Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007667

Physical Location & Seq

Genomic Coordinates Reverse (-)

39551486 .. 39551980

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGATCGCAAATTCAAAGGCCCCCGGGGAGTCGTTGAAGTGGGATGACCTTCAGAAGATGAAGTACTCATGGAATGTAGCACAAGAAGTGCTGAGATTGGCACCGCCTGTTCAAGGAGCCTTCAGGGAGGCATTGGCCGATTTTGCCATCAATGGTTTTAAAATTCCAAAAGGGTGGAAGTTGTACTGGAGCCCACTTTCGACACACAAGAATGCCGATGTCTTCCCGGAACCGGAGAAATTTGACCCGTCAAGATTTGAAGGAAAGGGACCTGCACCTTACATGTATGTTCCGTTCGGCGGAGGCCCGAGAATGTGTCCAGGAAATGAGTACTCCCGAGTGGTAATACTGGTGTTCATGCATAATTTGGTGAAGAGGTTCAAGTGGGAAAAGGTTTTTCCTAATGAGAAGACAACCATTGCTCCTTTCCCCATCCCCACCAAAGGGCTTCCCGTCCGCCTTTTTCATCACCACAGATCAGCTCAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009651 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010555 GO:0010959 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032879 GO:0033554 GO:0035556 GO:0036211 GO:0042221 GO:0042592 GO:0042594 GO:0043170 GO:0043266 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051365 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

164

Amino Acids

18.77

Weight (kDa)

