RLG00000027797

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016618
Physical Location & Seq
Forward (+)
15344279 .. 15344845
567 bp
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UTR
Exon/CDS
Intron
RLM00000027797

Sequence Viewer

Length: 567 bp
ATGGAAACATTCTCAAGCTCTGTCTCAACTCTCAAAGTCCCAGGCACCCTTCTTTCAACTCCATCTCGTGAACTACTCCACCATTTCAAGACCTCTCACAACACCCACAAACTTCCTCCACAAACTCACCTCCACAAAACCACCTCTTTCACCCAAAAGCCTCTAACTTTATCCACACCCTCATTCTCAATCCCCACCAAAACCCGTTTCTCATCTCCAAATCTCCACAAAAACCCAGCTTCTGGTTATGCAGCTGCTCTCCTGGACATTGCTCAATGCAACAGGACACTTGAATTGGTCCACAAGGATGTGAAGAGGTTCTTGCAGTTGCTCCACAACAAGCAGGTTCAAGCGGTTTTGGAAAGCCTATTTGTGGGTTTGGAGGAGAAGGGCCAAGTGATGAAGCTGGTGGCCCAGAAAGGGAAATTCAACAAGCACTTGGTGAATTTGGTGAAGATGTTGGTTGAGAAAAGTAAAGTGGGGATTGTGAAGGAAATGTTGGAGGAGTTTGGGAGGATTTGCAGTGAGCTCTCTGGGGCTAATCAAGGATTGCTAAGAGGGCTGTGA

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

9.93

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 81 - 179 5.5e-15 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00895
fragaria_vesca FvH4_7g17180
malus_domestica MD01G1085700.v1.1
prunus_persica Prupe.2G193500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0360571
rosa_laevigata RLG00000027797
rosa_multiflora Rmu_sc0003481.1_g000003
rosa_roxburghii Rroxscaffold_4G00295990
rosa_rugosa Rorug01G0280000
rosa_samantha Rh1AG291900 Rh1BG256800 Rh1CG274700 Rh1DG286800
rosa_wichuraiana Rw1G025850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 425, 445
AdeI CACNNNGTG 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 242, 373, 420
AgsI TTSAA 5 cut(s) 57, 88, 293, 350, 430
AjnI CCWGG 2 cut(s) 40, 261
AjuI GAANNNNNNNTTGG 4 cut(s) 191, 223, 482, 514
AluBI AGCT 5 cut(s) 18, 239, 254, 406, 529
AluI AGCT 5 cut(s) 18, 239, 254, 406, 529
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 2 cut(s) 391, 411
ApeKI GCWGC 2 cut(s) 251, 254
ApoI RAATTY 2 cut(s) 425, 445
Asp700I GAANNNNTTC 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 298, 391, 412
AsuHPI GGTGA 4 cut(s) 119, 142, 454, 463
AvaII GGWCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 531
BauI CACGAG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 241, 263
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 42, 263
BcoDI GTCTC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 2 cut(s) 252, 255
BlsI GCNGC 2 cut(s) 253, 256
Bme1390I CCNGG 2 cut(s) 42, 263
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 3 cut(s) 298, 391, 412
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 42, 263
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 373, 420
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 42, 263
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 242, 373, 420
BseMI GCAATG 1 cut(s) 267
BseRI GAGGAG 2 cut(s) 398, 518
BseXI GCAGC 2 cut(s) 241, 263
BseYI CCCAGC 1 cut(s) 235
BshFI GGCC 2 cut(s) 393, 413
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 531
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 242, 373, 420
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 393, 413
Bsp1286I GDGCHC 1 cut(s) 531
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 393, 413
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 40
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 42, 263
Bst6I CTCTTC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 554
BstF5I GGATG 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNI CCWGG 2 cut(s) 42, 263
BstSCI CCNGG 2 cut(s) 40, 261
BstV1I GCAGC 2 cut(s) 241, 263
BsuRI GGCC 2 cut(s) 393, 413
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 242
Cfr13I GGNCC 3 cut(s) 298, 391, 412
DdeI CTNAG 1 cut(s) 554
DraIII CACNNNGTG 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 40, 261
EcoT38I GRGCYC 1 cut(s) 531
FaiI YATR 1 cut(s) 249
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 252, 255
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 252, 255
GluI GCNGC 2 cut(s) 252, 255
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 2 cut(s) 393, 413
HphI GGTGA 4 cut(s) 119, 142, 454, 463
Hpy166II GTNNAC 2 cut(s) 71, 301
Hpy188III TCNNGA 2 cut(s) 68, 88
Hpy8I GTNNAC 2 cut(s) 71, 301
HpyAV CCTTC 3 cut(s) 59, 382, 484
HpyCH4V TGCA 4 cut(s) 251, 279, 325, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 1 cut(s) 554
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 2 cut(s) 241, 263
MboII GAAGA 2 cut(s) 325, 466
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 3 cut(s) 293, 425, 445
MmeI TCCRAC 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 42, 263
MvaI CCWGG 2 cut(s) 42, 263
MwoI GCNNNNNNNGC 1 cut(s) 559
NlaIV GGNNCC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 2 cut(s) 253, 256
Psp124BI GAGCTC 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 40, 261
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 40, 261
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 3 cut(s) 298, 391, 412
PstNI CAGNNNCTG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 531
SatI GCNGC 2 cut(s) 252, 255
Sau96I GGNCC 3 cut(s) 298, 391, 412
ScrFI CCNGG 2 cut(s) 42, 263
SduI GDGCHC 1 cut(s) 531
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 3 cut(s) 293, 425, 445
SsiI CCGC 1 cut(s) 353
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 40, 261
TasI AATT 3 cut(s) 293, 425, 445
TscAI CASTG 1 cut(s) 529
TseI GCWGC 2 cut(s) 251, 254
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 2 cut(s) 425, 445
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.