 cut(s) 81, 471
BslI CCNNNNNNNGG 3 cut(s) 308, 412, 440
BsmAI GTCTC 3 cut(s) 43, 69, 285
BsmBI CGTCTC 2 cut(s) 69, 285
BsmFI GGGAC 2 cut(s) 81, 471
BsnI GGCC 2 cut(s) 428, 479
Bsp1286I GDGCHC 1 cut(s) 75
Bsp13I TCCGGA 1 cut(s) 378
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 7 cut(s) 122, 134, 262, 275, 317, 320, 489
BspANI GGCC 2 cut(s) 428, 479
BspEI TCCGGA 1 cut(s) 378
BspFNI CGCG 2 cut(s) 69, 317
BspMI ACCTGC 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 350, 590
Bst6I CTCTTC 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 71, 500
BstDEI CTNAG 1 cut(s) 436
BstF5I GGATG 2 cut(s) 258, 375
BstFNI CGCG 2 cut(s) 69, 317
BstMAI GTCTC 3 cut(s) 43, 69, 285
BstMWI GCNNNNNNNGC 4 cut(s) 130, 314, 425, 495
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 300, 327
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 2 cut(s) 69, 317
BstV1I GCAGC 2 cut(s) 192, 317
BsuRI GGCC 2 cut(s) 428, 479
BtsCI GGATG 2 cut(s) 258, 375
BtsIMutI CAGTG 1 cut(s) 595
BtuMI TCGCGA 1 cut(s) 69
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 71, 500
Cfr10I RCCGGY 1 cut(s) 405
Csp6I GTAC 1 cut(s) 313
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 436
EaeI YGGCCR 2 cut(s) 426, 477
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 3 cut(s) 251, 264, 504
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 75
Esp3I CGTCTC 2 cut(s) 69, 285
FaiI YATR 2 cut(s) 335, 643
FaqI GGGAC 2 cut(s) 81, 471
Fnu4HI GCNGC 5 cut(s) 134, 181, 306, 318, 321
FokI GGATG 2 cut(s) 245, 362
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 5 cut(s) 134, 181, 306, 318, 321
GluI GCNGC 5 cut(s) 134, 181, 306, 318, 321
GsaI CCCAGC 2 cut(s) 180, 312
HaeIII GGCC 2 cut(s) 428, 479
HapII CCGG 3 cut(s) 302, 379, 406
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 492
HpaII CCGG 3 cut(s) 302, 379, 406
HphI GGTGA 4 cut(s) 478, 529, 625, 634
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 2 cut(s) 285, 579
Hpy188III TCNNGA 2 cut(s) 68, 379
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 6 cut(s) 19, 252, 448, 535, 604, 613
HpyCH4III ACNGT 2 cut(s) 350, 590
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 314, 425, 495
HpyF3I CTNAG 1 cut(s) 436
Kpn2I TCCGGA 1 cut(s) 378
LmnI GCTCC 3 cut(s) 78, 367, 402
Lsp1109I GCAGC 2 cut(s) 192, 317
MaeIII GTNAC 1 cut(s) 590
MboII GAAGA 7 cut(s) 203, 225, 461, 532, 547, 550, 628
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 2 cut(s) 392, 628
MluNI TGGCCA 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 276
Mox20I TGGCCA 1 cut(s) 428
MroI TCCGGA 1 cut(s) 378
MscI TGGCCA 1 cut(s) 428
MseI TTAA 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 3 cut(s) 302, 379, 406
MspR9I CCNGG 2 cut(s) 302, 329
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 2 cut(s) 69, 317
MwoI GCNNNNNNNGC 4 cut(s) 130, 314, 425, 495
NciI CCSGG 1 cut(s) 302
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 590
NruI TCGCGA 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 5 cut(s) 135, 182, 307, 319, 322
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 176, 308
PspGI CCWGG 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 308
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 5 cut(s) 134, 181, 306, 318, 321
ScrFI CCNGG 2 cut(s) 302, 329
SduI GDGCHC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 392, 628
SsiI CCGC 7 cut(s) 122, 134, 262, 275, 317, 320, 489
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 300, 327
TaaI ACNGT 2 cut(s) 350, 590
TasI AATT 2 cut(s) 392, 628
TauI GCSGC 3 cut(s) 136, 320, 323
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 2 cut(s) 180, 305
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 175, 347
TspRI CASTG 1 cut(s) 595
XapI RAATTY 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.