9.65

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	11 - 133	2.8e-35	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01140 AT1G01140 AT1G01140
fragaria_vesca	FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430
malus_domestica	MD01G1087300.v1.1 MD07G1157500.v1.1
prunus_persica	Prupe.2G195900_v2.0.a1 Prupe.2G195900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360871
rosa_laevigata	RLG00000027776
rosa_multiflora	Rmu_co8111366.1_g000001 Rmu_sc0000677.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295740
rosa_rugosa	Rorug01G0282600 Rorug01G0282700 Rorug01G0282800
rosa_samantha	Rh1BG259300 Rh1DG289300 Rh5DG353600
rosa_wichuraiana	Rw1G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	3 cut(s)	107, 303, 460
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	13, 165, 242
AcuI	CTGAAG	2 cut(s)	38, 109
AfaI	GTAC	3 cut(s)	68, 188, 335
AfiI	CCNNNNNNNGG	5 cut(s)	116, 235, 302, 446, 447
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	5 cut(s)	18, 40, 116, 263, 385
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	1 cut(s)	485
AluI	AGCT	1 cut(s)	485
Ama87I	CYCGRG	3 cut(s)	26, 310, 339
AoxI	GGCC	3 cut(s)	21, 138, 307
ApoI	RAATTY	3 cut(s)	13, 165, 242
Asp700I	GAANNNNTTC	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	22, 272, 308
AsuC2I	CCSGG	3 cut(s)	27, 28, 230
AsuHPI	GGTGA	2 cut(s)	385, 464
AvaI	CYCGRG	3 cut(s)	26, 310, 339
AvaII	GGWCC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BbsI	GAAGAC	2 cut(s)	217, 419
BccI	CCATC	2 cut(s)	158, 443
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	3 cut(s)	27, 28, 230
BfuAI	ACCTGC	1 cut(s)	283
BlpI	GCTNAGC	1 cut(s)	486
BmcAI	AGTACT	2 cut(s)	68, 335
Bme1390I	CCNGG	4 cut(s)	27, 28, 230, 324
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	3 cut(s)	26, 310, 339
BmgT120I	GGNCC	3 cut(s)	22, 272, 308
BmiI	GGNNCC	6 cut(s)	24, 105, 121, 194, 234, 273
BmrFI	CCNGG	4 cut(s)	27, 28, 230, 324
BpiI	GAAGAC	2 cut(s)	217, 419
BpmI	CTGGAG	1 cut(s)	211
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuMI	CCSGG	3 cut(s)	27, 28, 230
BsaJI	CCNNGG	3 cut(s)	25, 26, 27
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 235, 302, 446, 447
Bse1I	ACTGG	2 cut(s)	194, 357
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	25, 26, 27
BseGI	GGATG	2 cut(s)	52, 435
BseLI	CCNNNNNNNGG	5 cut(s)	116, 235, 302, 446, 447
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	194, 357
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	23, 140, 309
BshNI	GGYRCC	1 cut(s)	103
BsiHKCI	CYCGRG	3 cut(s)	26, 310, 339
BsiSI	CCGG	3 cut(s)	27, 230, 236
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	5 cut(s)	116, 235, 302, 446, 447
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	23, 140, 309
BsoBI	CYCGRG	3 cut(s)	26, 310, 339
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	6, 479
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	3 cut(s)	107, 303, 460
BspANI	GGCC	3 cut(s)	23, 140, 309
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	6 cut(s)	24, 105, 121, 194, 234, 273
BspMI	ACCTGC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	194, 357
BssECI	CCNNGG	3 cut(s)	25, 26, 27
BssMI	GATC	2 cut(s)	6, 479
Bst2UI	CCWGG	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	95, 486
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	52, 435
BstKTI	GATC	2 cut(s)	9, 482
BstMBI	GATC	2 cut(s)	6, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	4 cut(s)	25, 26, 228, 322
BstV2I	GAAGAC	2 cut(s)	217, 419
BstXI	CCANNNNNNTGG	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	23, 140, 309
BtsCI	GGATG	2 cut(s)	52, 435
BveI	ACCTGC	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	22, 272, 308
Cfr9I	CCCGGG	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	67, 187, 334
CviAII	CATG	3 cut(s)	72, 286, 361
CviJI	RGCY	8 cut(s)	23, 122, 140, 195, 309, 451, 485, 490
CviKI_1	RGCY	8 cut(s)	23, 122, 140, 195, 309, 451, 485, 490
CviQI	GTAC	3 cut(s)	67, 187, 334
DdeI	CTNAG	2 cut(s)	95, 486
DpnI	GATC	2 cut(s)	8, 481
DpnII	GATC	2 cut(s)	6, 479
DraI	TTTAAA	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	2 cut(s)	318, 449
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	38, 109
Eco88I	CYCGRG	3 cut(s)	26, 310, 339
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	2 cut(s)	22, 272
EcoRII	CCWGG	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	3 cut(s)	75, 289, 364
FaiI	YATR	6 cut(s)	73, 287, 291, 362, 366, 493
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	71, 285, 360
FokI	GGATG	2 cut(s)	59, 422
FriOI	GRGCYC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	23, 140, 309
HapII	CCGG	3 cut(s)	27, 230, 236
Hin1II	CATG	3 cut(s)	75, 289, 364
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	3 cut(s)	27, 230, 236
HphI	GGTGA	2 cut(s)	385, 464
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	255, 339
HpyAV	CCTTC	3 cut(s)	62, 133, 257
HpyCH4V	TGCA	2 cut(s)	278, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	95, 486
Hsp92II	CATG	3 cut(s)	75, 289, 364
Kzo9I	GATC	2 cut(s)	6, 479
LmnI	GCTCC	3 cut(s)	119, 192, 430
MalI	GATC	2 cut(s)	8, 481
MboI	GATC	2 cut(s)	6, 479
MboII	GAAGA	4 cut(s)	70, 217, 388, 424
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	4 cut(s)	13, 165, 242, 367
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	124, 299, 372
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	3 cut(s)	27, 230, 236
MspR9I	CCNGG	4 cut(s)	27, 28, 230, 324
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	3 cut(s)	27, 28, 230
NdeII	GATC	2 cut(s)	6, 479
NlaIII	CATG	3 cut(s)	75, 289, 364
NlaIV	GGNNCC	6 cut(s)	24, 105, 121, 194, 234, 273
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	380
PfoI	TCCNGGA	2 cut(s)	228, 322
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	272
PscI	ACATGT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	6 cut(s)	24, 105, 121, 194, 234, 273
PspPI	GGNCC	3 cut(s)	22, 272, 308
PspPPI	RGGWCCY	1 cut(s)	272
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
RsaI	GTAC	3 cut(s)	68, 188, 335
RsaNI	GTAC	3 cut(s)	67, 187, 334
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	6, 479
Sau96I	GGNCC	3 cut(s)	22, 272, 308
ScaI	AGTACT	2 cut(s)	68, 335
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	4 cut(s)	27, 28, 230, 324
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	54, 277, 283, 383, 399, 487
SinI	GGWCC	1 cut(s)	272
SmaI	CCCGGG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	13, 165, 242, 367
SsiI	CCGC	3 cut(s)	107, 303, 460
StyD4I	CCNGG	4 cut(s)	25, 26, 228, 322
TaqI	TCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	13, 165, 242, 367
TatI	WGTACW	3 cut(s)	66, 186, 333
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	3 cut(s)	77, 349, 458
TspGWI	ACGGA	1 cut(s)	285
TspMI	CCCGGG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	3 cut(s)	13, 165, 242
XceI	RCATGY	1 cut(s)	289
XmaI	CCCGGG	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	380
ZrmI	AGTACT	2 cut(s)	68, 335
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.