FvH4_7g17430

Non-specific serine threonine protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
14814178 .. 14819704
5527 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17430.t4

Sequence Viewer

Length: 1284 bp
ATGAGTGCTCCCAAGTCGCCGAGGATGAGGACCCGGGTCGGCAAGTACGAGCTGGGTAAGACTCTCGGGGAGGGTACCTTTGCCAAGGTCAAGTTCGCCAAGAACACCGAAACAGGGCAGTGCGTGGCCATCAAAATCCTTGATCGTGAGCAAGTCCTCAAGCACAAGATGGTTGAGCATATAAAAAGAGAGATATCGACGATGAAGCTGATCAAACACCCGAATGTGACGCAAATGTTTGAGGTTATGGCAAGCAAAACTAAGATCTACATTGTTCTCGAGTTTGTTGATGGGGGTGAGCTCTTCGACGAAATAGCCAAAAATGGGAGACTGAAAGAGGACAATGCCAGGAGATACTTCCAGCAGCTCATTAATGCCGTGGATTACTGTCATAGTAGAGGCGTGTACCATAGGGATTTAAAGCCAGAGAATCTTCTCTTAGATTCATTCGGTGTCCTTAAAATTTCAGATTTTGGATTGAGTACATTTGAACAACAAGTGCGGGAAGATGGGCTGCTTCATACTGCCTGTGGGACTCCAAATTATGTTGCTCCTGAGGTTCTCAATAATAAAGGATACGAGGGTAAATCATCTGATGTTTGGTCTTGCGGGGTGATCCTTTTTGTACTTATGGCTGGTTACCTGCCTTTTGATGAACCAAATCTAATAGCTTTGTACCGAAAAATATGCAAAGCTGAATTTTCATGTCCAGCATGGTTCTCATCTGGTGCAAAGAAACTGATACACCGTATACTTGATCCAAACCCTGCTACAAGGATGACAATTCCTGAGATATTAGAAAATGATTGGTTTAAGAAAGATTACAAGCCAGCACAATTTAAAGAAGAAGATAACATAAATCTTGATGATGTGGATGCTGTTTTCAACAATTCGAAGGAAAATTTTGTAACAGAAAGGAGAGAAAAACCTACATCAATGAATGCTTTTGAGCTTATTTCTCGGTCACAGAGTTTCAATTTAGAAAATTTATTTGAGAAGCAGATGGGTCTTGTGAAACGAGAAACCCGTTTTACTTCTCAACGCCCTGCAAATGAAATCATGAGTAAGATTGAGGAAACTGCAAAGCCTTTGGGCTTTAATATTCGCAAGAAAGACTACAAGATGAAGTTGCAAGGTGATAAGCATGGAAGGAAGGGTCACCTGTCTGTAGCCACTGAGGTGTTCGAGGTGGCTCCCTCCGTGCACATGGTAGAACTCAGGAAAACTGGCGGTGACACACTAGAGTTTCACAAGTTCTATAACTTTGTAATCTCAGTTCTATAA

Protein Analysis

428

Amino Acids

48.99

Weight (kDa)

