Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007667

Physical Location & Seq

Genomic Coordinates Forward (+)

49064807 .. 49065112

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG353600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGTCAACCCAAAATCAAGCGTAGAGTGGGTAAATATGAGGTGGGAAGGACAATTGGTGAGGGAACGTTTGCAAAAGTGAAGTTTGCTAGAAATTCTGAGACTGGGGAACCTGTGGCTCTTAAGATTCTTGACAAAGAGAAGGTTCTCAAACACAAGATGGCTGAACAGGTATATATGTATTTGTTCTTGGTTGCAATTCACACACACATAGACAAACACTCACACAAACTCTCTCTCTCTCCTGTGGATTTTTTTTTTTATCATTGGGATGATAAAAACAATACATTACTATGTCAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

101

Amino Acids

11.84

Weight (kDa)

9.49

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 57	1.2e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01140 AT1G01140 AT1G01140
fragaria_vesca	FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430
malus_domestica	MD01G1087300.v1.1 MD07G1157500.v1.1
prunus_persica	Prupe.2G195900_v2.0.a1 Prupe.2G195900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360871
rosa_laevigata	RLG00000027776
rosa_multiflora	Rmu_co8111366.1_g000001 Rmu_sc0000677.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295740
rosa_rugosa	Rorug01G0282600 Rorug01G0282700 Rorug01G0282800
rosa_samantha	Rh1BG259300 Rh1DG289300 Rh5DG353600
rosa_wichuraiana	Rw1G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	71
BccI	CCATC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	109
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	277
CviJI	RGCY	2 cut(s)	119, 164
CviKI_1	RGCY	2 cut(s)	119, 164
DdeI	CTNAG	1 cut(s)	99
FaiI	YATR	6 cut(s)	39, 175, 177, 179, 212, 295
FokI	GGATG	1 cut(s)	284
FspBI	CTAG	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	4, 127
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	42, 136
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	74, 197
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	68
LpnPI	CCDG	4 cut(s)	90, 126, 155, 258
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	68
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	3 cut(s)	54, 94, 198
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	34, 55
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	270, 292
MspCI	CTTAAG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	54
NlaIV	GGNNCC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	270, 292
SaqAI	TTAA	1 cut(s)	123
SchI	GAGTC	1 cut(s)	13
SetI	ASST	5 cut(s)	45, 71, 115, 147, 174
SgeI	CNNG	9 cut(s)	31, 102, 117, 125, 143, 169, 182, 202, 257
SmiMI	CAYNNNNRTG	2 cut(s)	270, 292
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	54, 94, 198
SspMI	CTAG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	71
TasI	AATT	3 cut(s)	54, 94, 198
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.