Rh1BG256800

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016618
Physical Location & Seq
Reverse (-)
38717770 .. 38719837
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG256800.1

Sequence Viewer

Length: 579 bp
ATGGAAACATTCTCAAGCTCTGTCTCAACTCTCAAAGTCCCAAGCACCCTTCTTTCAACTCCATCTCGTGAACTTCTCCAACATTTCAAGACCTCTCACAACACCCACAAACTTCCTCCACAAACCCACCTCCACAAAACCACCACCAAAACCACCTTTTTCACCCAAAAGCCTCTAACTTTATCCACACCCTCATTCTCATTCCCCACCAAAACCCTTTTCTCAACTCCAAATCTCCACAAAAACCCAGCTTCTGGTTATGCAGCTGCTCTTTTGGACATTGCTCAATGCAACAGGACCCTTGATTTGGTCCACAAGGATGTGAAGCGGTTCTTGCAATTGCTCCACAACAAGCAGGTTCAAGCTGTTTTGGAAAGCCCATTTGTGGGTTTGGAGGAGAAGGGCCAAGTGATGAAGCTGGTGGCCCAGAAAGGGAAATTCAACAAGCACTTGGTGAATTTGGTGAAGATGTTGGTTGAGAAAAGTAGAGTGGGGATTGTGAAGGAAATGTTGGAGGAGTTTGGGAGGATTTGCAGTGAGCTCTCTGGGGCTAATCAAGGATTGCTAAGAGGGCTGTGA

Protein Analysis

192

Amino Acids

21.43

Weight (kDa)

9.93

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 85 - 183 3e-17 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00895
fragaria_vesca FvH4_7g17180
malus_domestica MD01G1085700.v1.1
prunus_persica Prupe.2G193500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360571
rosa_laevigata RLG00000027797
rosa_multiflora Rmu_sc0003481.1_g000003
rosa_roxburghii Rroxscaffold_4G00295990
rosa_rugosa Rorug01G0280000
rosa_samantha Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana Rw1G025850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 437, 457
AdeI CACNNNGTG 1 cut(s) 454
AfiI CCNNNNNNNGG 5 cut(s) 254, 307, 385, 386, 432
AgsI TTSAA 4 cut(s) 57, 88, 362, 442
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 494, 526
AluBI AGCT 6 cut(s) 18, 251, 266, 365, 418, 541
AluI AGCT 6 cut(s) 18, 251, 266, 365, 418, 541
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 2 cut(s) 403, 423
ApeKI GCWGC 2 cut(s) 263, 266
ApoI RAATTY 2 cut(s) 437, 457
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
Asp700I GAANNNNTTC 1 cut(s) 329
AspS9I GGNCC 4 cut(s) 297, 310, 403, 424
AsuHPI GGTGA 3 cut(s) 154, 466, 475
AvaII GGWCC 2 cut(s) 297, 310
BanII GRGCYC 1 cut(s) 543
BauI CACGAG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 253, 275
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 264, 267
BlsI GCNGC 2 cut(s) 265, 268
Bme18I GGWCC 2 cut(s) 297, 310
BmgT120I GGNCC 4 cut(s) 297, 310, 403, 424
BmiI GGNNCC 1 cut(s) 299
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 307, 385, 386, 432
Bse3DI GCAATG 1 cut(s) 279
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 5 cut(s) 254, 307, 385, 386, 432
BseMI GCAATG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 410, 530
BseXI GCAGC 2 cut(s) 253, 275
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 405, 425
BsiHKAI GWGCWC 1 cut(s) 543
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 5 cut(s) 254, 307, 385, 386, 432
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 405, 425
Bsp1286I GDGCHC 1 cut(s) 543
BspACI CCGC 1 cut(s) 328
BspANI GGCC 2 cut(s) 405, 425
BspLI GGNNCC 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 279
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 334, 571
BstV1I GCAGC 2 cut(s) 253, 275
BsuRI GGCC 2 cut(s) 405, 425
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 541
BveI ACCTGC 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 297, 310, 403, 424
DdeI CTNAG 1 cut(s) 566
DraIII CACNNNGTG 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 297, 310
Eco53kI GAGCTC 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 543
FaiI YATR 1 cut(s) 261
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 264, 267
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 2 cut(s) 264, 267
GluI GCNGC 2 cut(s) 264, 267
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 2 cut(s) 405, 425
HphI GGTGA 3 cut(s) 154, 466, 475
Hpy166II GTNNAC 2 cut(s) 71, 313
Hpy188III TCNNGA 2 cut(s) 68, 88
Hpy8I GTNNAC 2 cut(s) 71, 313
HpyAV CCTTC 3 cut(s) 59, 394, 496
HpyCH4V TGCA 4 cut(s) 263, 291, 337, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 571
HpyF3I CTNAG 1 cut(s) 566
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 7 cut(s) 240, 261, 280, 341, 404, 440, 531
Lsp1109I GCAGC 2 cut(s) 253, 275
MboII GAAGA 1 cut(s) 478
MfeI CAATTG 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 3 cut(s) 338, 437, 457
MmeI TCCRAC 2 cut(s) 103, 492
MnlI CCTC 9 cut(s) 103, 126, 140, 183, 202, 388, 508, 519, 563
MroXI GAANNNNTTC 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 266
MunI CAATTG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 334, 571
NlaIV GGNNCC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 2 cut(s) 265, 268
PpuMI RGGWCCY 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 4 cut(s) 297, 310, 403, 424
PspPPI RGGWCCY 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 543
SatI GCNGC 2 cut(s) 264, 267
Sau96I GGNCC 4 cut(s) 297, 310, 403, 424
SduI GDGCHC 1 cut(s) 543
SinI GGWCC 2 cut(s) 297, 310
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 3 cut(s) 338, 437, 457
SsiI CCGC 1 cut(s) 328
SstI GAGCTC 1 cut(s) 543
TasI AATT 3 cut(s) 338, 437, 457
TscAI CASTG 1 cut(s) 541
TseI GCWGC 2 cut(s) 263, 266
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 297, 310
XapI RAATTY 2 cut(s) 437, 457
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.