8.93

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 204 6.4e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 200 1.2e-28 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 45 - 153 7.1e-06 Kinase-like
NAF PF03822 243 - 303 9.6e-24 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 651
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 751
AciI CCGC 3 cut(s) 502, 609, 1230
AclWI GGATC 2 cut(s) 610, 752
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 4 cut(s) 462, 698, 901, 985
AfaI GTAC 6 cut(s) 47, 76, 407, 484, 627, 677
AfiI CCNNNNNNNGG 2 cut(s) 114, 324
AgsI TTSAA 3 cut(s) 491, 886, 976
AjnI CCWGG 1 cut(s) 347
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AleI CACNNNNGTG 1 cut(s) 1178
AluBI AGCT 7 cut(s) 52, 208, 301, 367, 671, 695, 952
AluI AGCT 7 cut(s) 52, 208, 301, 367, 671, 695, 952
Alw21I GWGCWC 3 cut(s) 10, 303, 1206
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 1202
AlwI GGATC 2 cut(s) 610, 752
Ama87I CYCGRG 3 cut(s) 33, 65, 278
AoxI GGCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 1202
ApeKI GCWGC 2 cut(s) 364, 514
ApoI RAATTY 4 cut(s) 462, 698, 901, 985
AseI ATTAAT 1 cut(s) 372
Asp718I GGTACC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 2 cut(s) 34, 35
AsuHPI GGTGA 5 cut(s) 308, 625, 1148, 1151, 1244
AsuII TTCGAA 1 cut(s) 893
AvaI CYCGRG 3 cut(s) 33, 65, 278
AvaII GGWCC 1 cut(s) 30
AxyI CCTNAGG 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 1206
BaeI ACNNNNGTAYC 2 cut(s) 568, 601
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 303
Bbv12I GWGCWC 3 cut(s) 10, 303, 1206
BbvI GCAGC 2 cut(s) 376, 501
BccI CCATC 5 cut(s) 137, 163, 284, 503, 997
BceAI ACGGC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 1 cut(s) 349
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 2 cut(s) 34, 35
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 1241
BfmI CTRYAG 1 cut(s) 1167
BfuAI ACCTGC 1 cut(s) 651
BfuI GTATCC 1 cut(s) 569
BglII AGATCT 1 cut(s) 264
BisI GCNGC 2 cut(s) 365, 515
BlsI GCNGC 2 cut(s) 366, 516
Bme1390I CCNGG 3 cut(s) 34, 35, 349
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 3 cut(s) 33, 65, 278
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 32, 76, 1194
BmrFI CCNGG 3 cut(s) 34, 35, 349
BmsI GCATC 1 cut(s) 865
BoxI GACNNNNGTC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 34, 35
BsaJI CCNNGG 4 cut(s) 20, 33, 84, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 324
Bse1I ACTGG 1 cut(s) 1231
Bse21I CCTNAGG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 20, 33, 84, 378
BseGI GGATG 3 cut(s) 30, 783, 880
BseLI CCNNNNNNNGG 2 cut(s) 114, 324
BseMII CTCAG 4 cut(s) 546, 780, 1167, 1231
BseNI ACTGG 1 cut(s) 1231
BseSI GKGCMC 1 cut(s) 1206
BseXI GCAGC 2 cut(s) 376, 501
BseYI CCCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 3 cut(s) 10, 303, 1206
BsiHKCI CYCGRG 3 cut(s) 33, 65, 278
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 2 cut(s) 114, 324
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 3 cut(s) 33, 65, 278
Bsp119I TTCGAA 1 cut(s) 893
Bsp1286I GDGCHC 3 cut(s) 10, 303, 1206
Bsp143I GATC 5 cut(s) 142, 210, 264, 615, 757
BspACI CCGC 3 cut(s) 502, 609, 1230
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 4 cut(s) 547, 781, 1168, 1230
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 3 cut(s) 32, 76, 1194
BspMI ACCTGC 1 cut(s) 651
BspPI GGATC 2 cut(s) 610, 752
BspQI GCTCTTC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 893
BspT107I GGYRCC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 1231
BssECI CCNNGG 4 cut(s) 20, 33, 84, 378
BssMI GATC 5 cut(s) 142, 210, 264, 615, 757
BssNAI GTATAC 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 389, 749
Bst6I CTCTTC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 893
BstC8I GCNNGC 2 cut(s) 253, 831
BstDEI CTNAG 7 cut(s) 261, 439, 555, 789, 1176, 1217, 1273
BstDSI CCRYGG 1 cut(s) 378
BstEII GGTNACC 2 cut(s) 638, 1157
BstF5I GGATG 3 cut(s) 30, 783, 880
BstKTI GATC 5 cut(s) 145, 213, 267, 618, 760
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 5 cut(s) 142, 210, 264, 615, 757
BstNI CCWGG 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 35
BstPI GGTNACC 2 cut(s) 638, 1157
BstSCI CCNGG 3 cut(s) 32, 33, 347
BstSFI CTRYAG 1 cut(s) 1167
BstSLI GKGCMC 1 cut(s) 1206
BstV1I GCAGC 2 cut(s) 376, 501
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BstZ17I GTATAC 1 cut(s) 752
Bsu36I CCTNAGG 1 cut(s) 555
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 30, 783, 880
BtsI GCAGTG 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 125, 1173
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 2 cut(s) 253, 831
CciI TCATGA 1 cut(s) 1059
Cfr13I GGNCC 1 cut(s) 30
Cfr9I CCCGGG 1 cut(s) 33
CseI GACGC 1 cut(s) 238
Csp6I GTAC 6 cut(s) 46, 75, 406, 483, 626, 676
CviAII CATG 5 cut(s) 705, 714, 1060, 1145, 1207
CviQI GTAC 6 cut(s) 46, 75, 406, 483, 626, 676
DdeI CTNAG 7 cut(s) 261, 439, 555, 789, 1176, 1217, 1273
DpnI GATC 5 cut(s) 144, 212, 266, 617, 759
DpnII GATC 5 cut(s) 142, 210, 264, 615, 757
DraI TTTAAA 2 cut(s) 420, 841
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 303
Eco32I GATATC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 301
Eco81I CCTNAGG 1 cut(s) 555
Eco88I CYCGRG 3 cut(s) 33, 65, 278
Eco91I GGTNACC 2 cut(s) 638, 1157
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 30
EcoO65I GGTNACC 2 cut(s) 638, 1157
EcoRII CCWGG 1 cut(s) 347
EcoRV GATATC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 5 cut(s) 708, 717, 1063, 1148, 1210
FaqI GGGAC 1 cut(s) 547
FatI CATG 5 cut(s) 704, 713, 1059, 1144, 1206
FauI CCCGC 2 cut(s) 495, 602
FbaI TGATCA 1 cut(s) 210
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 2 cut(s) 365, 515
FokI GGATG 3 cut(s) 37, 790, 887
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 365, 515
FspBI CTAG 1 cut(s) 1241
GluI GCNGC 2 cut(s) 365, 515
GsaI CCCAGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 238
Hin1II CATG 5 cut(s) 708, 717, 1063, 1148, 1210
HinfI GANTC 4 cut(s) 61, 430, 443, 535
HpaII CCGG 1 cut(s) 34
HphI GGTGA 5 cut(s) 308, 625, 1148, 1151, 1244
Hpy166II GTNNAC 3 cut(s) 406, 752, 1204
Hpy188I TCNGA 2 cut(s) 469, 595
Hpy188III TCNNGA 7 cut(s) 146, 278, 554, 788, 863, 1060, 1219
Hpy8I GTNNAC 3 cut(s) 406, 752, 1204
Hpy99I CGWCG 2 cut(s) 202, 311
HpyAV CCTTC 3 cut(s) 889, 1143, 1147
HpyCH4III ACNGT 2 cut(s) 389, 749
HpyCH4V TGCA 6 cut(s) 690, 731, 1049, 1082, 1132, 1204
HpyF3I CTNAG 7 cut(s) 261, 439, 555, 789, 1176, 1217, 1273
Hsp92II CATG 5 cut(s) 708, 717, 1063, 1148, 1210
KpnI GGTACC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 5 cut(s) 142, 210, 264, 615, 757
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 3 cut(s) 13, 556, 1198
Lsp1109I GCAGC 2 cut(s) 376, 501
LweI GCATC 1 cut(s) 865
MaeI CTAG 1 cut(s) 1241
MaeIII GTNAC 6 cut(s) 226, 638, 907, 963, 1157, 1232
MalI GATC 5 cut(s) 144, 212, 266, 617, 759
MboI GATC 5 cut(s) 142, 210, 264, 615, 757
MboII GAAGA 5 cut(s) 295, 425, 518, 857, 860
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 3 cut(s) 10, 303, 1206
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 9 cut(s) 462, 541, 698, 783, 836, 889, 901, 976, 985
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 55, 529
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 6 cut(s) 372, 419, 459, 813, 840, 1098
MslI CAYNNNNRTG 2 cut(s) 222, 1178
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 3 cut(s) 34, 35, 349
Mva1269I GAATGC 1 cut(s) 946
MvaI CCWGG 1 cut(s) 349
NciI CCSGG 2 cut(s) 34, 35
NdeII GATC 5 cut(s) 142, 210, 264, 615, 757
NlaIII CATG 5 cut(s) 708, 717, 1063, 1148, 1210
NlaIV GGNNCC 3 cut(s) 32, 76, 1194
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 4 cut(s) 226, 963, 1157, 1232
NspV TTCGAA 1 cut(s) 893
OliI CACNNNNGTG 1 cut(s) 1178
PaeR7I CTCGAG 1 cut(s) 278
PagI TCATGA 1 cut(s) 1059
PciSI GCTCTTC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 1024
PctI GAATGC 1 cut(s) 946
PfeI GAWTC 2 cut(s) 430, 443
PkrI GCNGC 2 cut(s) 366, 516
PleI GAGTC 2 cut(s) 55, 529
PpsI GAGTC 2 cut(s) 55, 529
PpuMI RGGWCCY 1 cut(s) 30
PshAI GACNNNNGTC 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 347
PspEI GGTNACC 2 cut(s) 638, 1157
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 3 cut(s) 32, 76, 1194
PspPI GGNCC 1 cut(s) 30
PspPPI RGGWCCY 1 cut(s) 30
PsrI GAACNNNNNNTAC 1 cut(s) 1260
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 6 cut(s) 47, 76, 407, 484, 627, 677
RsaNI GTAC 6 cut(s) 46, 75, 406, 483, 626, 676
RseI CAYNNNNRTG 2 cut(s) 222, 1178
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 6 cut(s) 372, 419, 459, 813, 840, 1098
SatI GCNGC 2 cut(s) 365, 515
Sau3AI GATC 5 cut(s) 142, 210, 264, 615, 757
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 2 cut(s) 55, 529
ScrFI CCNGG 3 cut(s) 34, 35, 349
SduI GDGCHC 3 cut(s) 10, 303, 1206
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 1 cut(s) 1167
Sfr274I CTCGAG 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 893
SinI GGWCC 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 278
SmaI CCCGGG 1 cut(s) 35
SmiMI CAYNNNNRTG 2 cut(s) 222, 1178
SmlI CTYRAG 2 cut(s) 158, 278
SmoI CTYRAG 2 cut(s) 158, 278
Sse9I AATT 9 cut(s) 462, 541, 698, 783, 836, 889, 901, 976, 985
SsiI CCGC 3 cut(s) 502, 609, 1230
SspI AATATT 1 cut(s) 1102
SspMI CTAG 1 cut(s) 1241
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 32, 33, 347
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 389, 749
TaqI TCGA 5 cut(s) 197, 279, 306, 893, 1185
TaqII GACCGA 1 cut(s) 951
TasI AATT 9 cut(s) 462, 541, 698, 783, 836, 889, 901, 976, 985
TatI WGTACW 2 cut(s) 482, 625
TfiI GAWTC 2 cut(s) 430, 443
Tru1I TTAA 6 cut(s) 372, 419, 459, 813, 840, 1098
Tru9I TTAA 6 cut(s) 372, 419, 459, 813, 840, 1098
TscAI CASTG 2 cut(s) 125, 1180
TseFI GTSAC 4 cut(s) 226, 963, 1157, 1232
TseI GCWGC 2 cut(s) 364, 514
Tsp45I GTSAC 4 cut(s) 226, 963, 1157, 1232
TspDTI ATGAA 8 cut(s) 218, 435, 509, 669, 693, 953, 1068, 1139
TspGWI ACGGA 1 cut(s) 1189
TspMI CCCGGG 1 cut(s) 33
TspRI CASTG 2 cut(s) 125, 1180
VneI GTGCAC 1 cut(s) 1202
VpaK11BI GGWCC 1 cut(s) 30
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 4 cut(s) 462, 698, 901, 985
XhoI CTCGAG 1 cut(s) 278
XmaI CCCGGG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 751
XspI CTAG 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.